Wall clock time and date at job start Mon Mar 30 2020 03:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48494 * 109.47361 * 240.00277 * 3 2 1 5 5 H 1.48503 * 109.46954 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47294 * 119.99754 * 3 2 1 7 7 C 1.37876 * 119.99600 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 11 11 O 1.42897 * 109.46758 * 300.00069 * 9 7 2 12 12 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 13 13 C 1.52998 * 109.47160 * 184.99840 * 12 9 7 14 14 C 1.53002 * 109.46926 * 179.97438 * 13 12 9 15 15 C 1.52999 * 109.47628 * 295.00334 * 14 13 12 16 16 C 1.52997 * 109.47317 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.47060 * 59.99960 * 16 15 14 18 18 C 1.53002 * 109.47233 * 299.99657 * 17 16 15 19 19 C 1.52997 * 109.46817 * 60.00194 * 18 17 16 20 20 H 0.97006 * 120.00212 * 359.97438 * 1 2 3 21 21 H 0.96708 * 114.00092 * 299.99555 * 11 9 7 22 22 H 1.09000 * 109.46875 * 64.99633 * 12 9 7 23 23 H 1.08998 * 109.46934 * 304.99881 * 12 9 7 24 24 H 1.09000 * 109.47396 * 60.00111 * 13 12 9 25 25 H 1.08998 * 109.47230 * 299.99860 * 13 12 9 26 26 H 1.09002 * 109.47097 * 55.00131 * 14 13 12 27 27 H 1.08996 * 109.46929 * 59.99225 * 15 14 13 28 28 H 1.09002 * 109.46716 * 300.00030 * 15 14 13 29 29 H 1.09002 * 109.47153 * 299.99641 * 16 15 14 30 30 H 1.09001 * 109.46832 * 179.97438 * 16 15 14 31 31 H 1.08992 * 109.47399 * 59.99823 * 17 16 15 32 32 H 1.09004 * 109.46724 * 180.02562 * 17 16 15 33 33 H 1.08993 * 109.47662 * 180.02562 * 18 17 16 34 34 H 1.09002 * 109.47075 * 300.00932 * 18 17 16 35 35 H 1.09002 * 109.47153 * 60.00231 * 19 18 17 36 36 H 1.09001 * 109.47289 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 1 0.6246 -2.5563 -0.8919 11 8 0.4290 -2.5756 1.1647 12 6 2.2451 -3.6621 -0.0027 13 6 1.4842 -4.9834 -0.1296 14 6 2.4785 -6.1463 -0.1313 15 6 3.3577 -6.0639 -1.3807 16 6 4.3515 -7.2272 -1.3826 17 6 3.5860 -8.5519 -1.3841 18 6 2.7068 -8.6344 -0.1346 19 6 1.7130 -7.4711 -0.1327 20 1 -0.4851 0.8401 0.0004 21 1 0.9208 -2.5308 1.9962 22 1 2.8113 -3.6568 0.9286 23 1 2.9292 -3.5545 -0.8445 24 1 0.9180 -4.9887 -1.0610 25 1 0.8001 -5.0910 0.7121 26 1 3.1055 -6.0896 0.7585 27 1 3.9026 -5.1200 -1.3799 28 1 2.7307 -6.1207 -2.2705 29 1 4.9785 -7.1709 -0.4928 30 1 4.9775 -7.1687 -2.2730 31 1 2.9590 -8.6083 -2.2739 32 1 4.2941 -9.3807 -1.3851 33 1 2.1618 -9.5783 -0.1354 34 1 3.3339 -8.5780 0.7552 35 1 1.0860 -7.5275 -1.0225 36 1 1.0870 -7.5296 0.7577 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395117780.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:24 Heat of formation + Delta-G solvation = -101.147325 kcal Electronic energy + Delta-G solvation = -14424.777688 eV Core-core repulsion = 12099.785934 eV Total energy + Delta-G solvation = -2324.991754 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.66390 -35.98794 -33.02011 -32.03278 -30.64968 -29.23364 -26.25556 -23.53496 -22.44309 -20.92872 -19.82417 -19.51123 -16.73339 -15.36064 -14.67882 -14.52972 -14.28121 -13.96586 -13.82114 -13.67281 -12.80765 -12.52026 -12.09020 -11.87658 -11.65794 -11.25490 -10.98892 -10.92497 -10.88554 -10.80677 -10.56774 -10.24414 -10.12423 -10.01676 -9.70306 -9.51076 -8.88068 -8.50590 -7.98901 -5.94250 -4.12005 3.31920 3.37027 3.38976 4.43414 4.80073 4.86670 4.90436 5.32145 5.32615 5.35307 5.58677 5.62245 5.65193 5.65725 5.75611 5.98161 6.07876 6.08489 6.20469 6.25848 6.27437 6.28967 6.39407 6.42970 6.58258 6.68368 6.69402 6.93844 6.99519 7.22398 7.81671 7.94348 8.28193 8.91530 9.47098 9.66042 11.09913 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.057360 B = 0.006048 C = 0.005637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.024204 B = 4628.657486 C = 4965.755580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.077 3.923 3 Si 0.887 3.113 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.571 4.571 8 H 0.054 0.946 9 C 0.226 3.774 10 H 0.052 0.948 11 O -0.568 6.568 12 C -0.140 4.140 13 C -0.110 4.110 14 C -0.086 4.086 15 C -0.116 4.116 16 C -0.119 4.119 17 C -0.118 4.118 18 C -0.119 4.119 19 C -0.115 4.115 20 H 0.260 0.740 21 H 0.343 0.657 22 H 0.046 0.954 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.069 -14.122 -1.109 15.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.128 4.128 3 Si 0.715 3.285 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.609 4.609 8 H 0.072 0.928 9 C 0.169 3.831 10 H 0.070 0.930 11 O -0.370 6.370 12 C -0.178 4.178 13 C -0.147 4.147 14 C -0.105 4.105 15 C -0.154 4.154 16 C -0.157 4.157 17 C -0.156 4.156 18 C -0.156 4.156 19 C -0.152 4.152 20 H 0.070 0.930 21 H 0.186 0.814 22 H 0.065 0.935 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.413 -14.060 -1.583 15.149 hybrid contribution 1.001 1.050 0.327 1.487 sum 6.413 -13.010 -1.256 14.559 Atomic orbital electron populations 1.70071 1.05934 1.26377 1.47438 1.25063 0.94681 0.99075 0.93991 0.86766 0.79744 0.83367 0.78646 1.20206 1.21230 1.20202 1.21714 0.93100 0.91818 1.54278 0.92819 1.19381 0.88024 0.89938 0.85769 0.92988 1.86540 1.38634 1.96397 1.15431 1.22352 0.99476 0.95471 1.00497 1.21605 0.97471 0.94001 1.01632 1.21203 0.96895 0.94499 0.97873 1.21636 0.97514 0.98033 0.98167 1.21548 0.97918 0.94914 1.01322 1.21531 0.98488 0.97285 0.98300 1.21535 0.97890 0.98178 0.98031 1.21601 0.97578 0.94332 1.01703 0.93042 0.81372 0.93541 0.92596 0.92855 0.91980 0.91802 0.91432 0.92263 0.92297 0.92503 0.92223 0.92678 0.92583 0.92285 0.92228 0.92219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.10 12.84 55.43 0.71 -25.39 16 2 C 0.08 2.22 5.40 -17.82 -0.10 2.12 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.57 -16.07 8.76 -34.44 -0.30 -16.38 16 8 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 9 C 0.23 5.86 2.82 -27.89 -0.08 5.78 16 10 H 0.05 1.49 8.14 -51.93 -0.42 1.06 16 11 O -0.57 -14.94 12.27 -35.23 -0.43 -15.37 16 12 C -0.14 -2.89 4.59 -26.73 -0.12 -3.01 16 13 C -0.11 -1.94 4.58 -26.73 -0.12 -2.06 16 14 C -0.09 -1.24 2.19 -90.62 -0.20 -1.44 16 15 C -0.12 -1.58 4.96 -26.73 -0.13 -1.71 16 16 C -0.12 -1.37 5.92 -26.73 -0.16 -1.52 16 17 C -0.12 -1.24 5.92 -26.73 -0.16 -1.40 16 18 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 19 C -0.11 -1.44 5.20 -26.73 -0.14 -1.58 16 20 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 21 H 0.34 8.03 9.04 45.56 0.41 8.44 16 22 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.06 1.14 6.56 -51.93 -0.34 0.79 16 24 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.06 1.15 7.82 -51.93 -0.41 0.74 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.07 0.99 6.56 -51.93 -0.34 0.65 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 284.12 15.07 4.28 4.28 Total: -1.00 -30.14 284.12 -7.84 -37.98 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -5.71 Total: 4.62 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: -1.67 Total: -22.64 kcal Atomic # 7 Polarization: -26.10 SS G_CDS: 0.71 Total: -25.39 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.43 Total: -15.37 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.14 -7.84 -37.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395117780.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.167 kcal (2) G-P(sol) polarization free energy of solvation -30.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds