Wall clock time and date at job start Mon Mar 30 2020 03:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 C 1.52994 * 109.47404 * 294.99916 * 4 2 1 6 6 C 1.52997 * 109.47404 * 180.02562 * 5 4 2 7 7 H 1.09004 * 110.27713 * 55.64018 * 6 5 4 8 8 C 1.54948 * 110.31123 * 177.83851 * 6 5 4 9 9 C 1.55311 * 100.94351 * 155.36242 * 8 6 5 10 10 C 1.54379 * 102.24925 * 325.86234 * 9 8 6 11 11 H 1.09004 * 109.83329 * 261.84252 * 10 9 8 12 12 C 1.50701 * 109.90461 * 140.91537 * 10 9 8 13 13 H 1.07995 * 119.99899 * 0.36777 * 12 10 9 14 14 C 1.37879 * 120.00119 * 180.36687 * 12 10 9 15 15 N 1.31517 * 120.00191 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 120.00083 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47045 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47092 * 119.99960 * 16 14 12 19 19 H 1.48497 * 109.47073 * 239.99964 * 16 14 12 20 20 O 1.43242 * 107.59241 * 21.35824 * 10 9 8 21 21 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 22 22 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 24 24 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 25 25 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 26 26 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 27 27 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 28 28 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 29 29 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 30 30 H 1.09000 * 109.47476 * 300.00087 * 5 4 2 31 31 H 1.09008 * 109.46970 * 60.00049 * 5 4 2 32 32 H 1.09010 * 111.12273 * 273.27394 * 8 6 5 33 33 H 1.08997 * 111.12765 * 37.43620 * 8 6 5 34 34 H 1.08995 * 110.84240 * 207.67498 * 9 8 6 35 35 H 1.08990 * 111.02321 * 84.13077 * 9 8 6 36 36 H 0.96991 * 119.99866 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6352 -2.1954 -1.1881 6 6 2.1457 -2.9167 -2.4370 7 1 3.2228 -2.7826 -2.5370 8 6 1.7932 -4.4240 -2.3694 9 6 1.7837 -4.7926 -3.8781 10 6 1.2457 -3.4996 -4.5278 11 1 0.1782 -3.6006 -4.7235 12 6 1.9784 -3.2299 -5.8168 13 1 2.7480 -3.9089 -6.1527 14 6 1.6660 -2.1162 -6.5673 15 7 0.7291 -1.2890 -6.1580 16 14 2.5736 -1.7823 -8.1654 17 1 3.5736 -2.8548 -8.4002 18 1 1.6034 -1.7547 -9.2893 19 1 3.2659 -0.4715 -8.0769 20 8 1.4715 -2.4260 -3.6068 21 1 -0.3633 0.5140 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5139 0.8900 25 1 1.6768 1.9562 0.8901 26 1 3.1301 1.4425 0.0005 27 1 1.6768 1.9563 -0.8899 28 1 1.6053 -0.2617 -2.1370 29 1 3.1263 -0.6443 -1.2952 30 1 2.0698 -2.6550 -0.3004 31 1 0.5488 -2.2723 -1.1421 32 1 2.5602 -4.9832 -1.8333 33 1 0.8117 -4.5783 -1.9211 34 1 1.1130 -5.6304 -4.0684 35 1 2.7900 -5.0152 -4.2326 36 1 0.5092 -0.5058 -6.6861 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394123589.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:26 Heat of formation + Delta-G solvation = -99.180402 kcal Electronic energy + Delta-G solvation = -14672.430397 eV Core-core repulsion = 12347.523935 eV Total energy + Delta-G solvation = -2324.906462 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.02393 -37.56877 -34.76538 -32.73407 -32.44815 -29.25210 -27.99310 -26.50082 -23.94771 -22.07761 -21.48050 -20.64953 -18.57845 -17.39227 -16.73668 -16.25199 -15.83650 -15.10298 -14.80537 -14.53114 -14.30291 -13.76560 -13.58870 -13.38231 -12.99534 -12.85182 -12.66344 -12.43452 -12.31592 -12.25691 -12.07020 -11.90789 -11.52486 -11.36418 -11.34675 -11.01393 -10.95398 -10.66333 -9.73531 -8.11820 -6.33596 1.37539 1.38546 1.50970 2.40169 3.08656 3.59312 3.81134 3.96285 4.05093 4.12439 4.26278 4.40049 4.48653 4.63282 4.66831 4.74624 4.81564 4.86017 4.91978 4.97689 5.02068 5.07634 5.13507 5.19145 5.26855 5.31174 5.35091 5.43543 5.57481 5.61221 5.68607 5.77820 6.20869 6.63483 7.11631 7.43744 8.95036 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.028725 B = 0.008668 C = 0.007223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.542141 B = 3229.533122 C = 3875.683639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 C -0.146 4.146 4 C -0.108 4.108 5 C -0.104 4.104 6 C 0.061 3.939 7 H 0.041 0.959 8 C -0.138 4.138 9 C -0.140 4.140 10 C 0.196 3.804 11 H -0.002 1.002 12 C -0.564 4.564 13 H 0.059 0.941 14 C 0.021 3.979 15 N -0.902 5.902 16 Si 0.958 3.042 17 H -0.262 1.262 18 H -0.275 1.275 19 H -0.281 1.281 20 O -0.389 6.389 21 H 0.034 0.966 22 H 0.054 0.946 23 H 0.069 0.931 24 H 0.085 0.915 25 H 0.069 0.931 26 H 0.056 0.944 27 H 0.038 0.962 28 H 0.030 0.970 29 H 0.055 0.945 30 H 0.093 0.907 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.371 -0.499 12.423 12.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 C -0.203 4.203 4 C -0.146 4.146 5 C -0.141 4.141 6 C 0.003 3.997 7 H 0.059 0.941 8 C -0.176 4.176 9 C -0.178 4.178 10 C 0.140 3.860 11 H 0.015 0.985 12 C -0.602 4.602 13 H 0.077 0.923 14 C -0.180 4.180 15 N -0.540 5.540 16 Si 0.783 3.217 17 H -0.186 1.186 18 H -0.200 1.200 19 H -0.207 1.207 20 O -0.309 6.309 21 H 0.053 0.947 22 H 0.073 0.927 23 H 0.088 0.912 24 H 0.104 0.896 25 H 0.088 0.912 26 H 0.076 0.924 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.111 0.889 31 H 0.077 0.923 32 H 0.116 0.884 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.207 -0.140 12.349 12.545 hybrid contribution 0.261 0.205 -1.312 1.354 sum 2.467 0.065 11.036 11.309 Atomic orbital electron populations 1.21867 0.95481 1.01747 1.01272 1.21116 0.95853 0.96382 0.97597 1.21831 1.01057 0.95780 1.01617 1.21516 0.99954 0.95508 0.97582 1.21699 1.01041 0.95354 0.96013 1.23055 0.95514 0.93391 0.87752 0.94104 1.23220 1.02717 0.95709 0.95921 1.23078 1.01238 0.98024 0.95410 1.20174 0.93688 0.83983 0.88142 0.98453 1.21867 1.21941 1.09830 1.06543 0.92282 1.25949 0.95358 0.95671 1.01043 1.70200 1.31341 1.13301 1.39139 0.85530 0.78796 0.78139 0.79255 1.18631 1.20044 1.20737 1.88672 1.78072 1.35498 1.28685 0.94659 0.92707 0.91200 0.89646 0.91155 0.92442 0.94239 0.95082 0.92661 0.88860 0.92279 0.88437 0.90452 0.90804 0.91839 0.93172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 8.95 71.98 0.64 -3.13 16 2 C -0.09 -2.34 2.92 -10.79 -0.03 -2.37 16 3 C -0.15 -3.43 9.19 71.98 0.66 -2.76 16 4 C -0.11 -3.61 4.60 30.59 0.14 -3.47 16 5 C -0.10 -3.40 4.71 30.59 0.14 -3.26 16 6 C 0.06 2.48 3.43 31.26 0.11 2.58 16 7 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 8 C -0.14 -4.76 6.57 32.05 0.21 -4.55 16 9 C -0.14 -5.84 6.53 31.86 0.21 -5.63 16 10 C 0.20 10.69 3.36 30.32 0.10 10.79 16 11 H 0.00 -0.14 8.14 -2.38 -0.02 -0.15 16 12 C -0.56 -33.17 8.75 25.60 0.22 -32.94 16 13 H 0.06 3.35 7.52 -2.91 -0.02 3.33 16 14 C 0.02 1.26 5.41 84.65 0.46 1.72 16 15 N -0.90 -56.64 12.91 21.45 0.28 -56.37 16 16 Si 0.96 45.54 29.54 68.60 2.03 47.57 16 17 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 18 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 19 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 20 O -0.39 -21.15 9.84 -148.98 -1.47 -22.61 16 21 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 22 H 0.05 1.42 6.57 -2.39 -0.02 1.41 16 23 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.03 1.30 7.91 -2.39 -0.02 1.28 16 29 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.06 2.01 6.57 -2.38 -0.02 2.00 16 32 H 0.10 2.67 8.14 -2.38 -0.02 2.66 16 33 H 0.08 2.47 8.06 -2.39 -0.02 2.46 16 34 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 35 H 0.06 2.63 7.66 -2.39 -0.02 2.61 16 36 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -68.12 288.32 4.71 -63.41 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 1.01 Total: 11.03 kcal Atomic # 6 Polarization: -45.90 SS G_CDS: 2.87 Total: -43.03 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: 0.28 Total: -56.37 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -1.47 Total: -22.61 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -68.12 4.71 -63.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394123589.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.770 kcal (2) G-P(sol) polarization free energy of solvation -68.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds