Wall clock time and date at job start Mon Mar 30 2020 03:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47134 * 2 1 4 4 C 1.52999 * 109.46995 * 180.75839 * 3 2 1 5 5 O 1.42901 * 109.47186 * 59.20786 * 4 3 2 6 6 C 1.50705 * 109.47007 * 299.20735 * 4 3 2 7 7 H 1.07995 * 120.00249 * 263.49163 * 6 4 3 8 8 C 1.37880 * 119.99499 * 83.49506 * 6 4 3 9 9 N 1.31517 * 119.99232 * 208.25318 * 8 6 4 10 10 Si 1.86795 * 120.00233 * 28.52814 * 8 6 4 11 11 H 1.48501 * 109.47273 * 273.84402 * 10 8 6 12 12 H 1.48500 * 109.47137 * 33.84882 * 10 8 6 13 13 H 1.48499 * 109.46805 * 153.84670 * 10 8 6 14 14 C 1.53000 * 109.46900 * 179.21083 * 4 3 2 15 15 H 1.08996 * 115.55246 * 42.59166 * 14 4 3 16 16 C 1.53002 * 117.49768 * 188.26053 * 14 4 3 17 17 C 1.52999 * 59.99986 * 107.49094 * 16 14 4 18 18 C 1.53003 * 117.49387 * 252.51104 * 17 16 14 19 19 C 1.52989 * 117.50000 * 107.49414 * 17 16 14 20 20 H 1.09000 * 109.47060 * 184.95438 * 1 2 3 21 21 H 1.08992 * 109.47291 * 304.95372 * 1 2 3 22 22 H 1.09004 * 109.46793 * 64.95562 * 1 2 3 23 23 H 1.09000 * 109.47264 * 239.99811 * 2 1 3 24 24 H 1.09005 * 109.46556 * 119.99980 * 2 1 3 25 25 H 1.09002 * 109.47231 * 60.75469 * 3 2 1 26 26 H 1.09002 * 109.47181 * 300.76017 * 3 2 1 27 27 H 0.96695 * 113.99586 * 178.86946 * 5 4 3 28 28 H 0.97001 * 119.99298 * 180.27397 * 9 8 6 29 29 H 1.09004 * 117.49794 * 214.97857 * 16 14 4 30 30 H 1.09001 * 117.49627 * 359.97354 * 16 14 4 31 31 H 1.08999 * 109.47018 * 113.88358 * 18 17 16 32 32 H 1.09004 * 109.47168 * 233.88412 * 18 17 16 33 33 H 1.09000 * 109.47362 * 353.88137 * 18 17 16 34 34 H 1.09002 * 109.47602 * 351.37131 * 19 17 16 35 35 H 1.09000 * 109.47364 * 111.37666 * 19 17 16 36 36 H 1.09005 * 109.47297 * 231.37415 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5699 1.4425 -0.0191 5 8 4.0318 0.7579 -1.1853 6 6 4.0876 0.7437 1.2117 7 1 4.3784 1.3197 2.0777 8 6 4.1901 -0.6311 1.2320 9 7 4.0912 -1.2810 2.3711 10 14 4.4771 -1.5700 -0.3572 11 1 3.1731 -1.8436 -1.0129 12 1 5.3271 -0.7584 -1.2650 13 1 5.1593 -2.8544 -0.0569 14 6 4.0797 2.8850 -0.0390 15 1 3.5621 3.5757 0.6266 16 6 5.5788 3.1015 -0.2547 17 6 4.5889 3.4360 -1.3723 18 6 4.5495 2.5023 -2.5838 19 6 4.3326 4.9146 -1.6699 20 1 -0.3633 -1.0238 0.0888 21 1 -0.3633 0.5887 0.8422 22 1 -0.3633 0.4351 -0.9311 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8901 25 1 1.6878 1.9524 0.8967 26 1 1.6656 1.9603 -0.8831 27 1 4.9945 0.7341 -1.2720 28 1 4.1673 -2.2479 2.3859 29 1 6.0474 3.9350 0.2687 30 1 6.2020 2.2163 -0.3820 31 1 3.5867 1.9925 -2.6184 32 1 4.6857 3.0840 -3.4955 33 1 5.3481 1.7651 -2.5006 34 1 4.8088 5.5272 -0.9044 35 1 4.7470 5.1660 -2.6462 36 1 3.2592 5.1042 -1.6711 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397700083.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:25 Heat of formation + Delta-G solvation = -36.502960 kcal Electronic energy + Delta-G solvation = -15600.269373 eV Core-core repulsion = 13278.080809 eV Total energy + Delta-G solvation = -2322.188564 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.75379 -37.10260 -35.10642 -34.15989 -31.35352 -29.18972 -28.13845 -26.94210 -24.65239 -21.80156 -21.02891 -20.20193 -18.76389 -17.50731 -16.83082 -15.88152 -15.58183 -15.03023 -14.84884 -14.37649 -14.29285 -14.01037 -13.69823 -13.25225 -13.11945 -12.92941 -12.75607 -12.63610 -12.44750 -12.27837 -11.97211 -11.71556 -11.45114 -11.30094 -11.14081 -10.41374 -10.36325 -10.30167 -9.46086 -8.32050 -6.25816 1.41987 1.53510 1.67683 2.48526 2.98220 3.04932 3.79873 3.88208 4.08577 4.17093 4.37038 4.37830 4.40054 4.57866 4.78383 4.87364 4.90140 4.93343 5.03759 5.06482 5.13721 5.16424 5.19179 5.25924 5.30583 5.37614 5.46385 5.52006 5.62652 5.74468 5.76202 5.89860 6.18601 6.73739 7.02750 7.45288 8.80834 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.028264 B = 0.014238 C = 0.012179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.416067 B = 1966.153678 C = 2298.408001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.129 4.129 3 C -0.079 4.079 4 C 0.252 3.748 5 O -0.562 6.562 6 C -0.563 4.563 7 H 0.032 0.968 8 C 0.044 3.956 9 N -0.918 5.918 10 Si 0.992 3.008 11 H -0.275 1.275 12 H -0.265 1.265 13 H -0.352 1.352 14 C -0.162 4.162 15 H 0.090 0.910 16 C -0.174 4.174 17 C -0.117 4.117 18 C -0.105 4.105 19 C -0.107 4.107 20 H 0.049 0.951 21 H 0.053 0.947 22 H 0.064 0.936 23 H 0.049 0.951 24 H 0.046 0.954 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.374 0.626 28 H 0.262 0.738 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.046 0.954 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.554 8.098 -9.733 12.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.167 4.167 3 C -0.117 4.117 4 C 0.213 3.787 5 O -0.377 6.377 6 C -0.599 4.599 7 H 0.050 0.950 8 C -0.157 4.157 9 N -0.555 5.555 10 Si 0.830 3.170 11 H -0.202 1.202 12 H -0.193 1.193 13 H -0.287 1.287 14 C -0.181 4.181 15 H 0.108 0.892 16 C -0.211 4.211 17 C -0.117 4.117 18 C -0.161 4.161 19 C -0.164 4.164 20 H 0.068 0.932 21 H 0.072 0.928 22 H 0.083 0.917 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.229 0.771 28 H 0.070 0.930 29 H 0.113 0.887 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.200 7.912 -9.706 12.713 hybrid contribution 0.971 -0.791 0.403 1.316 sum -1.229 7.120 -9.303 11.779 Atomic orbital electron populations 1.21729 0.94982 1.01257 1.01860 1.21625 0.96005 0.97931 1.01123 1.21400 0.94551 0.96004 0.99708 1.18675 0.91625 0.86505 0.81880 1.86478 1.27786 1.76844 1.46553 1.21311 1.46820 0.91635 1.00162 0.94975 1.25677 0.92488 0.98539 0.98948 1.70307 1.47204 1.08445 1.29584 0.85429 0.78382 0.73197 0.79998 1.20164 1.19329 1.28687 1.23021 0.97114 0.98196 0.99726 0.89211 1.23124 0.92604 1.02235 1.03134 1.21776 1.02799 0.97013 0.90127 1.21568 1.02891 0.97003 0.94669 1.21341 1.01687 0.91359 1.02010 0.93160 0.92758 0.91733 0.93240 0.93517 0.92892 0.92369 0.77102 0.92956 0.88728 0.90493 0.91064 0.92475 0.93534 0.92486 0.90920 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.82 9.91 71.98 0.71 -4.11 16 2 C -0.13 -5.60 4.32 30.60 0.13 -5.47 16 3 C -0.08 -3.28 4.47 30.59 0.14 -3.15 16 4 C 0.25 11.13 0.68 -11.54 -0.01 11.12 16 5 O -0.56 -23.62 4.35 -148.98 -0.65 -24.27 16 6 C -0.56 -30.71 8.14 25.60 0.21 -30.50 16 7 H 0.03 1.98 8.05 -2.91 -0.02 1.95 16 8 C 0.04 2.50 3.59 84.65 0.30 2.81 16 9 N -0.92 -56.13 13.96 21.45 0.30 -55.83 16 10 Si 0.99 48.29 23.73 68.60 1.63 49.92 16 11 H -0.27 -13.20 5.65 99.48 0.56 -12.64 16 12 H -0.27 -11.52 5.02 99.48 0.50 -11.02 16 13 H -0.35 -18.00 7.11 99.48 0.71 -17.29 16 14 C -0.16 -6.16 4.74 -10.79 -0.05 -6.21 16 15 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 16 C -0.17 -6.01 9.09 30.59 0.28 -5.73 16 17 C -0.12 -3.59 2.70 -52.18 -0.14 -3.74 16 18 C -0.10 -3.11 8.00 71.98 0.58 -2.54 16 19 C -0.11 -2.58 9.82 71.98 0.71 -1.87 16 20 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 21 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 22 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 23 H 0.05 2.22 5.39 -2.39 -0.01 2.20 16 24 H 0.05 2.39 5.80 -2.38 -0.01 2.37 16 25 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.37 15.30 3.32 -74.06 -0.25 15.05 16 28 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 29 H 0.09 2.95 8.05 -2.38 -0.02 2.93 16 30 H 0.08 2.83 7.23 -2.39 -0.02 2.82 16 31 H 0.07 2.35 6.48 -2.39 -0.02 2.33 16 32 H 0.06 1.40 7.75 -2.38 -0.02 1.38 16 33 H 0.05 1.42 5.99 -2.39 -0.01 1.41 16 34 H 0.06 1.30 7.90 -2.39 -0.02 1.29 16 35 H 0.07 1.48 7.84 -2.39 -0.02 1.47 16 36 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 Total: -1.00 -61.06 264.38 4.58 -56.48 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: 0.44 Total: 23.09 kcal Atomic # 6 Polarization: -52.24 SS G_CDS: 2.86 Total: -49.38 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: 0.30 Total: -55.83 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.65 Total: -24.27 kcal Atomic # 14 Polarization: 48.29 SS G_CDS: 1.63 Total: 49.92 kcal Total: -61.06 4.58 -56.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397700083.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.976 kcal (2) G-P(sol) polarization free energy of solvation -61.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds