Wall clock time and date at job start Mon Mar 30 2020 03:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47134 * 2 1 4 4 C 1.52999 * 109.46995 * 180.75839 * 3 2 1 5 5 O 1.42901 * 109.47186 * 59.20786 * 4 3 2 6 6 C 1.50705 * 109.47007 * 299.20735 * 4 3 2 7 7 H 1.07995 * 120.00249 * 263.49163 * 6 4 3 8 8 C 1.37880 * 119.99499 * 83.49506 * 6 4 3 9 9 N 1.31517 * 119.99232 * 208.25318 * 8 6 4 10 10 Si 1.86795 * 120.00233 * 28.52814 * 8 6 4 11 11 H 1.48501 * 109.47273 * 273.84402 * 10 8 6 12 12 H 1.48500 * 109.47137 * 33.84882 * 10 8 6 13 13 H 1.48499 * 109.46805 * 153.84670 * 10 8 6 14 14 C 1.53000 * 109.46900 * 179.21083 * 4 3 2 15 15 H 1.08996 * 115.55246 * 42.59166 * 14 4 3 16 16 C 1.53002 * 117.49768 * 188.26053 * 14 4 3 17 17 C 1.52999 * 59.99986 * 107.49094 * 16 14 4 18 18 C 1.53003 * 117.49387 * 252.51104 * 17 16 14 19 19 C 1.52989 * 117.50000 * 107.49414 * 17 16 14 20 20 H 1.09000 * 109.47060 * 184.95438 * 1 2 3 21 21 H 1.08992 * 109.47291 * 304.95372 * 1 2 3 22 22 H 1.09004 * 109.46793 * 64.95562 * 1 2 3 23 23 H 1.09000 * 109.47264 * 239.99811 * 2 1 3 24 24 H 1.09005 * 109.46556 * 119.99980 * 2 1 3 25 25 H 1.09002 * 109.47231 * 60.75469 * 3 2 1 26 26 H 1.09002 * 109.47181 * 300.76017 * 3 2 1 27 27 H 0.96695 * 113.99586 * 178.86946 * 5 4 3 28 28 H 0.97001 * 119.99298 * 180.27397 * 9 8 6 29 29 H 1.09004 * 117.49794 * 214.97857 * 16 14 4 30 30 H 1.09001 * 117.49627 * 359.97354 * 16 14 4 31 31 H 1.08999 * 109.47018 * 113.88358 * 18 17 16 32 32 H 1.09004 * 109.47168 * 233.88412 * 18 17 16 33 33 H 1.09000 * 109.47362 * 353.88137 * 18 17 16 34 34 H 1.09002 * 109.47602 * 351.37131 * 19 17 16 35 35 H 1.09000 * 109.47364 * 111.37666 * 19 17 16 36 36 H 1.09005 * 109.47297 * 231.37415 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5699 1.4425 -0.0191 5 8 4.0318 0.7579 -1.1853 6 6 4.0876 0.7437 1.2117 7 1 4.3784 1.3197 2.0777 8 6 4.1901 -0.6311 1.2320 9 7 4.0912 -1.2810 2.3711 10 14 4.4771 -1.5700 -0.3572 11 1 3.1731 -1.8436 -1.0129 12 1 5.3271 -0.7584 -1.2650 13 1 5.1593 -2.8544 -0.0569 14 6 4.0797 2.8850 -0.0390 15 1 3.5621 3.5757 0.6266 16 6 5.5788 3.1015 -0.2547 17 6 4.5889 3.4360 -1.3723 18 6 4.5495 2.5023 -2.5838 19 6 4.3326 4.9146 -1.6699 20 1 -0.3633 -1.0238 0.0888 21 1 -0.3633 0.5887 0.8422 22 1 -0.3633 0.4351 -0.9311 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8901 25 1 1.6878 1.9524 0.8967 26 1 1.6656 1.9603 -0.8831 27 1 4.9945 0.7341 -1.2720 28 1 4.1673 -2.2479 2.3859 29 1 6.0474 3.9350 0.2687 30 1 6.2020 2.2163 -0.3820 31 1 3.5867 1.9925 -2.6184 32 1 4.6857 3.0840 -3.4955 33 1 5.3481 1.7651 -2.5006 34 1 4.8088 5.5272 -0.9044 35 1 4.7470 5.1660 -2.6462 36 1 3.2592 5.1042 -1.6711 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397700083.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:26 Heat of formation + Delta-G solvation = -19.828082 kcal Electronic energy + Delta-G solvation = -15599.546296 eV Core-core repulsion = 13278.080809 eV Total energy + Delta-G solvation = -2321.465487 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.15472 -35.49065 -33.37443 -32.09221 -29.76808 -27.74049 -26.90459 -24.95324 -23.02156 -20.20158 -19.27465 -18.63984 -16.90807 -15.63756 -15.11834 -14.12024 -13.91195 -13.55954 -13.28795 -12.86843 -12.68808 -12.28242 -12.09176 -11.80689 -11.58200 -11.49070 -11.03750 -10.94665 -10.87325 -10.62624 -10.50074 -9.90157 -9.67629 -9.60853 -9.34756 -8.92324 -8.70097 -8.26753 -7.67133 -6.15362 -4.08046 3.42161 3.59089 3.67817 4.43546 4.56739 5.14167 5.27811 5.35712 5.56246 5.63387 5.67673 5.92247 5.97406 6.05567 6.10125 6.17450 6.24614 6.30194 6.46538 6.51347 6.54567 6.56431 6.62878 6.72389 6.78496 6.88529 6.96642 7.10483 7.25431 7.49849 7.51490 7.80288 8.28564 8.79661 9.01316 9.58408 10.93742 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.028264 B = 0.014238 C = 0.012179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.416067 B = 1966.153678 C = 2298.408001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.130 4.130 3 C -0.081 4.081 4 C 0.250 3.750 5 O -0.567 6.567 6 C -0.566 4.566 7 H 0.073 0.927 8 C 0.084 3.916 9 N -0.871 5.871 10 Si 0.945 3.055 11 H -0.278 1.278 12 H -0.293 1.293 13 H -0.337 1.337 14 C -0.135 4.135 15 H 0.091 0.909 16 C -0.169 4.169 17 C -0.143 4.143 18 C -0.103 4.103 19 C -0.108 4.108 20 H 0.042 0.958 21 H 0.047 0.953 22 H 0.040 0.960 23 H 0.060 0.940 24 H 0.086 0.914 25 H 0.058 0.942 26 H 0.034 0.966 27 H 0.372 0.628 28 H 0.263 0.737 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.029 0.971 33 H 0.051 0.949 34 H 0.049 0.951 35 H 0.051 0.949 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.181 6.594 -7.238 9.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C -0.119 4.119 4 C 0.211 3.789 5 O -0.382 6.382 6 C -0.602 4.602 7 H 0.091 0.909 8 C -0.121 4.121 9 N -0.506 5.506 10 Si 0.784 3.216 11 H -0.205 1.205 12 H -0.223 1.223 13 H -0.270 1.270 14 C -0.154 4.154 15 H 0.110 0.890 16 C -0.206 4.206 17 C -0.143 4.143 18 C -0.160 4.160 19 C -0.165 4.165 20 H 0.061 0.939 21 H 0.066 0.934 22 H 0.059 0.941 23 H 0.078 0.922 24 H 0.104 0.896 25 H 0.076 0.924 26 H 0.053 0.947 27 H 0.227 0.773 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.048 0.952 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.831 6.377 -7.189 9.783 hybrid contribution 0.858 -0.367 -0.442 1.033 sum -0.973 6.010 -7.632 9.763 Atomic orbital electron populations 1.21791 0.98077 1.00254 1.00292 1.21713 0.93126 0.98233 1.03695 1.21440 0.95366 0.96146 0.98932 1.18815 0.91072 0.85241 0.83745 1.86486 1.27625 1.76764 1.47346 1.21075 1.47782 0.91798 0.99547 0.90900 1.25038 0.92702 0.97627 0.96736 1.70207 1.44640 1.08297 1.27436 0.86254 0.78054 0.74612 0.82639 1.20494 1.22327 1.26992 1.23195 0.95798 0.99811 0.96592 0.89047 1.23070 0.93571 1.02078 1.01883 1.21652 1.05942 0.95244 0.91456 1.21592 1.03868 0.96819 0.93705 1.21309 1.00927 0.93691 1.00613 0.93920 0.93433 0.94083 0.92156 0.89592 0.92367 0.94732 0.77295 0.92789 0.90173 0.89258 0.89731 0.95197 0.93065 0.93197 0.92987 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.91 37.16 0.37 -2.29 16 2 C -0.13 -2.87 4.32 -26.73 -0.12 -2.99 16 3 C -0.08 -1.73 4.47 -26.73 -0.12 -1.85 16 4 C 0.25 5.60 0.68 -91.77 -0.06 5.54 16 5 O -0.57 -12.44 4.35 -35.23 -0.15 -12.59 16 6 C -0.57 -15.08 8.14 -34.44 -0.28 -15.36 16 7 H 0.07 2.15 8.05 -52.49 -0.42 1.72 16 8 C 0.08 2.32 3.59 -17.82 -0.06 2.26 16 9 N -0.87 -25.64 13.96 55.43 0.77 -24.86 16 10 Si 0.95 23.41 23.73 -169.99 -4.03 19.37 16 11 H -0.28 -6.88 5.65 56.52 0.32 -6.56 16 12 H -0.29 -6.76 5.02 56.52 0.28 -6.47 16 13 H -0.34 -8.69 7.11 56.52 0.40 -8.29 16 14 C -0.14 -2.66 4.74 -90.62 -0.43 -3.09 16 15 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 16 C -0.17 -3.06 9.09 -26.73 -0.24 -3.30 16 17 C -0.14 -2.41 2.70 -154.51 -0.42 -2.83 16 18 C -0.10 -1.72 8.00 37.16 0.30 -1.42 16 19 C -0.11 -1.53 9.82 37.15 0.36 -1.17 16 20 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 21 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.06 1.39 5.39 -51.93 -0.28 1.11 16 24 H 0.09 2.17 5.80 -51.93 -0.30 1.87 16 25 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.37 7.99 3.32 45.56 0.15 8.15 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.08 1.33 8.05 -51.93 -0.42 0.91 16 30 H 0.09 1.69 7.23 -51.93 -0.38 1.32 16 31 H 0.08 1.54 6.48 -51.93 -0.34 1.20 16 32 H 0.03 0.43 7.75 -51.93 -0.40 0.03 16 33 H 0.05 0.86 5.99 -51.93 -0.31 0.55 16 34 H 0.05 0.66 7.90 -51.93 -0.41 0.25 16 35 H 0.05 0.66 7.84 -51.93 -0.41 0.25 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 264.38 15.07 3.98 3.98 Total: -1.00 -27.92 264.38 -5.94 -33.86 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -5.81 Total: 6.75 kcal Atomic # 6 Polarization: -25.81 SS G_CDS: -0.70 Total: -26.51 kcal Atomic # 7 Polarization: -25.64 SS G_CDS: 0.77 Total: -24.86 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -0.15 Total: -12.59 kcal Atomic # 14 Polarization: 23.41 SS G_CDS: -4.03 Total: 19.37 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -27.92 -5.94 -33.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397700083.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.035 kcal (2) G-P(sol) polarization free energy of solvation -27.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds