Wall clock time and date at job start Mon Mar 30 2020 02:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46497 * 119.99915 * 2 1 4 4 C 1.50698 * 109.47014 * 270.00069 * 3 2 1 5 5 H 1.08001 * 120.00383 * 359.97438 * 4 3 2 6 6 C 1.37885 * 119.99851 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99755 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99932 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47024 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47143 * 119.99996 * 8 6 4 11 11 H 1.48503 * 109.46640 * 239.99837 * 8 6 4 12 12 C 1.34778 * 120.00054 * 180.02562 * 2 1 3 13 13 O 1.21281 * 120.00111 * 180.02562 * 12 2 1 14 14 C 1.50698 * 119.99962 * 359.97438 * 12 2 1 15 15 H 1.09005 * 109.47412 * 39.99802 * 14 12 2 16 16 N 1.46901 * 109.47352 * 160.00025 * 14 12 2 17 17 C 1.53003 * 109.47204 * 280.00160 * 14 12 2 18 18 C 1.53001 * 117.51964 * 111.28411 * 17 14 12 19 19 C 1.52999 * 60.00190 * 107.47982 * 18 17 14 20 20 H 1.09000 * 109.46963 * 269.99573 * 1 2 3 21 21 H 1.09001 * 109.47394 * 30.00126 * 1 2 3 22 22 H 1.08997 * 109.46890 * 149.99903 * 1 2 3 23 23 H 1.09004 * 109.47212 * 29.99670 * 3 2 1 24 24 H 1.08994 * 109.47137 * 149.99826 * 3 2 1 25 25 H 0.97003 * 119.99769 * 179.97438 * 7 6 4 26 26 H 1.00898 * 110.99992 * 59.99682 * 16 14 12 27 27 H 1.00897 * 111.00264 * 183.95228 * 16 14 12 28 28 H 1.09002 * 115.54973 * 325.58194 * 17 14 12 29 29 H 1.09001 * 117.49733 * 214.97413 * 18 17 14 30 30 H 1.08995 * 117.49577 * 359.97438 * 18 17 14 31 31 H 1.09004 * 117.50150 * 252.51496 * 19 18 17 32 32 H 1.09004 * 117.49681 * 107.48417 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1269 2.8775 -1.6727 7 7 3.5542 3.6176 -0.6731 8 14 3.4376 3.4171 -3.4339 9 1 2.8596 2.4171 -4.3673 10 1 2.8005 4.7382 -3.6666 11 1 4.9001 3.5247 -3.6679 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3854 -2.4723 -0.0005 15 1 0.5217 -2.3932 -0.6607 16 7 2.2675 -3.5470 -0.4748 17 6 0.9140 -2.7890 1.4202 18 6 -0.5898 -2.7292 1.6959 19 6 0.1227 -4.0816 1.6302 20 1 -0.3633 -0.0001 1.0277 21 1 -0.3634 0.8900 -0.5138 22 1 -0.3633 -0.8900 -0.5138 23 1 1.6084 2.0284 0.5138 24 1 3.1499 1.1384 0.5138 25 1 4.0317 4.4431 -0.8503 26 1 3.0763 -3.6404 0.1211 27 1 1.7675 -4.4206 -0.5453 28 1 1.5851 -2.4743 2.2193 29 1 -0.9079 -2.3749 2.6764 30 1 -1.2435 -2.4636 0.8651 31 1 -0.0624 -4.7061 0.7562 32 1 0.2732 -4.6171 2.5676 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399216301.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:55 Heat of formation + Delta-G solvation = -34.575079 kcal Electronic energy + Delta-G solvation = -14421.717843 eV Core-core repulsion = 11996.072535 eV Total energy + Delta-G solvation = -2425.645308 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.98322 -38.36923 -36.63710 -34.71218 -34.01930 -30.16647 -27.80702 -26.98367 -24.58317 -23.17989 -21.96946 -20.01022 -18.73533 -18.49621 -17.20607 -16.60473 -16.29602 -15.91307 -15.79046 -15.15389 -14.60104 -14.11533 -13.75530 -13.65536 -13.49178 -13.18028 -12.93699 -12.67036 -12.45943 -12.31149 -12.21634 -11.69406 -11.46539 -11.27222 -10.66243 -10.48665 -9.65732 -9.40312 -8.23827 -6.38959 1.35353 1.38338 1.50467 1.81628 2.28853 2.43131 2.82471 3.05341 3.59336 3.71151 3.82986 3.99213 4.04170 4.30550 4.47711 4.60555 4.72866 4.79412 4.93680 4.99150 5.01797 5.16084 5.20822 5.27633 5.55140 5.83157 6.04861 6.06691 6.60412 6.69217 6.79542 7.27141 7.49290 8.83481 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.050137 B = 0.007686 C = 0.007325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.339757 B = 3642.077689 C = 3821.437354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.606 5.606 3 C 0.259 3.741 4 C -0.544 4.544 5 H 0.051 0.949 6 C 0.006 3.994 7 N -0.929 5.929 8 Si 0.970 3.030 9 H -0.268 1.268 10 H -0.266 1.266 11 H -0.281 1.281 12 C 0.501 3.499 13 O -0.594 6.594 14 C 0.121 3.879 15 H 0.117 0.883 16 N -0.834 5.834 17 C -0.207 4.207 18 C -0.160 4.160 19 C -0.153 4.153 20 H 0.072 0.928 21 H 0.065 0.935 22 H 0.089 0.911 23 H 0.025 0.975 24 H -0.005 1.005 25 H 0.268 0.732 26 H 0.346 0.654 27 H 0.360 0.640 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.111 0.889 32 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.826 -13.486 3.331 18.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.338 5.338 3 C 0.138 3.862 4 C -0.582 4.582 5 H 0.070 0.930 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.794 3.206 9 H -0.192 1.192 10 H -0.191 1.191 11 H -0.207 1.207 12 C 0.290 3.710 13 O -0.475 6.475 14 C 0.007 3.993 15 H 0.134 0.866 16 N -0.366 5.366 17 C -0.228 4.228 18 C -0.197 4.197 19 C -0.190 4.190 20 H 0.090 0.910 21 H 0.084 0.916 22 H 0.108 0.892 23 H 0.043 0.957 24 H 0.013 0.987 25 H 0.077 0.923 26 H 0.159 0.841 27 H 0.176 0.824 28 H 0.100 0.900 29 H 0.122 0.878 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.053 -12.875 2.699 17.182 hybrid contribution 0.536 0.382 0.338 0.740 sum -10.517 -12.494 3.038 16.611 Atomic orbital electron populations 1.21995 0.78023 1.03647 1.02543 1.48106 1.08342 1.06207 1.71097 1.18746 0.91018 0.80437 0.96019 1.21743 1.36902 1.06546 0.93031 0.93047 1.25893 0.94804 0.96367 1.02187 1.70060 1.38934 1.14870 1.33037 0.85335 0.77935 0.78434 0.78900 1.19221 1.19087 1.20684 1.21192 0.87719 0.86457 0.75670 1.90605 1.16677 1.87992 1.52189 1.20834 0.95126 0.88534 0.94850 0.86594 1.58556 1.10913 1.09023 1.58136 1.22777 0.96858 1.06547 0.96642 1.23176 0.91946 1.00272 1.04334 1.23056 1.01516 0.90024 1.04359 0.90963 0.91570 0.89220 0.95713 0.98691 0.92336 0.84056 0.82377 0.89993 0.87837 0.86865 0.87034 0.87577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.46 9.39 127.77 1.20 3.66 16 2 N -0.61 -26.88 2.86 -851.14 -2.43 -29.31 16 3 C 0.26 14.58 5.16 85.63 0.44 15.02 16 4 C -0.54 -32.59 9.39 25.60 0.24 -32.35 16 5 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 6 C 0.01 0.37 5.46 84.66 0.46 0.83 16 7 N -0.93 -57.55 13.29 21.45 0.28 -57.26 16 8 Si 0.97 46.15 29.54 68.60 2.03 48.18 16 9 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 10 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 11 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 12 C 0.50 22.10 6.90 87.66 0.61 22.71 16 13 O -0.59 -32.70 15.83 -3.03 -0.05 -32.75 16 14 C 0.12 3.59 2.63 44.17 0.12 3.70 16 15 H 0.12 2.95 6.07 -2.38 -0.01 2.93 16 16 N -0.83 -23.62 8.96 -171.79 -1.54 -25.16 16 17 C -0.21 -4.80 5.05 -10.79 -0.05 -4.85 16 18 C -0.16 -2.58 9.20 30.59 0.28 -2.30 16 19 C -0.15 -2.27 9.86 30.60 0.30 -1.97 16 20 H 0.07 1.85 7.85 -2.39 -0.02 1.83 16 21 H 0.07 2.13 8.07 -2.39 -0.02 2.11 16 22 H 0.09 2.13 5.41 -2.39 -0.01 2.12 16 23 H 0.02 1.40 8.07 -2.38 -0.02 1.38 16 24 H -0.01 -0.33 7.42 -2.39 -0.02 -0.34 16 25 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 26 H 0.35 10.53 8.58 -89.70 -0.77 9.76 16 27 H 0.36 7.13 8.30 -89.70 -0.74 6.38 16 28 H 0.08 2.31 8.11 -2.39 -0.02 2.29 16 29 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.11 1.52 7.54 -2.39 -0.02 1.50 16 31 H 0.11 1.31 7.74 -2.39 -0.02 1.30 16 32 H 0.11 1.38 8.14 -2.38 -0.02 1.36 16 Total: -1.00 -76.88 270.43 1.50 -75.37 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -0.38 Total: 16.48 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: 3.59 Total: 4.46 kcal Atomic # 7 Polarization: -108.05 SS G_CDS: -3.69 Total: -111.73 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -0.05 Total: -32.75 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -76.88 1.50 -75.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399216301.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.799 kcal (2) G-P(sol) polarization free energy of solvation -76.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds