Wall clock time and date at job start Mon Mar 30 2020 03:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48494 * 109.47361 * 240.00277 * 3 2 1 5 5 H 1.48503 * 109.46954 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47294 * 119.99754 * 3 2 1 7 7 C 1.37876 * 119.99600 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 11 11 O 1.42897 * 109.46758 * 300.00069 * 9 7 2 12 12 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 13 13 C 1.52998 * 109.47160 * 184.99840 * 12 9 7 14 14 C 1.53002 * 109.46926 * 179.97438 * 13 12 9 15 15 C 1.52999 * 109.47628 * 295.00334 * 14 13 12 16 16 C 1.52997 * 109.47317 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.47060 * 59.99960 * 16 15 14 18 18 C 1.53002 * 109.47233 * 299.99657 * 17 16 15 19 19 C 1.52997 * 109.46817 * 60.00194 * 18 17 16 20 20 H 0.97006 * 120.00212 * 359.97438 * 1 2 3 21 21 H 0.96708 * 114.00092 * 299.99555 * 11 9 7 22 22 H 1.09000 * 109.46875 * 64.99633 * 12 9 7 23 23 H 1.08998 * 109.46934 * 304.99881 * 12 9 7 24 24 H 1.09000 * 109.47396 * 60.00111 * 13 12 9 25 25 H 1.08998 * 109.47230 * 299.99860 * 13 12 9 26 26 H 1.09002 * 109.47097 * 55.00131 * 14 13 12 27 27 H 1.08996 * 109.46929 * 59.99225 * 15 14 13 28 28 H 1.09002 * 109.46716 * 300.00030 * 15 14 13 29 29 H 1.09002 * 109.47153 * 299.99641 * 16 15 14 30 30 H 1.09001 * 109.46832 * 179.97438 * 16 15 14 31 31 H 1.08992 * 109.47399 * 59.99823 * 17 16 15 32 32 H 1.09004 * 109.46724 * 180.02562 * 17 16 15 33 33 H 1.08993 * 109.47662 * 180.02562 * 18 17 16 34 34 H 1.09002 * 109.47075 * 300.00932 * 18 17 16 35 35 H 1.09002 * 109.47153 * 60.00231 * 19 18 17 36 36 H 1.09001 * 109.47289 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 1 0.6246 -2.5563 -0.8919 11 8 0.4290 -2.5756 1.1647 12 6 2.2451 -3.6621 -0.0027 13 6 1.4842 -4.9834 -0.1296 14 6 2.4785 -6.1463 -0.1313 15 6 3.3577 -6.0639 -1.3807 16 6 4.3515 -7.2272 -1.3826 17 6 3.5860 -8.5519 -1.3841 18 6 2.7068 -8.6344 -0.1346 19 6 1.7130 -7.4711 -0.1327 20 1 -0.4851 0.8401 0.0004 21 1 0.9208 -2.5308 1.9962 22 1 2.8113 -3.6568 0.9286 23 1 2.9292 -3.5545 -0.8445 24 1 0.9180 -4.9887 -1.0610 25 1 0.8001 -5.0910 0.7121 26 1 3.1055 -6.0896 0.7585 27 1 3.9026 -5.1200 -1.3799 28 1 2.7307 -6.1207 -2.2705 29 1 4.9785 -7.1709 -0.4928 30 1 4.9775 -7.1687 -2.2730 31 1 2.9590 -8.6083 -2.2739 32 1 4.2941 -9.3807 -1.3851 33 1 2.1618 -9.5783 -0.1354 34 1 3.3339 -8.5780 0.7552 35 1 1.0860 -7.5275 -1.0225 36 1 1.0870 -7.5296 0.7577 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395117780.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:24 Heat of formation + Delta-G solvation = -119.628916 kcal Electronic energy + Delta-G solvation = -14425.579110 eV Core-core repulsion = 12099.785934 eV Total energy + Delta-G solvation = -2325.793176 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.78286 -37.89239 -34.48869 -34.17657 -31.62461 -30.80455 -28.08439 -25.15417 -23.51098 -22.39205 -21.38004 -20.54753 -18.87322 -16.69122 -16.57251 -16.13851 -16.00094 -15.18450 -15.02779 -14.87275 -14.50270 -13.91854 -13.50731 -13.27378 -13.03306 -12.89826 -12.77731 -12.54955 -12.26809 -12.00257 -11.95249 -11.82114 -11.49554 -11.27703 -11.02241 -10.84792 -10.73191 -10.66425 -10.01042 -8.12641 -6.38991 1.39595 1.41693 1.49949 2.39261 3.12416 3.78410 3.86232 3.94063 4.22775 4.26615 4.36764 4.48529 4.53069 4.62282 4.65258 4.70375 4.82068 4.87718 4.92968 5.07071 5.14035 5.19500 5.25267 5.30866 5.36155 5.40439 5.47548 5.48696 5.59045 5.66740 5.68044 5.84746 6.12096 6.73739 7.33846 7.57262 8.91542 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.057360 B = 0.006048 C = 0.005637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.024204 B = 4628.657486 C = 4965.755580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.960 3.040 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.588 4.588 8 H 0.058 0.942 9 C 0.222 3.778 10 H 0.015 0.985 11 O -0.582 6.582 12 C -0.124 4.124 13 C -0.101 4.101 14 C -0.079 4.079 15 C -0.117 4.117 16 C -0.116 4.116 17 C -0.117 4.117 18 C -0.116 4.116 19 C -0.114 4.114 20 H 0.261 0.739 21 H 0.355 0.645 22 H 0.053 0.947 23 H 0.058 0.942 24 H 0.042 0.958 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.667 -14.965 -0.959 16.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.180 4.180 3 Si 0.785 3.215 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.626 4.626 8 H 0.077 0.923 9 C 0.165 3.835 10 H 0.032 0.968 11 O -0.386 6.386 12 C -0.162 4.162 13 C -0.139 4.139 14 C -0.098 4.098 15 C -0.154 4.154 16 C -0.154 4.154 17 C -0.155 4.155 18 C -0.153 4.153 19 C -0.151 4.151 20 H 0.070 0.930 21 H 0.200 0.800 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.028 -14.916 -1.430 16.551 hybrid contribution 0.464 1.305 0.282 1.414 sum 7.492 -13.611 -1.148 15.579 Atomic orbital electron populations 1.70219 1.07757 1.27390 1.48706 1.25964 0.95515 1.03078 0.93427 0.85607 0.78372 0.78409 0.79155 1.19292 1.20938 1.19115 1.22127 0.93518 0.93031 1.53918 0.92340 1.19313 0.88107 0.91655 0.84404 0.96753 1.86475 1.39478 1.96523 1.16161 1.22108 0.98301 0.94875 1.00896 1.21503 0.97765 0.94031 1.00611 1.21120 0.96240 0.93997 0.98425 1.21623 0.97762 0.98604 0.97447 1.21528 0.97474 0.94384 1.01997 1.21540 0.98691 0.97199 0.98059 1.21522 0.97574 0.97788 0.98427 1.21579 0.97902 0.94050 1.01582 0.93024 0.80017 0.92811 0.92386 0.93917 0.92955 0.91618 0.92809 0.92738 0.91966 0.91525 0.92254 0.90845 0.91084 0.91902 0.92531 0.92266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.58 12.84 21.45 0.28 -55.30 16 2 C 0.02 1.27 5.40 84.66 0.46 1.72 16 3 Si 0.96 44.14 29.54 68.60 2.03 46.16 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.59 -33.31 8.76 25.60 0.22 -33.08 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 9 C 0.22 11.80 2.82 29.85 0.08 11.88 16 10 H 0.01 0.87 8.14 -2.39 -0.02 0.85 16 11 O -0.58 -31.26 12.27 -148.98 -1.83 -33.08 16 12 C -0.12 -5.13 4.59 30.59 0.14 -4.99 16 13 C -0.10 -3.60 4.58 30.59 0.14 -3.46 16 14 C -0.08 -2.20 2.19 -10.79 -0.02 -2.22 16 15 C -0.12 -3.05 4.96 30.59 0.15 -2.90 16 16 C -0.12 -2.39 5.92 30.59 0.18 -2.21 16 17 C -0.12 -2.12 5.92 30.60 0.18 -1.94 16 18 C -0.12 -2.18 5.92 30.59 0.18 -2.00 16 19 C -0.11 -2.69 5.20 30.60 0.16 -2.53 16 20 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 21 H 0.36 16.79 9.04 -74.05 -0.67 16.12 16 22 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 23 H 0.06 2.36 6.56 -2.39 -0.02 2.34 16 24 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.05 1.94 7.82 -2.39 -0.02 1.92 16 26 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.05 1.53 6.56 -2.39 -0.02 1.52 16 28 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -64.16 284.12 2.71 -61.46 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.36 Total: 22.51 kcal Atomic # 6 Polarization: -43.62 SS G_CDS: 1.88 Total: -41.74 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: 0.28 Total: -55.30 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -1.83 Total: -33.08 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -64.16 2.71 -61.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395117780.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.172 kcal (2) G-P(sol) polarization free energy of solvation -64.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds