Wall clock time and date at job start Mon Mar 30 2020 03:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 C 1.52994 * 109.47404 * 294.99916 * 4 2 1 6 6 C 1.52997 * 109.47404 * 180.02562 * 5 4 2 7 7 H 1.09004 * 110.27713 * 55.64018 * 6 5 4 8 8 C 1.54948 * 110.31123 * 177.83851 * 6 5 4 9 9 C 1.55311 * 100.94351 * 155.36242 * 8 6 5 10 10 C 1.54379 * 102.24925 * 325.86234 * 9 8 6 11 11 H 1.09004 * 109.83329 * 261.84252 * 10 9 8 12 12 C 1.50701 * 109.90461 * 140.91537 * 10 9 8 13 13 H 1.07995 * 119.99899 * 0.36777 * 12 10 9 14 14 C 1.37879 * 120.00119 * 180.36687 * 12 10 9 15 15 N 1.31517 * 120.00191 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 120.00083 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47045 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47092 * 119.99960 * 16 14 12 19 19 H 1.48497 * 109.47073 * 239.99964 * 16 14 12 20 20 O 1.43242 * 107.59241 * 21.35824 * 10 9 8 21 21 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 22 22 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 24 24 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 25 25 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 26 26 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 27 27 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 28 28 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 29 29 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 30 30 H 1.09000 * 109.47476 * 300.00087 * 5 4 2 31 31 H 1.09008 * 109.46970 * 60.00049 * 5 4 2 32 32 H 1.09010 * 111.12273 * 273.27394 * 8 6 5 33 33 H 1.08997 * 111.12765 * 37.43620 * 8 6 5 34 34 H 1.08995 * 110.84240 * 207.67498 * 9 8 6 35 35 H 1.08990 * 111.02321 * 84.13077 * 9 8 6 36 36 H 0.96991 * 119.99866 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6352 -2.1954 -1.1881 6 6 2.1457 -2.9167 -2.4370 7 1 3.2228 -2.7826 -2.5370 8 6 1.7932 -4.4240 -2.3694 9 6 1.7837 -4.7926 -3.8781 10 6 1.2457 -3.4996 -4.5278 11 1 0.1782 -3.6006 -4.7235 12 6 1.9784 -3.2299 -5.8168 13 1 2.7480 -3.9089 -6.1527 14 6 1.6660 -2.1162 -6.5673 15 7 0.7291 -1.2890 -6.1580 16 14 2.5736 -1.7823 -8.1654 17 1 3.5736 -2.8548 -8.4002 18 1 1.6034 -1.7547 -9.2893 19 1 3.2659 -0.4715 -8.0769 20 8 1.4715 -2.4260 -3.6068 21 1 -0.3633 0.5140 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5139 0.8900 25 1 1.6768 1.9562 0.8901 26 1 3.1301 1.4425 0.0005 27 1 1.6768 1.9563 -0.8899 28 1 1.6053 -0.2617 -2.1370 29 1 3.1263 -0.6443 -1.2952 30 1 2.0698 -2.6550 -0.3004 31 1 0.5488 -2.2723 -1.1421 32 1 2.5602 -4.9832 -1.8333 33 1 0.8117 -4.5783 -1.9211 34 1 1.1130 -5.6304 -4.0684 35 1 2.7900 -5.0152 -4.2326 36 1 0.5092 -0.5058 -6.6861 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394123589.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:27 Heat of formation + Delta-G solvation = -81.524486 kcal Electronic energy + Delta-G solvation = -14671.664779 eV Core-core repulsion = 12347.523935 eV Total energy + Delta-G solvation = -2324.140844 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.28115 -36.28686 -32.69854 -31.08007 -30.72735 -27.48157 -26.92382 -24.67515 -22.34749 -20.35334 -19.84342 -19.38064 -16.43618 -15.73282 -14.88820 -14.67366 -14.30106 -13.64606 -13.49176 -12.87050 -12.70793 -12.09392 -12.02477 -11.82781 -11.66337 -11.38437 -11.02787 -10.90627 -10.84906 -10.52242 -10.37428 -10.29750 -10.16026 -9.96361 -9.69222 -9.51035 -9.10498 -8.47209 -7.72452 -5.91990 -4.05448 3.32863 3.40641 3.44233 4.47765 5.03093 5.08662 5.19339 5.23595 5.49969 5.58342 5.64516 5.81045 5.83388 5.90876 5.99507 6.02629 6.06150 6.12602 6.20459 6.32952 6.39037 6.44344 6.52628 6.53821 6.66817 6.73540 6.77625 6.85717 7.01687 7.03854 7.72823 7.95029 8.36466 8.71122 9.13723 9.65779 11.14516 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.028725 B = 0.008668 C = 0.007223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.542141 B = 3229.533122 C = 3875.683639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 C -0.146 4.146 4 C -0.111 4.111 5 C -0.112 4.112 6 C 0.076 3.924 7 H 0.048 0.952 8 C -0.154 4.154 9 C -0.145 4.145 10 C 0.206 3.794 11 H 0.035 0.965 12 C -0.543 4.543 13 H 0.058 0.942 14 C 0.078 3.922 15 N -0.863 5.863 16 Si 0.887 3.113 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.283 1.283 20 O -0.354 6.354 21 H 0.057 0.943 22 H 0.056 0.944 23 H 0.044 0.956 24 H 0.061 0.939 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.303 0.190 10.896 10.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.203 4.203 4 C -0.148 4.148 5 C -0.150 4.150 6 C 0.017 3.983 7 H 0.066 0.934 8 C -0.192 4.192 9 C -0.183 4.183 10 C 0.150 3.850 11 H 0.053 0.947 12 C -0.581 4.581 13 H 0.076 0.924 14 C -0.127 4.127 15 N -0.499 5.499 16 Si 0.714 3.286 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.209 1.209 20 O -0.273 6.273 21 H 0.076 0.924 22 H 0.075 0.925 23 H 0.064 0.936 24 H 0.079 0.921 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.133 0.565 10.814 10.888 hybrid contribution 0.597 -0.004 -0.874 1.059 sum 1.730 0.561 9.940 10.105 Atomic orbital electron populations 1.21870 0.95501 1.01855 1.01184 1.21135 0.95874 0.95850 0.98626 1.21835 1.00661 0.96501 1.01349 1.21569 1.00172 0.95333 0.97742 1.21734 1.01299 0.95471 0.96472 1.22705 0.96138 0.91157 0.88280 0.93405 1.23263 1.00738 0.97436 0.97724 1.23190 1.01343 1.00156 0.93639 1.20262 0.95779 0.81246 0.87685 0.94686 1.21443 1.21891 1.09670 1.05109 0.92410 1.25047 0.94508 0.95856 0.97277 1.70053 1.29647 1.12726 1.37502 0.86646 0.79922 0.78255 0.83744 1.19758 1.20961 1.20936 1.88746 1.77361 1.34569 1.26665 0.92414 0.92467 0.93643 0.92052 0.93367 0.93025 0.92553 0.90453 0.92757 0.92639 0.91690 0.92145 0.91753 0.92521 0.91778 0.93180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 8.95 37.16 0.33 -1.65 16 2 C -0.10 -1.32 2.92 -90.62 -0.26 -1.59 16 3 C -0.15 -1.83 9.19 37.16 0.34 -1.49 16 4 C -0.11 -1.86 4.60 -26.74 -0.12 -1.98 16 5 C -0.11 -1.92 4.71 -26.74 -0.13 -2.05 16 6 C 0.08 1.57 3.43 -25.70 -0.09 1.48 16 7 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 8 C -0.15 -2.84 6.57 -24.48 -0.16 -3.00 16 9 C -0.15 -3.10 6.53 -24.78 -0.16 -3.26 16 10 C 0.21 5.45 3.36 -27.16 -0.09 5.36 16 11 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 12 C -0.54 -15.62 8.75 -34.44 -0.30 -15.92 16 13 H 0.06 1.62 7.52 -52.49 -0.39 1.23 16 14 C 0.08 2.28 5.41 -17.82 -0.10 2.18 16 15 N -0.86 -26.14 12.91 55.43 0.72 -25.42 16 16 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 17 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 20 O -0.35 -9.31 9.84 -35.23 -0.35 -9.66 16 21 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 22 H 0.06 0.78 6.57 -51.93 -0.34 0.44 16 23 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.08 1.56 7.91 -51.93 -0.41 1.15 16 29 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 1.14 6.57 -51.92 -0.34 0.80 16 32 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 33 H 0.06 1.12 8.06 -51.93 -0.42 0.70 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.06 1.36 7.66 -51.93 -0.40 0.97 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 288.32 15.07 4.34 4.34 Total: -1.00 -30.44 288.32 -7.56 -37.99 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -6.51 Total: -2.13 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: -0.74 Total: -21.92 kcal Atomic # 7 Polarization: -26.14 SS G_CDS: 0.72 Total: -25.42 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -0.35 Total: -9.66 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.44 -7.56 -37.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394123589.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.532 kcal (2) G-P(sol) polarization free energy of solvation -30.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds