Wall clock time and date at job start Mon Mar 30 2020 03:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52997 * 109.47281 * 2 1 4 4 C 1.53000 * 109.47447 * 120.00306 * 2 1 3 5 5 C 1.52992 * 109.47514 * 174.99958 * 4 2 1 6 6 C 1.53005 * 109.47292 * 179.97438 * 5 4 2 7 7 H 1.09002 * 110.33140 * 54.29792 * 6 5 4 8 8 C 1.54481 * 110.46871 * 176.61332 * 6 5 4 9 9 C 1.54506 * 104.06328 * 142.85832 * 8 6 5 10 10 C 1.54477 * 104.06393 * 359.97438 * 9 8 6 11 11 H 1.08998 * 110.37477 * 94.85232 * 10 9 8 12 12 C 1.50704 * 110.37285 * 217.19194 * 10 9 8 13 13 H 1.08000 * 119.99550 * 356.83023 * 12 10 9 14 14 C 1.37870 * 120.00026 * 176.83589 * 12 10 9 15 15 N 1.31513 * 120.00068 * 180.02562 * 14 12 10 16 16 Si 1.86800 * 120.00046 * 359.97438 * 14 12 10 17 17 H 1.48501 * 109.46953 * 90.00455 * 16 14 12 18 18 H 1.48506 * 109.47508 * 209.99933 * 16 14 12 19 19 H 1.48501 * 109.47305 * 330.00331 * 16 14 12 20 20 O 1.44423 * 104.80156 * 336.01945 * 10 9 8 21 21 H 1.08996 * 109.47197 * 299.99967 * 1 2 3 22 22 H 1.08998 * 109.47205 * 59.99955 * 1 2 3 23 23 H 1.09002 * 109.47455 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.47204 * 240.00155 * 2 1 3 25 25 H 1.08998 * 109.47493 * 59.99941 * 3 2 1 26 26 H 1.09007 * 109.47421 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47525 * 300.00055 * 3 2 1 28 28 H 1.09005 * 109.47139 * 54.99698 * 4 2 1 29 29 H 1.09004 * 109.46920 * 295.00045 * 4 2 1 30 30 H 1.09005 * 109.47600 * 59.99983 * 5 4 2 31 31 H 1.09004 * 109.47547 * 299.99691 * 5 4 2 32 32 H 1.08996 * 110.51209 * 261.50459 * 8 6 5 33 33 H 1.09006 * 110.50965 * 24.21172 * 8 6 5 34 34 H 1.09006 * 110.50783 * 241.35215 * 9 8 6 35 35 H 1.08992 * 110.51043 * 118.64729 * 9 8 6 36 36 H 0.97004 * 120.00243 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5647 -0.8311 1.1879 6 6 4.0748 -1.5519 2.4374 7 1 3.5727 -2.5125 2.5521 8 6 5.6048 -1.7507 2.3597 9 6 6.0846 -1.5449 3.8139 10 6 4.7878 -1.2454 4.5981 11 1 4.3946 -2.1588 5.0442 12 6 5.0454 -0.2094 5.6619 13 1 6.0450 0.1695 5.8157 14 6 4.0052 0.2544 6.4387 15 7 4.2299 1.1589 7.3667 16 14 2.2762 -0.4007 6.1722 17 1 2.0599 -1.5913 7.0329 18 1 1.2885 0.6508 6.5247 19 1 2.1056 -0.7823 4.7473 20 8 3.8686 -0.7326 3.6092 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.6766 1.9563 0.8899 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6053 -1.7199 1.2951 29 1 1.7516 -0.1584 2.1369 30 1 3.9995 0.1675 1.1420 31 1 3.8532 -1.3941 0.3002 32 1 5.8421 -2.7582 2.0182 33 1 6.0535 -1.0074 1.7006 34 1 6.7705 -0.6998 3.8737 35 1 6.5591 -2.4506 4.1912 36 1 3.4979 1.4855 7.9130 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394123587.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:23 Heat of formation + Delta-G solvation = -76.897593 kcal Electronic energy + Delta-G solvation = -14771.598903 eV Core-core repulsion = 12447.658697 eV Total energy + Delta-G solvation = -2323.940207 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.59180 -36.47675 -32.73484 -31.43644 -30.94360 -27.94157 -27.05484 -24.81009 -22.33238 -20.49785 -19.96265 -19.52082 -16.95342 -15.74484 -15.07372 -14.63566 -14.47310 -13.93753 -13.60738 -13.01954 -12.81853 -12.56945 -12.43978 -12.09962 -11.78449 -11.41631 -11.18296 -11.01634 -10.93643 -10.75773 -10.43506 -10.24607 -9.99777 -9.88288 -9.76026 -9.55866 -9.31410 -8.52113 -8.28919 -6.06772 -4.14549 3.41113 3.47469 3.72489 4.57157 4.85765 4.88950 5.04395 5.08943 5.40619 5.45705 5.51571 5.65468 5.69907 5.71449 5.84162 5.85760 5.91101 5.95612 6.04377 6.15500 6.24943 6.28492 6.32919 6.39291 6.48483 6.56324 6.59353 6.69869 6.78953 6.81888 7.20171 7.65785 8.23120 8.48757 8.94226 9.57428 11.03916 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.026704 B = 0.010303 C = 0.008349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.276384 B = 2717.116708 C = 3352.735719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.149 4.149 4 C -0.114 4.114 5 C -0.109 4.109 6 C 0.063 3.937 7 H 0.048 0.952 8 C -0.149 4.149 9 C -0.136 4.136 10 C 0.168 3.832 11 H 0.022 0.978 12 C -0.519 4.519 13 H 0.078 0.922 14 C 0.082 3.918 15 N -0.895 5.895 16 Si 0.868 3.132 17 H -0.286 1.286 18 H -0.292 1.292 19 H -0.221 1.221 20 O -0.365 6.365 21 H 0.055 0.945 22 H 0.049 0.951 23 H 0.051 0.949 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.047 0.953 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.137 -4.564 -14.178 15.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.206 4.206 4 C -0.151 4.151 5 C -0.146 4.146 6 C 0.004 3.996 7 H 0.066 0.934 8 C -0.187 4.187 9 C -0.174 4.174 10 C 0.112 3.888 11 H 0.040 0.960 12 C -0.555 4.555 13 H 0.096 0.904 14 C -0.122 4.122 15 N -0.532 5.532 16 Si 0.694 3.306 17 H -0.213 1.213 18 H -0.219 1.219 19 H -0.144 1.144 20 O -0.285 6.285 21 H 0.074 0.926 22 H 0.068 0.932 23 H 0.070 0.930 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.358 -4.275 -14.026 15.297 hybrid contribution -0.692 -0.411 0.057 0.807 sum -5.050 -4.686 -13.969 15.576 Atomic orbital electron populations 1.21840 0.95737 1.01363 1.01474 1.21128 0.95302 0.96580 0.98490 1.21886 1.01454 0.95922 1.01321 1.21622 0.95527 1.00111 0.97873 1.21650 0.95723 1.01228 0.96044 1.22818 0.93772 0.94217 0.88754 0.93378 1.22953 0.96826 1.00541 0.98392 1.22845 1.00159 1.00864 0.93512 1.20929 0.84839 0.95194 0.87809 0.96044 1.20973 0.96778 1.24159 1.13634 0.90419 1.25046 0.99615 0.93812 0.93690 1.69927 1.32848 1.29231 1.21208 0.87031 0.83637 0.78364 0.81537 1.21275 1.21869 1.14388 1.89535 1.61626 1.55752 1.21603 0.92636 0.93154 0.92995 0.91789 0.92481 0.92283 0.93415 0.92656 0.90910 0.91073 0.92093 0.92315 0.91723 0.91246 0.92549 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.19 37.15 0.34 -1.33 16 2 C -0.10 -1.21 2.92 -90.63 -0.26 -1.47 16 3 C -0.15 -1.87 8.95 37.16 0.33 -1.54 16 4 C -0.11 -1.72 4.61 -26.74 -0.12 -1.85 16 5 C -0.11 -1.70 4.61 -26.73 -0.12 -1.83 16 6 C 0.06 1.17 3.26 -25.95 -0.08 1.09 16 7 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 8 C -0.15 -2.57 6.63 -25.16 -0.17 -2.74 16 9 C -0.14 -2.78 6.62 -25.17 -0.17 -2.95 16 10 C 0.17 4.14 2.52 -27.11 -0.07 4.07 16 11 H 0.02 0.54 7.65 -51.93 -0.40 0.14 16 12 C -0.52 -15.12 9.36 -34.44 -0.32 -15.44 16 13 H 0.08 2.41 7.84 -52.49 -0.41 2.00 16 14 C 0.08 2.46 5.47 -17.82 -0.10 2.36 16 15 N -0.89 -28.02 13.96 55.43 0.77 -27.24 16 16 Si 0.87 22.35 27.08 -169.99 -4.60 17.75 16 17 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 18 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 19 H -0.22 -5.51 5.37 56.52 0.30 -5.20 16 20 O -0.36 -8.71 7.76 -35.23 -0.27 -8.98 16 21 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.76 6.56 -51.92 -0.34 0.41 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.07 1.31 7.95 -51.93 -0.41 0.89 16 30 H 0.07 1.17 6.56 -51.93 -0.34 0.83 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 1.05 7.88 -51.93 -0.41 0.64 16 34 H 0.07 1.47 7.72 -51.93 -0.40 1.07 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 LS Contribution 282.55 15.07 4.26 4.26 Total: -1.00 -30.96 282.55 -7.18 -38.14 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -6.60 Total: -2.30 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: -0.74 Total: -21.62 kcal Atomic # 7 Polarization: -28.02 SS G_CDS: 0.77 Total: -27.24 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -0.27 Total: -8.98 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.60 Total: 17.75 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.96 -7.18 -38.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394123587.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.753 kcal (2) G-P(sol) polarization free energy of solvation -30.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds