Wall clock time and date at job start Mon Mar 30 2020 02:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47507 * 2 1 4 4 C 1.50703 * 109.46760 * 120.00200 * 2 1 3 5 5 H 1.08006 * 120.00033 * 120.00140 * 4 2 1 6 6 C 1.37878 * 120.00279 * 299.99733 * 4 2 1 7 7 N 1.31517 * 119.99526 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00414 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47336 * 89.99604 * 8 6 4 10 10 H 1.48496 * 109.46948 * 209.99986 * 8 6 4 11 11 H 1.48509 * 109.46746 * 329.99789 * 8 6 4 12 12 N 1.46500 * 109.47078 * 239.99882 * 2 1 3 13 13 C 1.34772 * 120.00265 * 85.00371 * 12 2 1 14 14 O 1.21287 * 119.99711 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00370 * 179.97438 * 13 12 2 16 16 H 1.09002 * 109.46959 * 39.99927 * 15 13 12 17 17 N 1.46901 * 109.47121 * 160.00169 * 15 13 12 18 18 C 1.53000 * 109.47083 * 279.99712 * 15 13 12 19 19 C 1.52995 * 117.50099 * 248.74519 * 18 15 13 20 20 C 1.53004 * 117.50029 * 180.08511 * 18 15 13 21 21 H 1.08999 * 109.46729 * 59.99981 * 1 2 3 22 22 H 1.08996 * 109.47226 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46811 * 299.99919 * 1 2 3 24 24 H 0.97002 * 120.00026 * 180.02562 * 7 6 4 25 25 H 0.97003 * 120.00197 * 265.00018 * 12 2 1 26 26 H 1.00901 * 110.99547 * 296.04468 * 17 15 13 27 27 H 1.00898 * 111.00245 * 59.99841 * 17 15 13 28 28 H 1.09003 * 115.54875 * 34.42294 * 18 15 13 29 29 H 1.08997 * 117.49775 * 0.02562 * 19 18 15 30 30 H 1.09000 * 117.49863 * 145.02467 * 19 18 15 31 31 H 1.08993 * 117.49963 * 214.98702 * 20 18 15 32 32 H 1.08999 * 117.49372 * 359.97438 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2395 2.4828 7 7 0.9427 0.8296 2.6034 8 14 2.3223 -1.1197 4.0080 9 1 3.6303 -0.5443 4.4119 10 1 1.3442 -0.9490 5.1122 11 1 2.4877 -2.5656 3.7122 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0184 -2.3571 14 8 1.8592 1.1586 -2.4115 15 6 2.6500 -0.7286 -3.5874 16 1 2.2157 -1.7273 -3.6334 17 7 2.2614 0.0299 -4.7839 18 6 4.1749 -0.8378 -3.5258 19 6 4.9834 -0.0123 -4.5285 20 6 4.8813 -1.5307 -4.6928 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.7087 1.1612 3.4844 25 1 2.2490 -1.6318 -1.1526 26 1 1.2577 0.0610 -4.8821 27 1 2.6519 0.9601 -4.7650 28 1 4.5965 -0.9740 -2.5299 29 1 4.4290 0.6090 -5.2319 30 1 5.9372 0.3944 -4.1925 31 1 5.7678 -2.1223 -4.4648 32 1 4.2596 -1.9091 -5.5042 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399154720.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:24 Heat of formation + Delta-G solvation = -43.438631 kcal Electronic energy + Delta-G solvation = -14262.679580 eV Core-core repulsion = 11836.649919 eV Total energy + Delta-G solvation = -2426.029661 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.96221 -38.38544 -36.74466 -34.34819 -33.80800 -31.06973 -27.54583 -27.29727 -23.43698 -23.15389 -21.68811 -20.73831 -19.03707 -17.70268 -17.59955 -17.23173 -16.38868 -15.54643 -15.39679 -15.18429 -14.71145 -14.37529 -13.77268 -13.60744 -13.01431 -12.92890 -12.80084 -12.35336 -12.27935 -12.15952 -12.15090 -11.52267 -11.17510 -11.14487 -10.83166 -10.63494 -9.79691 -9.74769 -8.20400 -6.38593 1.43150 1.43571 1.54550 1.72219 2.33415 2.58766 3.00241 3.09872 3.48986 3.81163 3.99915 4.09730 4.29250 4.49583 4.61920 4.71280 4.86689 4.89186 5.04250 5.05800 5.30644 5.39167 5.40995 5.57839 5.64702 5.85026 5.98383 6.06653 6.35788 6.69664 6.92468 7.29074 7.50642 8.85825 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.043396 B = 0.007503 C = 0.006767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.063072 B = 3730.948149 C = 4136.440254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.268 3.732 3 H -0.006 1.006 4 C -0.548 4.548 5 H 0.074 0.926 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.973 3.027 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.259 1.259 12 N -0.701 5.701 13 C 0.468 3.532 14 O -0.605 6.605 15 C 0.117 3.883 16 H 0.123 0.877 17 N -0.809 5.809 18 C -0.171 4.171 19 C -0.176 4.176 20 C -0.137 4.137 21 H 0.010 0.990 22 H 0.041 0.959 23 H 0.066 0.934 24 H 0.266 0.734 25 H 0.405 0.595 26 H 0.346 0.654 27 H 0.346 0.654 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.429 -6.971 -11.139 14.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.165 3.835 3 H 0.012 0.988 4 C -0.586 4.586 5 H 0.092 0.908 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.797 3.203 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.182 1.182 12 N -0.349 5.349 13 C 0.253 3.747 14 O -0.487 6.487 15 C 0.002 3.998 16 H 0.140 0.860 17 N -0.338 5.338 18 C -0.190 4.190 19 C -0.213 4.213 20 C -0.174 4.174 21 H 0.030 0.970 22 H 0.060 0.940 23 H 0.084 0.916 24 H 0.075 0.925 25 H 0.240 0.760 26 H 0.159 0.841 27 H 0.160 0.840 28 H 0.117 0.883 29 H 0.122 0.878 30 H 0.111 0.889 31 H 0.125 0.875 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.526 -6.598 -11.451 14.324 hybrid contribution -0.426 0.442 1.873 1.971 sum 5.100 -6.156 -9.578 12.475 Atomic orbital electron populations 1.21888 0.98319 0.99477 0.99474 1.18333 0.91114 0.91787 0.82308 0.98783 1.21566 1.32614 1.13603 0.90840 0.90807 1.25832 0.94816 0.95592 1.02432 1.70057 1.36979 1.24025 1.24659 0.85330 0.77783 0.79236 0.77921 1.20347 1.20867 1.18247 1.46379 1.64419 1.14249 1.09842 1.22703 0.77384 0.87671 0.86892 1.90620 1.53762 1.18351 1.86011 1.20998 0.95461 0.98467 0.84924 0.85969 1.59350 1.16876 1.22095 1.35503 1.22102 0.90909 1.09598 0.96391 1.23005 1.00934 0.95407 1.01997 1.22947 1.01842 0.94297 0.98329 0.97047 0.93973 0.91560 0.92518 0.76005 0.84117 0.84014 0.88282 0.87819 0.88866 0.87522 0.87556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.80 9.26 71.98 0.67 -6.14 16 2 C 0.27 14.07 2.56 44.25 0.11 14.19 16 3 H -0.01 -0.36 7.58 -2.39 -0.02 -0.38 16 4 C -0.55 -29.19 8.73 25.60 0.22 -28.97 16 5 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 6 C 0.01 0.72 5.30 84.65 0.45 1.16 16 7 N -0.92 -53.16 11.32 21.45 0.24 -52.91 16 8 Si 0.97 42.02 29.54 68.60 2.03 44.04 16 9 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 10 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 11 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 12 N -0.70 -29.02 5.07 -446.09 -2.26 -31.28 16 13 C 0.47 18.39 7.01 87.66 0.61 19.01 16 14 O -0.60 -29.25 15.91 -3.05 -0.05 -29.30 16 15 C 0.12 3.24 3.51 44.17 0.15 3.40 16 16 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 17 N -0.81 -20.46 8.02 -171.80 -1.38 -21.84 16 18 C -0.17 -4.32 5.69 -10.79 -0.06 -4.38 16 19 C -0.18 -3.97 9.70 30.62 0.30 -3.67 16 20 C -0.14 -2.63 10.18 30.62 0.31 -2.32 16 21 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 22 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 23 H 0.07 3.72 6.07 -2.39 -0.01 3.71 16 24 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 25 H 0.40 14.13 8.54 -92.71 -0.79 13.34 16 26 H 0.35 8.50 9.06 -89.69 -0.81 7.68 16 27 H 0.35 9.47 7.09 -89.70 -0.64 8.84 16 28 H 0.10 2.73 8.11 -2.39 -0.02 2.71 16 29 H 0.10 2.35 6.26 -2.39 -0.01 2.33 16 30 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.11 1.92 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -65.09 270.72 0.25 -64.83 By element: Atomic # 1 Polarization: 35.27 SS G_CDS: -1.10 Total: 34.18 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: 2.77 Total: -7.72 kcal Atomic # 7 Polarization: -102.64 SS G_CDS: -3.40 Total: -106.04 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -0.05 Total: -29.30 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal Total: -65.09 0.25 -64.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399154720.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.395 kcal (2) G-P(sol) polarization free energy of solvation -65.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds