Wall clock time and date at job start Mon Mar 30 2020 02:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46921 * 2 1 4 4 C 1.50697 * 109.46641 * 119.99771 * 2 1 3 5 5 H 1.08001 * 119.99643 * 120.00372 * 4 2 1 6 6 C 1.37870 * 120.00496 * 299.99987 * 4 2 1 7 7 N 1.31519 * 119.99928 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00372 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47187 * 59.99850 * 8 6 4 10 10 H 1.48504 * 109.46953 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46725 * 299.99682 * 8 6 4 12 12 N 1.46496 * 109.47178 * 239.99986 * 2 1 3 13 13 C 1.34781 * 120.00180 * 85.00262 * 12 2 1 14 14 O 1.21271 * 119.99816 * 359.97438 * 13 12 2 15 15 C 1.50696 * 119.99894 * 180.02562 * 13 12 2 16 16 C 1.53002 * 109.46941 * 181.85736 * 15 13 12 17 17 N 1.46898 * 115.54887 * 280.05390 * 16 15 13 18 18 C 1.53000 * 117.49701 * 134.34998 * 16 15 13 19 19 C 1.52996 * 117.49819 * 65.72413 * 16 15 13 20 20 H 1.09006 * 109.46998 * 60.00345 * 1 2 3 21 21 H 1.09001 * 109.47605 * 300.00298 * 1 2 3 22 22 H 1.09001 * 109.47433 * 179.97438 * 1 2 3 23 23 H 0.96999 * 120.00044 * 179.97438 * 7 6 4 24 24 H 0.96996 * 119.99853 * 264.99935 * 12 2 1 25 25 H 1.09003 * 109.47273 * 301.85322 * 15 13 12 26 26 H 1.09002 * 109.47520 * 61.85641 * 15 13 12 27 27 H 1.00902 * 111.00034 * 295.78049 * 17 16 15 28 28 H 1.00902 * 110.99923 * 59.73493 * 17 16 15 29 29 H 1.08998 * 117.50004 * 359.97438 * 18 16 15 30 30 H 1.09002 * 117.49717 * 145.02175 * 18 16 15 31 31 H 1.09001 * 117.49521 * 214.97731 * 19 16 15 32 32 H 1.08997 * 117.49863 * 0.02562 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4827 7 7 0.9435 0.8303 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.8072 -1.1190 4.0079 10 1 1.8266 -0.4198 5.2205 11 1 1.8277 -2.5198 4.0082 12 7 2.0183 -0.6906 -1.1961 13 6 2.1471 -0.0182 -2.3571 14 8 1.8583 1.1583 -2.4117 15 6 2.6489 -0.7288 -3.5877 16 6 2.7446 0.2650 -4.7471 17 7 1.4789 0.5667 -5.4289 18 6 4.0166 0.2386 -5.5969 19 6 3.7688 1.3951 -4.6261 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 0.7088 1.1615 3.4844 24 1 2.2490 -1.6317 -1.1525 25 1 3.6343 -1.1498 -3.3878 26 1 1.9584 -1.5298 -3.8517 27 1 1.1073 -0.2549 -5.8818 28 1 0.8074 0.9607 -4.7871 29 1 4.7854 -0.4863 -5.3298 30 1 3.9144 0.4452 -6.6623 31 1 3.5036 2.3624 -5.0529 32 1 4.3748 1.4303 -3.7208 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398130942.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:29 Heat of formation + Delta-G solvation = -47.376129 kcal Electronic energy + Delta-G solvation = -14209.957622 eV Core-core repulsion = 11783.757218 eV Total energy + Delta-G solvation = -2426.200403 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.79482 -38.52207 -36.57011 -34.30926 -32.03545 -31.53768 -29.29066 -27.34889 -23.46772 -23.18701 -21.31580 -20.43336 -18.82923 -17.44340 -17.22809 -16.84664 -16.21465 -16.07724 -15.46505 -15.11910 -14.63128 -14.33054 -13.77386 -13.44996 -13.20940 -12.93883 -12.80500 -12.67870 -12.30852 -12.26844 -12.16080 -11.47757 -11.13338 -10.94856 -10.62974 -10.41526 -9.77459 -9.70780 -8.18709 -6.36781 1.43824 1.45933 1.53887 1.87932 2.33166 2.53454 3.07180 3.11996 3.46022 3.72419 4.01391 4.05422 4.39430 4.61228 4.73449 4.79875 4.81601 4.85371 4.90883 5.08841 5.10202 5.33561 5.43013 5.61046 5.69089 5.90941 6.09553 6.22649 6.57162 6.71871 7.00990 7.31841 7.61154 8.87301 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.058860 B = 0.006691 C = 0.006434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.590722 B = 4183.459280 C = 4351.138746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.271 3.729 3 H -0.004 1.004 4 C -0.549 4.549 5 H 0.073 0.927 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.973 3.027 9 H -0.271 1.271 10 H -0.286 1.286 11 H -0.263 1.263 12 N -0.710 5.710 13 C 0.493 3.507 14 O -0.589 6.589 15 C -0.123 4.123 16 C 0.042 3.958 17 N -0.812 5.812 18 C -0.133 4.133 19 C -0.167 4.167 20 H 0.012 0.988 21 H 0.064 0.936 22 H 0.039 0.961 23 H 0.265 0.735 24 H 0.404 0.596 25 H 0.117 0.883 26 H 0.116 0.884 27 H 0.351 0.649 28 H 0.342 0.658 29 H 0.116 0.884 30 H 0.107 0.893 31 H 0.084 0.916 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.232 -7.047 -11.940 14.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.167 3.833 3 H 0.013 0.987 4 C -0.587 4.587 5 H 0.091 0.909 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.797 3.203 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.188 1.188 12 N -0.359 5.359 13 C 0.281 3.719 14 O -0.470 6.470 15 C -0.165 4.165 16 C -0.052 4.052 17 N -0.342 5.342 18 C -0.171 4.171 19 C -0.205 4.205 20 H 0.031 0.969 21 H 0.083 0.917 22 H 0.058 0.942 23 H 0.074 0.926 24 H 0.238 0.762 25 H 0.135 0.865 26 H 0.134 0.866 27 H 0.165 0.835 28 H 0.155 0.845 29 H 0.134 0.866 30 H 0.126 0.874 31 H 0.102 0.898 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.353 -5.591 -12.281 14.178 hybrid contribution -0.385 -0.923 1.822 2.078 sum 3.969 -6.514 -10.459 12.945 Atomic orbital electron populations 1.21883 0.98431 0.99310 0.99471 1.18284 0.91012 0.91814 0.82192 0.98658 1.21543 1.32649 1.13594 0.90932 0.90896 1.25828 0.94863 0.95579 1.02420 1.70053 1.37011 1.23946 1.24676 0.85386 0.78642 0.78716 0.77521 1.19562 1.21186 1.18793 1.46329 1.65523 1.14165 1.09885 1.21380 0.77627 0.87336 0.85601 1.90645 1.52455 1.18066 1.85843 1.21864 1.04904 0.98764 0.90949 1.20962 0.88672 0.99603 0.95952 1.58521 1.05925 1.34928 1.34869 1.23252 0.96045 1.00122 0.97651 1.22823 1.01999 0.94611 1.01044 0.96921 0.91703 0.94183 0.92553 0.76170 0.86472 0.86627 0.83508 0.84452 0.86590 0.87420 0.89777 0.90457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.72 9.26 71.98 0.67 -6.06 16 2 C 0.27 14.07 2.56 44.25 0.11 14.18 16 3 H 0.00 -0.28 7.58 -2.39 -0.02 -0.30 16 4 C -0.55 -29.10 8.73 25.60 0.22 -28.88 16 5 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 6 C 0.01 0.70 5.30 84.65 0.45 1.15 16 7 N -0.92 -53.09 11.32 21.45 0.24 -52.85 16 8 Si 0.97 41.90 29.54 68.60 2.03 43.93 16 9 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 10 H -0.29 -12.27 7.11 99.48 0.71 -11.57 16 11 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 12 N -0.71 -28.82 5.07 -446.12 -2.26 -31.09 16 13 C 0.49 18.85 7.69 87.66 0.67 19.53 16 14 O -0.59 -27.90 14.69 -3.00 -0.04 -27.94 16 15 C -0.12 -3.12 5.86 29.85 0.17 -2.95 16 16 C 0.04 1.10 2.02 3.53 0.01 1.11 16 17 N -0.81 -20.80 9.70 -151.57 -1.47 -22.27 16 18 C -0.13 -2.73 10.11 30.60 0.31 -2.42 16 19 C -0.17 -4.76 9.33 30.60 0.29 -4.48 16 20 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 21 H 0.06 3.63 6.07 -2.39 -0.01 3.62 16 22 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 23 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 24 H 0.40 13.63 8.54 -92.71 -0.79 12.84 16 25 H 0.12 2.43 7.95 -2.39 -0.02 2.41 16 26 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.35 6.96 9.08 -89.69 -0.81 6.15 16 28 H 0.34 10.27 8.64 -89.69 -0.77 9.49 16 29 H 0.12 1.85 8.08 -2.39 -0.02 1.83 16 30 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -66.40 273.33 0.16 -66.25 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: -1.24 Total: 32.78 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: 2.90 Total: -8.81 kcal Atomic # 7 Polarization: -102.71 SS G_CDS: -3.49 Total: -106.20 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.04 Total: -27.94 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -66.40 0.16 -66.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398130942.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.873 kcal (2) G-P(sol) polarization free energy of solvation -66.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds