Wall clock time and date at job start Mon Mar 30 2020 02:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46921 * 2 1 4 4 C 1.50697 * 109.46641 * 119.99771 * 2 1 3 5 5 H 1.08001 * 119.99643 * 120.00372 * 4 2 1 6 6 C 1.37870 * 120.00496 * 299.99987 * 4 2 1 7 7 N 1.31519 * 119.99928 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00372 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47187 * 59.99850 * 8 6 4 10 10 H 1.48504 * 109.46953 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46725 * 299.99682 * 8 6 4 12 12 N 1.46496 * 109.47178 * 239.99986 * 2 1 3 13 13 C 1.34781 * 120.00180 * 85.00262 * 12 2 1 14 14 O 1.21271 * 119.99816 * 359.97438 * 13 12 2 15 15 C 1.50696 * 119.99894 * 180.02562 * 13 12 2 16 16 C 1.53002 * 109.46941 * 181.85736 * 15 13 12 17 17 N 1.46898 * 115.54887 * 280.05390 * 16 15 13 18 18 C 1.53000 * 117.49701 * 134.34998 * 16 15 13 19 19 C 1.52996 * 117.49819 * 65.72413 * 16 15 13 20 20 H 1.09006 * 109.46998 * 60.00345 * 1 2 3 21 21 H 1.09001 * 109.47605 * 300.00298 * 1 2 3 22 22 H 1.09001 * 109.47433 * 179.97438 * 1 2 3 23 23 H 0.96999 * 120.00044 * 179.97438 * 7 6 4 24 24 H 0.96996 * 119.99853 * 264.99935 * 12 2 1 25 25 H 1.09003 * 109.47273 * 301.85322 * 15 13 12 26 26 H 1.09002 * 109.47520 * 61.85641 * 15 13 12 27 27 H 1.00902 * 111.00034 * 295.78049 * 17 16 15 28 28 H 1.00902 * 110.99923 * 59.73493 * 17 16 15 29 29 H 1.08998 * 117.50004 * 359.97438 * 18 16 15 30 30 H 1.09002 * 117.49717 * 145.02175 * 18 16 15 31 31 H 1.09001 * 117.49521 * 214.97731 * 19 16 15 32 32 H 1.08997 * 117.49863 * 0.02562 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4827 7 7 0.9435 0.8303 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.8072 -1.1190 4.0079 10 1 1.8266 -0.4198 5.2205 11 1 1.8277 -2.5198 4.0082 12 7 2.0183 -0.6906 -1.1961 13 6 2.1471 -0.0182 -2.3571 14 8 1.8583 1.1583 -2.4117 15 6 2.6489 -0.7288 -3.5877 16 6 2.7446 0.2650 -4.7471 17 7 1.4789 0.5667 -5.4289 18 6 4.0166 0.2386 -5.5969 19 6 3.7688 1.3951 -4.6261 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 0.7088 1.1615 3.4844 24 1 2.2490 -1.6317 -1.1525 25 1 3.6343 -1.1498 -3.3878 26 1 1.9584 -1.5298 -3.8517 27 1 1.1073 -0.2549 -5.8818 28 1 0.8074 0.9607 -4.7871 29 1 4.7854 -0.4863 -5.3298 30 1 3.9144 0.4452 -6.6623 31 1 3.5036 2.3624 -5.0529 32 1 4.3748 1.4303 -3.7208 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398130942.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:29 Heat of formation + Delta-G solvation = -24.543321 kcal Electronic energy + Delta-G solvation = -14208.967517 eV Core-core repulsion = 11783.757218 eV Total energy + Delta-G solvation = -2425.210298 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.31361 -37.23738 -34.69506 -32.39085 -30.95922 -29.87171 -27.76670 -25.26485 -22.27936 -21.54580 -19.66719 -19.12279 -17.08166 -15.85317 -15.75103 -15.23179 -14.97866 -14.51767 -13.99532 -13.78790 -12.91687 -12.51682 -12.31334 -12.03143 -11.58757 -11.27299 -11.10029 -10.95528 -10.73002 -10.41026 -10.33798 -10.24995 -9.76309 -9.07305 -8.97304 -8.67757 -8.55005 -7.90226 -6.13524 -4.23180 3.24114 3.29461 3.30469 3.40991 3.76243 4.25111 4.45146 4.48880 4.84594 5.14694 5.15440 5.19177 5.62927 5.68749 5.75363 5.88776 5.92063 6.19345 6.37717 6.80453 6.94170 7.13783 7.31572 7.45820 7.54783 7.56426 7.68370 7.90400 8.13992 8.67089 8.77357 9.14299 9.44782 10.92384 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.058860 B = 0.006691 C = 0.006434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.590722 B = 4183.459280 C = 4351.138746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.535 4.535 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.712 5.712 13 C 0.498 3.502 14 O -0.547 6.547 15 C -0.137 4.137 16 C 0.058 3.942 17 N -0.810 5.810 18 C -0.170 4.170 19 C -0.139 4.139 20 H 0.013 0.987 21 H 0.090 0.910 22 H 0.025 0.975 23 H 0.265 0.735 24 H 0.387 0.613 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.336 0.664 28 H 0.354 0.646 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.223 -4.650 -11.149 12.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.066 0.934 4 C -0.574 4.574 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.360 5.360 13 C 0.283 3.717 14 O -0.425 6.425 15 C -0.180 4.180 16 C -0.037 4.037 17 N -0.340 5.340 18 C -0.208 4.208 19 C -0.177 4.177 20 H 0.033 0.967 21 H 0.108 0.892 22 H 0.044 0.956 23 H 0.075 0.925 24 H 0.219 0.781 25 H 0.110 0.890 26 H 0.105 0.895 27 H 0.148 0.852 28 H 0.169 0.831 29 H 0.109 0.891 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.328 -3.145 -11.448 12.330 hybrid contribution -0.068 -1.732 1.630 2.379 sum 3.261 -4.877 -9.818 11.437 Atomic orbital electron populations 1.22071 0.98571 0.98976 1.00841 1.18711 0.90939 0.93976 0.80107 0.93425 1.21189 1.32526 1.13229 0.90422 0.92204 1.24894 0.94806 0.94950 0.99064 1.69894 1.35815 1.22396 1.24001 0.86505 0.79169 0.79575 0.81822 1.20176 1.21082 1.20174 1.46563 1.65261 1.13462 1.10703 1.20398 0.78943 0.87699 0.84691 1.90658 1.50913 1.15851 1.85117 1.21882 1.03202 0.98744 0.94169 1.20800 0.87919 0.99914 0.95040 1.58543 1.06184 1.34026 1.35260 1.23181 0.97590 1.02224 0.97814 1.22867 1.00568 0.94042 1.00231 0.96749 0.89180 0.95598 0.92501 0.78105 0.89038 0.89532 0.85167 0.83102 0.89053 0.88550 0.88481 0.88972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.26 37.16 0.34 -3.30 16 2 C 0.26 6.75 2.56 -69.09 -0.18 6.58 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.54 -14.25 8.73 -34.44 -0.30 -14.55 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.02 11.32 55.43 0.63 -24.40 16 8 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 N -0.71 -14.71 5.07 -54.94 -0.28 -14.99 16 13 C 0.50 9.68 7.69 -10.99 -0.08 9.60 16 14 O -0.55 -12.65 14.69 5.56 0.08 -12.57 16 15 C -0.14 -1.94 5.86 -27.88 -0.16 -2.10 16 16 C 0.06 0.81 2.02 -131.60 -0.27 0.54 16 17 N -0.81 -10.99 9.70 0.74 0.01 -10.98 16 18 C -0.17 -2.02 10.11 -26.73 -0.27 -2.29 16 19 C -0.14 -2.04 9.33 -26.73 -0.25 -2.28 16 20 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 21 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 22 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 24 H 0.39 6.93 8.54 -40.82 -0.35 6.58 16 25 H 0.09 1.14 7.95 -51.93 -0.41 0.72 16 26 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.34 3.74 9.08 -39.29 -0.36 3.38 16 28 H 0.35 5.38 8.64 -39.29 -0.34 5.04 16 29 H 0.09 0.94 8.08 -51.93 -0.42 0.52 16 30 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 LS Contribution 273.33 15.07 4.12 4.12 Total: -1.00 -30.02 273.33 -6.39 -36.41 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -4.66 Total: 12.90 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -1.26 Total: -6.13 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: 0.36 Total: -50.37 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.08 Total: -12.57 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.02 -6.39 -36.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398130942.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.864 kcal (2) G-P(sol) polarization free energy of solvation -30.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds