Wall clock time and date at job start Mon Mar 30 2020 02:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47507 * 2 1 4 4 C 1.50703 * 109.46760 * 120.00200 * 2 1 3 5 5 H 1.08006 * 120.00033 * 120.00140 * 4 2 1 6 6 C 1.37878 * 120.00279 * 299.99733 * 4 2 1 7 7 N 1.31517 * 119.99526 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00414 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47336 * 89.99604 * 8 6 4 10 10 H 1.48496 * 109.46948 * 209.99986 * 8 6 4 11 11 H 1.48509 * 109.46746 * 329.99789 * 8 6 4 12 12 N 1.46500 * 109.47078 * 239.99882 * 2 1 3 13 13 C 1.34772 * 120.00265 * 85.00371 * 12 2 1 14 14 O 1.21287 * 119.99711 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00370 * 179.97438 * 13 12 2 16 16 H 1.09002 * 109.46959 * 39.99927 * 15 13 12 17 17 N 1.46901 * 109.47121 * 160.00169 * 15 13 12 18 18 C 1.53000 * 109.47083 * 279.99712 * 15 13 12 19 19 C 1.52995 * 117.50099 * 248.74519 * 18 15 13 20 20 C 1.53004 * 117.50029 * 180.08511 * 18 15 13 21 21 H 1.08999 * 109.46729 * 59.99981 * 1 2 3 22 22 H 1.08996 * 109.47226 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46811 * 299.99919 * 1 2 3 24 24 H 0.97002 * 120.00026 * 180.02562 * 7 6 4 25 25 H 0.97003 * 120.00197 * 265.00018 * 12 2 1 26 26 H 1.00901 * 110.99547 * 296.04468 * 17 15 13 27 27 H 1.00898 * 111.00245 * 59.99841 * 17 15 13 28 28 H 1.09003 * 115.54875 * 34.42294 * 18 15 13 29 29 H 1.08997 * 117.49775 * 0.02562 * 19 18 15 30 30 H 1.09000 * 117.49863 * 145.02467 * 19 18 15 31 31 H 1.08993 * 117.49963 * 214.98702 * 20 18 15 32 32 H 1.08999 * 117.49372 * 359.97438 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2395 2.4828 7 7 0.9427 0.8296 2.6034 8 14 2.3223 -1.1197 4.0080 9 1 3.6303 -0.5443 4.4119 10 1 1.3442 -0.9490 5.1122 11 1 2.4877 -2.5656 3.7122 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0184 -2.3571 14 8 1.8592 1.1586 -2.4115 15 6 2.6500 -0.7286 -3.5874 16 1 2.2157 -1.7273 -3.6334 17 7 2.2614 0.0299 -4.7839 18 6 4.1749 -0.8378 -3.5258 19 6 4.9834 -0.0123 -4.5285 20 6 4.8813 -1.5307 -4.6928 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.7087 1.1612 3.4844 25 1 2.2490 -1.6318 -1.1526 26 1 1.2577 0.0610 -4.8821 27 1 2.6519 0.9601 -4.7650 28 1 4.5965 -0.9740 -2.5299 29 1 4.4290 0.6090 -5.2319 30 1 5.9372 0.3944 -4.1925 31 1 5.7678 -2.1223 -4.4648 32 1 4.2596 -1.9091 -5.5042 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399154720.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:25 Heat of formation + Delta-G solvation = -21.266619 kcal Electronic energy + Delta-G solvation = -14261.718129 eV Core-core repulsion = 11836.649919 eV Total energy + Delta-G solvation = -2425.068210 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.44442 -37.14718 -34.86181 -32.65148 -32.38280 -29.17906 -26.17203 -25.26556 -22.28523 -21.70759 -20.09678 -19.25042 -17.36688 -16.55885 -15.79690 -15.47401 -14.79141 -14.21185 -13.92147 -13.77035 -13.04903 -12.53762 -12.39806 -11.75107 -11.31444 -11.23907 -11.09165 -10.98056 -10.78657 -10.39160 -10.31113 -10.25828 -10.04357 -9.60211 -9.08458 -8.59002 -8.39375 -7.94320 -6.14480 -4.24092 3.22794 3.27043 3.29781 3.31926 3.86872 4.15660 4.37721 4.65216 4.91097 5.08472 5.13194 5.17730 5.49690 5.65392 5.72227 5.77367 5.97886 6.27833 6.32232 6.78685 6.92392 7.11066 7.13290 7.42787 7.48764 7.53819 7.66962 7.88508 8.12398 8.63619 8.74940 9.08227 9.43619 10.91479 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.043396 B = 0.007503 C = 0.006767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.063072 B = 3730.948149 C = 4136.440254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.262 3.738 3 H 0.047 0.953 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.704 5.704 13 C 0.472 3.528 14 O -0.561 6.561 15 C 0.101 3.899 16 H 0.099 0.901 17 N -0.822 5.822 18 C -0.149 4.149 19 C -0.170 4.170 20 C -0.165 4.165 21 H 0.013 0.987 22 H 0.026 0.974 23 H 0.090 0.910 24 H 0.264 0.736 25 H 0.389 0.611 26 H 0.342 0.658 27 H 0.349 0.651 28 H 0.110 0.890 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.436 -4.927 -10.491 12.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.160 3.840 3 H 0.065 0.935 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.352 5.352 13 C 0.255 3.745 14 O -0.441 6.441 15 C -0.014 4.014 16 H 0.117 0.883 17 N -0.352 5.352 18 C -0.168 4.168 19 C -0.207 4.207 20 C -0.202 4.202 21 H 0.032 0.968 22 H 0.045 0.955 23 H 0.109 0.891 24 H 0.074 0.926 25 H 0.221 0.779 26 H 0.155 0.845 27 H 0.164 0.836 28 H 0.128 0.872 29 H 0.122 0.878 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.522 -4.515 -10.765 12.519 hybrid contribution -0.120 -0.249 1.729 1.751 sum 4.401 -4.764 -9.036 11.123 Atomic orbital electron populations 1.22069 0.98507 0.99077 1.00820 1.18744 0.91004 0.93973 0.80260 0.93529 1.21228 1.32449 1.13233 0.90356 0.92059 1.24901 0.94777 0.94966 0.99100 1.69905 1.35834 1.22511 1.23901 0.86442 0.78622 0.79851 0.82160 1.20541 1.21028 1.19813 1.46605 1.64288 1.13589 1.10669 1.21630 0.78802 0.88080 0.85998 1.90644 1.52101 1.16135 1.85223 1.20992 0.94526 0.98202 0.87706 0.88290 1.59301 1.16579 1.22373 1.36947 1.22149 0.91796 1.06950 0.95887 1.22907 1.00974 0.94279 1.02563 1.22881 1.02015 0.95106 1.00197 0.96833 0.95460 0.89139 0.92559 0.77851 0.84514 0.83630 0.87205 0.87760 0.89389 0.89299 0.88321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.26 37.16 0.34 -3.33 16 2 C 0.26 6.73 2.56 -69.08 -0.18 6.56 16 3 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 4 C -0.53 -14.24 8.73 -34.44 -0.30 -14.54 16 5 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -25.09 11.32 55.43 0.63 -24.46 16 8 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 12 N -0.70 -14.66 5.07 -54.93 -0.28 -14.94 16 13 C 0.47 9.31 7.01 -10.99 -0.08 9.23 16 14 O -0.56 -13.28 15.91 5.55 0.09 -13.19 16 15 C 0.10 1.49 3.51 -68.86 -0.24 1.25 16 16 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 17 N -0.82 -11.09 8.02 -5.65 -0.05 -11.13 16 18 C -0.15 -2.02 5.69 -90.62 -0.52 -2.54 16 19 C -0.17 -2.09 9.70 -26.70 -0.26 -2.35 16 20 C -0.16 -1.85 10.18 -26.69 -0.27 -2.13 16 21 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 22 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 24 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.39 7.04 8.54 -40.82 -0.35 6.69 16 26 H 0.34 4.47 9.06 -39.29 -0.36 4.12 16 27 H 0.35 4.96 7.09 -39.29 -0.28 4.68 16 28 H 0.11 1.58 8.11 -51.93 -0.42 1.16 16 29 H 0.10 1.27 6.26 -51.93 -0.33 0.95 16 30 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 270.72 15.07 4.08 4.08 Total: -1.00 -29.90 270.72 -6.66 -36.56 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -4.52 Total: 13.57 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -1.59 Total: -6.16 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: 0.30 Total: -50.53 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.09 Total: -13.19 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.90 -6.66 -36.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399154720.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.291 kcal (2) G-P(sol) polarization free energy of solvation -29.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds