Wall clock time and date at job start Mon Mar 30 2020 02:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.47214 * 2 1 4 4 C 1.50702 * 109.47029 * 120.00297 * 2 1 3 5 5 H 1.08007 * 119.99981 * 114.47702 * 4 2 1 6 6 C 1.37872 * 120.00181 * 294.48188 * 4 2 1 7 7 N 1.31508 * 120.00593 * 164.58765 * 6 4 2 8 8 Si 1.86797 * 119.99894 * 344.86064 * 6 4 2 9 9 H 1.48501 * 109.47054 * 269.72685 * 8 6 4 10 10 H 1.48506 * 109.47355 * 29.72399 * 8 6 4 11 11 H 1.48500 * 109.47516 * 149.72369 * 8 6 4 12 12 N 1.46503 * 109.46819 * 240.00052 * 2 1 3 13 13 C 1.34774 * 120.00000 * 85.00386 * 12 2 1 14 14 O 1.21281 * 119.99791 * 0.02562 * 13 12 2 15 15 C 1.50697 * 120.00282 * 179.97438 * 13 12 2 16 16 H 1.09003 * 109.46846 * 320.00486 * 15 13 12 17 17 N 1.46897 * 109.47285 * 199.99805 * 15 13 12 18 18 C 1.53000 * 109.47021 * 79.99586 * 15 13 12 19 19 C 1.52996 * 117.50239 * 248.74659 * 18 15 13 20 20 C 1.53003 * 117.49999 * 180.08750 * 18 15 13 21 21 H 1.08994 * 109.46889 * 173.54466 * 1 2 3 22 22 H 1.09000 * 109.46645 * 293.54588 * 1 2 3 23 23 H 1.08995 * 109.46571 * 53.54262 * 1 2 3 24 24 H 0.97011 * 119.99651 * 355.18597 * 7 6 4 25 25 H 0.97002 * 119.99993 * 264.99987 * 12 2 1 26 26 H 1.00899 * 110.99979 * 299.99762 * 17 15 13 27 27 H 1.00905 * 110.99667 * 63.95467 * 17 15 13 28 28 H 1.09000 * 115.55049 * 34.42172 * 18 15 13 29 29 H 1.09003 * 117.50001 * 0.02562 * 19 18 15 30 30 H 1.09006 * 117.50211 * 145.02079 * 19 18 15 31 31 H 1.08998 * 117.50335 * 214.98031 * 20 18 15 32 32 H 1.08999 * 117.49443 * 0.02562 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.5778 -1.6377 1.1338 6 6 1.7957 -0.1769 2.4795 7 7 1.9545 -0.9199 3.5529 8 14 1.2420 1.5992 2.6468 9 1 2.4317 2.4785 2.7762 10 1 0.4655 1.9912 1.4431 11 1 0.3886 1.7402 3.8539 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0183 -2.3571 14 8 1.8592 1.1586 -2.4114 15 6 2.6499 -0.7284 -3.5875 16 1 3.4562 -1.4078 -3.3109 17 7 3.1509 0.2592 -4.5526 18 6 1.5066 -1.5248 -4.2196 19 6 1.5916 -3.0513 -4.1603 20 6 1.8180 -2.3228 -5.4874 21 1 -0.3633 -1.0211 -0.1155 22 1 -0.3632 0.4105 0.9421 23 1 -0.3632 0.6107 -0.8265 24 1 2.1700 -1.8616 3.4634 25 1 2.2490 -1.6318 -1.1527 26 1 2.4215 0.9009 -4.8249 27 1 3.9485 0.7542 -4.1824 28 1 0.5182 -1.0723 -4.1399 29 1 2.4618 -3.4883 -3.6705 30 1 0.6590 -3.6031 -4.0419 31 1 1.0344 -2.3957 -6.2415 32 1 2.8375 -2.2808 -5.8708 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399154716.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:18 Heat of formation + Delta-G solvation = -24.170537 kcal Electronic energy + Delta-G solvation = -14331.169500 eV Core-core repulsion = 11905.975366 eV Total energy + Delta-G solvation = -2425.194133 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.55186 -37.20096 -35.10030 -33.01536 -32.45941 -29.82833 -26.13344 -24.79080 -22.34663 -21.70214 -20.25413 -19.57289 -17.94493 -16.70171 -16.03120 -15.42120 -15.07720 -14.46263 -13.86898 -13.52687 -13.23642 -12.78228 -12.59632 -12.21741 -11.73543 -11.54075 -11.42649 -11.09518 -10.58302 -10.49348 -10.25208 -10.15618 -9.79051 -9.64668 -9.05605 -8.53960 -8.44336 -8.19331 -6.59527 -4.25121 3.11406 3.38374 3.42279 3.56921 3.73580 3.96261 4.41104 4.62482 4.77453 4.93303 5.06425 5.14994 5.35852 5.43277 5.59344 5.64972 5.87851 6.10688 6.19417 6.35669 6.50345 6.64365 6.91583 7.05032 7.25474 7.34714 7.46243 7.63339 8.20931 8.43509 8.66445 8.91946 9.43766 10.79558 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.045900 B = 0.008031 C = 0.007453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.877398 B = 3485.510705 C = 3755.935594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.239 3.761 3 H 0.041 0.959 4 C -0.617 4.617 5 H 0.062 0.938 6 C 0.040 3.960 7 N -0.899 5.899 8 Si 1.039 2.961 9 H -0.284 1.284 10 H -0.268 1.268 11 H -0.283 1.283 12 N -0.695 5.695 13 C 0.472 3.528 14 O -0.564 6.564 15 C 0.103 3.897 16 H 0.096 0.904 17 N -0.818 5.818 18 C -0.144 4.144 19 C -0.177 4.177 20 C -0.156 4.156 21 H 0.043 0.957 22 H 0.056 0.944 23 H 0.028 0.972 24 H 0.270 0.730 25 H 0.393 0.607 26 H 0.349 0.651 27 H 0.343 0.657 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.246 -2.322 -14.012 14.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.135 3.865 3 H 0.059 0.941 4 C -0.655 4.655 5 H 0.080 0.920 6 C -0.166 4.166 7 N -0.532 5.532 8 Si 0.866 3.134 9 H -0.210 1.210 10 H -0.193 1.193 11 H -0.209 1.209 12 N -0.342 5.342 13 C 0.255 3.745 14 O -0.444 6.444 15 C -0.013 4.013 16 H 0.114 0.886 17 N -0.347 5.347 18 C -0.164 4.164 19 C -0.214 4.214 20 C -0.194 4.194 21 H 0.062 0.938 22 H 0.075 0.925 23 H 0.047 0.953 24 H 0.080 0.920 25 H 0.226 0.774 26 H 0.162 0.838 27 H 0.156 0.844 28 H 0.121 0.879 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.109 0.891 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.669 -0.939 -13.375 13.424 hybrid contribution 0.216 -1.021 -0.176 1.059 sum -0.453 -1.960 -13.551 13.699 Atomic orbital electron populations 1.22425 0.98977 0.99829 0.99913 1.19068 0.90517 0.94207 0.82684 0.94134 1.22103 1.41154 1.11192 0.91066 0.92034 1.25681 0.93895 1.05438 0.91631 1.70828 1.43336 1.08313 1.30683 0.84178 0.77566 0.75342 0.76329 1.21049 1.19304 1.20895 1.46359 1.64145 1.13656 1.10039 1.21745 0.78784 0.88034 0.85938 1.90638 1.52057 1.16329 1.85403 1.21064 0.96571 0.94681 0.88940 0.88579 1.59154 1.12282 1.22219 1.40995 1.21975 0.98680 0.92965 1.02731 1.23046 1.03463 0.93450 1.01453 1.22816 1.03054 1.02867 0.90631 0.93790 0.92475 0.95305 0.92043 0.77355 0.83798 0.84438 0.87850 0.88550 0.88641 0.89100 0.88139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 8.76 37.16 0.33 -3.17 16 2 C 0.24 5.80 2.11 -69.08 -0.15 5.65 16 3 H 0.04 1.07 6.21 -51.93 -0.32 0.75 16 4 C -0.62 -16.79 9.02 -34.44 -0.31 -17.10 16 5 H 0.06 1.74 7.96 -52.48 -0.42 1.33 16 6 C 0.04 1.13 5.33 -17.82 -0.09 1.04 16 7 N -0.90 -26.84 13.70 55.43 0.76 -26.08 16 8 Si 1.04 25.18 26.17 -169.99 -4.45 20.73 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 10 H -0.27 -6.17 5.53 56.52 0.31 -5.86 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 N -0.69 -14.10 5.07 -54.93 -0.28 -14.38 16 13 C 0.47 8.94 7.01 -10.99 -0.08 8.86 16 14 O -0.56 -12.60 15.91 5.56 0.09 -12.51 16 15 C 0.10 1.47 3.34 -68.87 -0.23 1.24 16 16 H 0.10 1.27 7.90 -51.93 -0.41 0.85 16 17 N -0.82 -10.81 8.87 -5.66 -0.05 -10.86 16 18 C -0.14 -1.84 5.31 -90.62 -0.48 -2.32 16 19 C -0.18 -1.91 10.18 -26.70 -0.27 -2.18 16 20 C -0.16 -1.65 10.13 -26.69 -0.27 -1.92 16 21 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 22 H 0.06 1.32 5.06 -51.93 -0.26 1.06 16 23 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.27 7.95 8.73 -40.82 -0.36 7.60 16 25 H 0.39 7.18 8.53 -40.82 -0.35 6.83 16 26 H 0.35 4.78 8.58 -39.29 -0.34 4.44 16 27 H 0.34 4.41 9.06 -39.29 -0.36 4.05 16 28 H 0.10 1.44 8.11 -51.93 -0.42 1.02 16 29 H 0.10 0.98 8.05 -51.93 -0.42 0.56 16 30 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 269.55 15.07 4.06 4.06 Total: -1.00 -30.62 269.55 -6.07 -36.69 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -4.65 Total: 12.25 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -1.56 Total: -9.91 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: 0.43 Total: -51.32 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.09 Total: -12.51 kcal Atomic # 14 Polarization: 25.18 SS G_CDS: -4.45 Total: 20.73 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.62 -6.07 -36.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399154716.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.523 kcal (2) G-P(sol) polarization free energy of solvation -30.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds