Wall clock time and date at job start Mon Mar 30 2020 02:24:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 H 1.08994 * 109.47214 * 2 1
4 4 C 1.50702 * 109.47029 * 120.00297 * 2 1 3
5 5 H 1.08007 * 119.99981 * 114.47702 * 4 2 1
6 6 C 1.37872 * 120.00181 * 294.48188 * 4 2 1
7 7 N 1.31508 * 120.00593 * 164.58765 * 6 4 2
8 8 Si 1.86797 * 119.99894 * 344.86064 * 6 4 2
9 9 H 1.48501 * 109.47054 * 269.72685 * 8 6 4
10 10 H 1.48506 * 109.47355 * 29.72399 * 8 6 4
11 11 H 1.48500 * 109.47516 * 149.72369 * 8 6 4
12 12 N 1.46503 * 109.46819 * 240.00052 * 2 1 3
13 13 C 1.34774 * 120.00000 * 85.00386 * 12 2 1
14 14 O 1.21281 * 119.99791 * 0.02562 * 13 12 2
15 15 C 1.50697 * 120.00282 * 179.97438 * 13 12 2
16 16 H 1.09003 * 109.46846 * 320.00486 * 15 13 12
17 17 N 1.46897 * 109.47285 * 199.99805 * 15 13 12
18 18 C 1.53000 * 109.47021 * 79.99586 * 15 13 12
19 19 C 1.52996 * 117.50239 * 248.74659 * 18 15 13
20 20 C 1.53003 * 117.49999 * 180.08750 * 18 15 13
21 21 H 1.08994 * 109.46889 * 173.54466 * 1 2 3
22 22 H 1.09000 * 109.46645 * 293.54588 * 1 2 3
23 23 H 1.08995 * 109.46571 * 53.54262 * 1 2 3
24 24 H 0.97011 * 119.99651 * 355.18597 * 7 6 4
25 25 H 0.97002 * 119.99993 * 264.99987 * 12 2 1
26 26 H 1.00899 * 110.99979 * 299.99762 * 17 15 13
27 27 H 1.00905 * 110.99667 * 63.95467 * 17 15 13
28 28 H 1.09000 * 115.55049 * 34.42172 * 18 15 13
29 29 H 1.09003 * 117.50001 * 0.02562 * 19 18 15
30 30 H 1.09006 * 117.50211 * 145.02079 * 19 18 15
31 31 H 1.08998 * 117.50335 * 214.98031 * 20 18 15
32 32 H 1.08999 * 117.49443 * 0.02562 * 20 18 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0324 -0.7105 1.2304
5 1 2.5778 -1.6377 1.1338
6 6 1.7957 -0.1769 2.4795
7 7 1.9545 -0.9199 3.5529
8 14 1.2420 1.5992 2.6468
9 1 2.4317 2.4785 2.7762
10 1 0.4655 1.9912 1.4431
11 1 0.3886 1.7402 3.8539
12 7 2.0183 -0.6906 -1.1962
13 6 2.1471 -0.0183 -2.3571
14 8 1.8592 1.1586 -2.4114
15 6 2.6499 -0.7284 -3.5875
16 1 3.4562 -1.4078 -3.3109
17 7 3.1509 0.2592 -4.5526
18 6 1.5066 -1.5248 -4.2196
19 6 1.5916 -3.0513 -4.1603
20 6 1.8180 -2.3228 -5.4874
21 1 -0.3633 -1.0211 -0.1155
22 1 -0.3632 0.4105 0.9421
23 1 -0.3632 0.6107 -0.8265
24 1 2.1700 -1.8616 3.4634
25 1 2.2490 -1.6318 -1.1527
26 1 2.4215 0.9009 -4.8249
27 1 3.9485 0.7542 -4.1824
28 1 0.5182 -1.0723 -4.1399
29 1 2.4618 -3.4883 -3.6705
30 1 0.6590 -3.6031 -4.0419
31 1 1.0344 -2.3957 -6.2415
32 1 2.8375 -2.2808 -5.8708
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000399154716.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:24:18
Heat of formation + Delta-G solvation = -24.170537 kcal
Electronic energy + Delta-G solvation = -14331.169500 eV
Core-core repulsion = 11905.975366 eV
Total energy + Delta-G solvation = -2425.194133 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 212.127 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-39.55186 -37.20096 -35.10030 -33.01536 -32.45941 -29.82833 -26.13344 -24.79080
-22.34663 -21.70214 -20.25413 -19.57289 -17.94493 -16.70171 -16.03120 -15.42120
-15.07720 -14.46263 -13.86898 -13.52687 -13.23642 -12.78228 -12.59632 -12.21741
-11.73543 -11.54075 -11.42649 -11.09518 -10.58302 -10.49348 -10.25208 -10.15618
-9.79051 -9.64668 -9.05605 -8.53960 -8.44336 -8.19331 -6.59527 -4.25121
3.11406 3.38374 3.42279 3.56921 3.73580 3.96261 4.41104 4.62482
4.77453 4.93303 5.06425 5.14994 5.35852 5.43277 5.59344 5.64972
5.87851 6.10688 6.19417 6.35669 6.50345 6.64365 6.91583 7.05032
7.25474 7.34714 7.46243 7.63339 8.20931 8.43509 8.66445 8.91946
9.43766 10.79558
Molecular weight = 212.13amu
Principal moments of inertia in cm(-1)
A = 0.045900 B = 0.008031 C = 0.007453
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 609.877398 B = 3485.510705 C = 3755.935594
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.239 3.761
3 H 0.041 0.959
4 C -0.617 4.617
5 H 0.062 0.938
6 C 0.040 3.960
7 N -0.899 5.899
8 Si 1.039 2.961
9 H -0.284 1.284
10 H -0.268 1.268
11 H -0.283 1.283
12 N -0.695 5.695
13 C 0.472 3.528
14 O -0.564 6.564
15 C 0.103 3.897
16 H 0.096 0.904
17 N -0.818 5.818
18 C -0.144 4.144
19 C -0.177 4.177
20 C -0.156 4.156
21 H 0.043 0.957
22 H 0.056 0.944
23 H 0.028 0.972
24 H 0.270 0.730
25 H 0.393 0.607
26 H 0.349 0.651
27 H 0.343 0.657
28 H 0.103 0.897
29 H 0.096 0.904
30 H 0.095 0.905
31 H 0.091 0.909
32 H 0.100 0.900
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.246 -2.322 -14.012 14.205
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C 0.135 3.865
3 H 0.059 0.941
4 C -0.655 4.655
5 H 0.080 0.920
6 C -0.166 4.166
7 N -0.532 5.532
8 Si 0.866 3.134
9 H -0.210 1.210
10 H -0.193 1.193
11 H -0.209 1.209
12 N -0.342 5.342
13 C 0.255 3.745
14 O -0.444 6.444
15 C -0.013 4.013
16 H 0.114 0.886
17 N -0.347 5.347
18 C -0.164 4.164
19 C -0.214 4.214
20 C -0.194 4.194
21 H 0.062 0.938
22 H 0.075 0.925
23 H 0.047 0.953
24 H 0.080 0.920
25 H 0.226 0.774
26 H 0.162 0.838
27 H 0.156 0.844
28 H 0.121 0.879
29 H 0.115 0.885
30 H 0.114 0.886
31 H 0.109 0.891
32 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges -0.669 -0.939 -13.375 13.424
hybrid contribution 0.216 -1.021 -0.176 1.059
sum -0.453 -1.960 -13.551 13.699
Atomic orbital electron populations
1.22425 0.98977 0.99829 0.99913 1.19068 0.90517 0.94207 0.82684
0.94134 1.22103 1.41154 1.11192 0.91066 0.92034 1.25681 0.93895
1.05438 0.91631 1.70828 1.43336 1.08313 1.30683 0.84178 0.77566
0.75342 0.76329 1.21049 1.19304 1.20895 1.46359 1.64145 1.13656
1.10039 1.21745 0.78784 0.88034 0.85938 1.90638 1.52057 1.16329
1.85403 1.21064 0.96571 0.94681 0.88940 0.88579 1.59154 1.12282
1.22219 1.40995 1.21975 0.98680 0.92965 1.02731 1.23046 1.03463
0.93450 1.01453 1.22816 1.03054 1.02867 0.90631 0.93790 0.92475
0.95305 0.92043 0.77355 0.83798 0.84438 0.87850 0.88550 0.88641
0.89100 0.88139
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.50 8.76 37.16 0.33 -3.17 16
2 C 0.24 5.80 2.11 -69.08 -0.15 5.65 16
3 H 0.04 1.07 6.21 -51.93 -0.32 0.75 16
4 C -0.62 -16.79 9.02 -34.44 -0.31 -17.10 16
5 H 0.06 1.74 7.96 -52.48 -0.42 1.33 16
6 C 0.04 1.13 5.33 -17.82 -0.09 1.04 16
7 N -0.90 -26.84 13.70 55.43 0.76 -26.08 16
8 Si 1.04 25.18 26.17 -169.99 -4.45 20.73 16
9 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16
10 H -0.27 -6.17 5.53 56.52 0.31 -5.86 16
11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
12 N -0.69 -14.10 5.07 -54.93 -0.28 -14.38 16
13 C 0.47 8.94 7.01 -10.99 -0.08 8.86 16
14 O -0.56 -12.60 15.91 5.56 0.09 -12.51 16
15 C 0.10 1.47 3.34 -68.87 -0.23 1.24 16
16 H 0.10 1.27 7.90 -51.93 -0.41 0.85 16
17 N -0.82 -10.81 8.87 -5.66 -0.05 -10.86 16
18 C -0.14 -1.84 5.31 -90.62 -0.48 -2.32 16
19 C -0.18 -1.91 10.18 -26.70 -0.27 -2.18 16
20 C -0.16 -1.65 10.13 -26.69 -0.27 -1.92 16
21 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16
22 H 0.06 1.32 5.06 -51.93 -0.26 1.06 16
23 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16
24 H 0.27 7.95 8.73 -40.82 -0.36 7.60 16
25 H 0.39 7.18 8.53 -40.82 -0.35 6.83 16
26 H 0.35 4.78 8.58 -39.29 -0.34 4.44 16
27 H 0.34 4.41 9.06 -39.29 -0.36 4.05 16
28 H 0.10 1.44 8.11 -51.93 -0.42 1.02 16
29 H 0.10 0.98 8.05 -51.93 -0.42 0.56 16
30 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16
31 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16
32 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16
LS Contribution 269.55 15.07 4.06 4.06
Total: -1.00 -30.62 269.55 -6.07 -36.69
By element:
Atomic # 1 Polarization: 16.90 SS G_CDS: -4.65 Total: 12.25 kcal
Atomic # 6 Polarization: -8.35 SS G_CDS: -1.56 Total: -9.91 kcal
Atomic # 7 Polarization: -51.75 SS G_CDS: 0.43 Total: -51.32 kcal
Atomic # 8 Polarization: -12.60 SS G_CDS: 0.09 Total: -12.51 kcal
Atomic # 14 Polarization: 25.18 SS G_CDS: -4.45 Total: 20.73 kcal
Total LS contribution 4.06 Total: 4.06 kcal
Total: -30.62 -6.07 -36.69 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000399154716.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 12.523 kcal
(2) G-P(sol) polarization free energy of solvation -30.622 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.099 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.072 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.694 kcal
(6) G-S(sol) free energy of system = (1) + (5) -24.171 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds