Wall clock time and date at job start Mon Mar 30 2020 02:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46497 * 119.99915 * 2 1 4 4 C 1.50698 * 109.47014 * 270.00069 * 3 2 1 5 5 H 1.08001 * 120.00383 * 359.97438 * 4 3 2 6 6 C 1.37885 * 119.99851 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99755 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99932 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47024 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47143 * 119.99996 * 8 6 4 11 11 H 1.48503 * 109.46640 * 239.99837 * 8 6 4 12 12 C 1.34778 * 120.00054 * 180.02562 * 2 1 3 13 13 O 1.21281 * 120.00111 * 180.02562 * 12 2 1 14 14 C 1.50698 * 119.99962 * 359.97438 * 12 2 1 15 15 H 1.09005 * 109.47412 * 39.99802 * 14 12 2 16 16 N 1.46901 * 109.47352 * 160.00025 * 14 12 2 17 17 C 1.53003 * 109.47204 * 280.00160 * 14 12 2 18 18 C 1.53001 * 117.51964 * 111.28411 * 17 14 12 19 19 C 1.52999 * 60.00190 * 107.47982 * 18 17 14 20 20 H 1.09000 * 109.46963 * 269.99573 * 1 2 3 21 21 H 1.09001 * 109.47394 * 30.00126 * 1 2 3 22 22 H 1.08997 * 109.46890 * 149.99903 * 1 2 3 23 23 H 1.09004 * 109.47212 * 29.99670 * 3 2 1 24 24 H 1.08994 * 109.47137 * 149.99826 * 3 2 1 25 25 H 0.97003 * 119.99769 * 179.97438 * 7 6 4 26 26 H 1.00898 * 110.99992 * 59.99682 * 16 14 12 27 27 H 1.00897 * 111.00264 * 183.95228 * 16 14 12 28 28 H 1.09002 * 115.54973 * 325.58194 * 17 14 12 29 29 H 1.09001 * 117.49733 * 214.97413 * 18 17 14 30 30 H 1.08995 * 117.49577 * 359.97438 * 18 17 14 31 31 H 1.09004 * 117.50150 * 252.51496 * 19 18 17 32 32 H 1.09004 * 117.49681 * 107.48417 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1269 2.8775 -1.6727 7 7 3.5542 3.6176 -0.6731 8 14 3.4376 3.4171 -3.4339 9 1 2.8596 2.4171 -4.3673 10 1 2.8005 4.7382 -3.6666 11 1 4.9001 3.5247 -3.6679 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3854 -2.4723 -0.0005 15 1 0.5217 -2.3932 -0.6607 16 7 2.2675 -3.5470 -0.4748 17 6 0.9140 -2.7890 1.4202 18 6 -0.5898 -2.7292 1.6959 19 6 0.1227 -4.0816 1.6302 20 1 -0.3633 -0.0001 1.0277 21 1 -0.3634 0.8900 -0.5138 22 1 -0.3633 -0.8900 -0.5138 23 1 1.6084 2.0284 0.5138 24 1 3.1499 1.1384 0.5138 25 1 4.0317 4.4431 -0.8503 26 1 3.0763 -3.6404 0.1211 27 1 1.7675 -4.4206 -0.5453 28 1 1.5851 -2.4743 2.2193 29 1 -0.9079 -2.3749 2.6764 30 1 -1.2435 -2.4636 0.8651 31 1 -0.0624 -4.7061 0.7562 32 1 0.2732 -4.6171 2.5676 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399216301.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:56 Heat of formation + Delta-G solvation = -8.800429 kcal Electronic energy + Delta-G solvation = -14420.600170 eV Core-core repulsion = 11996.072535 eV Total energy + Delta-G solvation = -2424.527635 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.47620 -37.18777 -34.81527 -32.90530 -32.49619 -28.21097 -26.41933 -25.29198 -22.71329 -22.42797 -20.78420 -18.51184 -17.06451 -16.46357 -15.49195 -15.39550 -14.81575 -14.39972 -14.29478 -13.81465 -13.03237 -12.43845 -12.27514 -12.14567 -11.91776 -11.59120 -11.44818 -11.14741 -10.81853 -10.59169 -10.53187 -10.37345 -10.10841 -9.55598 -8.89427 -8.44518 -8.40048 -7.57494 -6.00553 -4.04837 3.33038 3.39129 3.41623 3.46892 3.68088 3.91978 4.48328 4.69834 4.74232 4.79594 5.03623 5.13561 5.32927 5.42586 5.46962 5.60690 5.74395 5.78101 5.96309 5.99327 6.09015 6.26090 7.03616 7.25272 7.48181 7.58053 7.63855 7.96695 8.28000 8.47902 8.95609 9.17046 9.60323 11.07591 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.050137 B = 0.007686 C = 0.007325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.339757 B = 3642.077689 C = 3821.437354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.599 5.599 3 C 0.245 3.755 4 C -0.524 4.524 5 H 0.058 0.942 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.515 3.485 13 O -0.534 6.534 14 C 0.103 3.897 15 H 0.097 0.903 16 N -0.822 5.822 17 C -0.183 4.183 18 C -0.169 4.169 19 C -0.178 4.178 20 H 0.045 0.955 21 H 0.072 0.928 22 H 0.055 0.945 23 H 0.032 0.968 24 H 0.043 0.957 25 H 0.262 0.738 26 H 0.351 0.649 27 H 0.338 0.662 28 H 0.106 0.894 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.654 -12.198 4.181 16.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.332 5.332 3 C 0.126 3.874 4 C -0.563 4.563 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.301 3.699 13 O -0.410 6.410 14 C -0.013 4.013 15 H 0.114 0.886 16 N -0.352 5.352 17 C -0.203 4.203 18 C -0.207 4.207 19 C -0.215 4.215 20 H 0.064 0.936 21 H 0.091 0.909 22 H 0.073 0.927 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.165 0.835 27 H 0.151 0.849 28 H 0.124 0.876 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.112 0.888 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.810 -11.558 3.540 14.957 hybrid contribution -0.138 -0.002 0.013 0.138 sum -8.948 -11.559 3.554 15.044 Atomic orbital electron populations 1.21699 0.81658 1.02249 1.00361 1.48083 1.06065 1.07674 1.71363 1.19280 0.92509 0.78080 0.97506 1.21500 1.36255 1.06147 0.92385 0.92365 1.24946 0.95378 0.96408 0.97469 1.69948 1.38567 1.14391 1.30662 0.86433 0.78094 0.78234 0.84626 1.19761 1.20994 1.20863 1.19974 0.87918 0.84613 0.77436 1.90649 1.13815 1.86928 1.49634 1.21040 0.95846 0.92004 0.92365 0.88555 1.58611 1.10633 1.07975 1.57959 1.23077 0.95313 1.02494 0.99443 1.23007 0.94244 1.00120 1.03316 1.22930 1.04739 0.90770 1.03095 0.93623 0.90947 0.92658 0.95030 0.93928 0.92819 0.83495 0.84897 0.87586 0.88649 0.88359 0.88784 0.88767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.38 9.39 59.85 0.56 1.94 16 2 N -0.60 -13.11 2.86 -182.96 -0.52 -13.63 16 3 C 0.25 6.61 5.16 -5.20 -0.03 6.59 16 4 C -0.52 -15.33 9.39 -34.44 -0.32 -15.65 16 5 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 8 Si 0.90 22.39 29.54 -169.99 -5.02 17.37 16 9 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 12 C 0.52 11.16 6.90 -10.99 -0.08 11.08 16 13 O -0.53 -14.00 15.83 5.56 0.09 -13.91 16 14 C 0.10 1.60 2.63 -68.86 -0.18 1.41 16 15 H 0.10 1.39 6.07 -51.93 -0.32 1.07 16 16 N -0.82 -12.15 8.96 -5.65 -0.05 -12.20 16 17 C -0.18 -2.29 5.05 -90.61 -0.46 -2.75 16 18 C -0.17 -1.69 9.20 -26.73 -0.25 -1.94 16 19 C -0.18 -1.67 9.86 -26.73 -0.26 -1.93 16 20 H 0.05 0.64 7.85 -51.93 -0.41 0.23 16 21 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 22 H 0.05 0.75 5.41 -51.93 -0.28 0.47 16 23 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 24 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 25 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 26 H 0.35 5.34 8.58 -39.29 -0.34 5.00 16 27 H 0.34 3.79 8.30 -39.29 -0.33 3.46 16 28 H 0.11 1.50 8.11 -51.93 -0.42 1.08 16 29 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.10 0.91 7.54 -51.93 -0.39 0.52 16 31 H 0.09 0.79 7.74 -51.93 -0.40 0.38 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 270.43 15.07 4.08 4.08 Total: -1.00 -33.85 270.43 -6.30 -40.15 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -4.50 Total: 4.20 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -1.11 Total: 0.40 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: 0.16 Total: -52.28 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: 0.09 Total: -13.91 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -33.85 -6.30 -40.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399216301.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.346 kcal (2) G-P(sol) polarization free energy of solvation -33.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds