Wall clock time and date at job start Mon Mar 30 2020 02:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46895 * 110.99542 * 2 1 4 4 C 1.46897 * 111.00087 * 123.95256 * 2 1 3 5 5 C 1.50693 * 109.47025 * 170.00001 * 4 2 1 6 6 O 1.21284 * 120.00310 * 0.02562 * 5 4 2 7 7 N 1.34780 * 120.00205 * 180.02562 * 5 4 2 8 8 C 1.47579 * 134.49439 * 180.02562 * 7 5 4 9 9 C 1.53950 * 86.11621 * 204.63969 * 8 7 5 10 10 C 1.50698 * 113.74185 * 221.94108 * 9 8 7 11 11 H 1.08004 * 119.99782 * 358.07289 * 10 9 8 12 12 C 1.37878 * 120.00154 * 178.07233 * 10 9 8 13 13 N 1.31517 * 119.99673 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00171 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47027 * 60.00182 * 14 12 10 16 16 H 1.48504 * 109.47302 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47210 * 300.00668 * 14 12 10 18 18 C 1.47925 * 134.49772 * 0.02562 * 7 5 4 19 19 H 1.08992 * 109.46975 * 296.04321 * 1 2 3 20 20 H 1.09002 * 109.47125 * 56.04886 * 1 2 3 21 21 H 1.09003 * 109.46526 * 176.04614 * 1 2 3 22 22 H 1.09005 * 109.47206 * 183.95148 * 3 2 1 23 23 H 1.08999 * 109.47653 * 303.95041 * 3 2 1 24 24 H 1.09000 * 109.47532 * 63.95730 * 3 2 1 25 25 H 1.09003 * 109.46999 * 49.99894 * 4 2 1 26 26 H 1.09001 * 109.47295 * 290.00299 * 4 2 1 27 27 H 1.09003 * 113.77049 * 90.34034 * 8 7 5 28 28 H 1.08993 * 113.77081 * 318.93795 * 8 7 5 29 29 H 1.09002 * 113.74276 * 90.74001 * 9 8 7 30 30 H 0.96999 * 119.99516 * 179.97438 * 13 12 10 31 31 H 1.09006 * 113.87423 * 41.10256 * 18 7 5 32 32 H 1.08997 * 113.77410 * 269.60428 * 18 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 3.4818 -0.9524 0.9728 6 8 4.0470 -0.4922 0.0034 7 7 4.1831 -1.6307 1.9027 8 6 5.6040 -1.9954 2.0642 9 6 5.0977 -3.1608 2.9334 10 6 5.9178 -3.3914 4.1765 11 1 6.7897 -2.7837 4.3687 12 6 5.5550 -4.3781 5.0686 13 7 4.4936 -5.1184 4.8343 14 14 6.5720 -4.6644 6.6091 15 1 6.5866 -3.4267 7.4297 16 1 5.9764 -5.7738 7.3964 17 1 7.9618 -5.0205 6.2258 18 6 3.8378 -2.3087 3.1713 19 1 -0.3633 0.4512 0.9233 20 1 -0.3633 0.5739 -0.8525 21 1 -0.3632 -1.0253 -0.0709 22 1 3.0828 1.3433 -0.0708 23 1 1.5898 1.9163 -0.8524 24 1 1.7044 1.8724 0.9233 25 1 1.5090 -1.7406 1.1756 26 1 1.7976 -0.2247 2.0628 27 1 6.1870 -1.2574 2.6152 28 1 6.0838 -2.3137 1.1388 29 1 4.9089 -4.0765 2.3730 30 1 4.2386 -5.8128 5.4618 31 1 2.9087 -2.8771 3.1291 32 1 3.9032 -1.6626 4.0467 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598030480.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:29 Heat of formation + Delta-G solvation = 6.409533 kcal Electronic energy + Delta-G solvation = -14130.933216 eV Core-core repulsion = 11707.065134 eV Total energy + Delta-G solvation = -2423.868082 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.46301 -37.55309 -35.93062 -32.67533 -29.85930 -27.68538 -27.41727 -25.11128 -24.91354 -22.12532 -20.14432 -18.10151 -16.88413 -16.33558 -15.61808 -15.37955 -14.70577 -14.60598 -14.27924 -13.60291 -13.31065 -12.33544 -12.30396 -12.00873 -11.87660 -11.64006 -11.53364 -11.43516 -11.12579 -10.93778 -10.80675 -10.42152 -9.57584 -9.27300 -8.91600 -8.59967 -8.21796 -7.81285 -6.18889 -4.24491 3.22759 3.24613 3.30118 3.31929 3.45204 4.19450 4.33254 5.00636 5.12460 5.17024 5.36073 5.43588 5.50669 5.68484 5.70296 5.82012 6.07623 6.16588 6.25668 6.30815 6.40778 6.56340 6.64057 6.79615 7.02618 7.11032 7.55094 7.78927 8.16473 8.55108 8.78604 8.84234 9.42356 10.90808 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.061770 B = 0.006379 C = 0.006044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.189337 B = 4388.611088 C = 4631.666847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.531 5.531 3 C 0.019 3.981 4 C 0.042 3.958 5 C 0.526 3.474 6 O -0.551 6.551 7 N -0.644 5.644 8 C 0.105 3.895 9 C 0.034 3.966 10 C -0.520 4.520 11 H 0.062 0.938 12 C 0.068 3.932 13 N -0.887 5.887 14 Si 0.896 3.104 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.275 1.275 18 C 0.104 3.896 19 H 0.024 0.976 20 H 0.069 0.931 21 H 0.068 0.932 22 H 0.089 0.911 23 H 0.064 0.936 24 H 0.017 0.983 25 H 0.100 0.900 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.264 0.736 31 H 0.064 0.936 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.336 7.210 -3.264 10.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.255 5.255 3 C -0.128 4.128 4 C -0.089 4.089 5 C 0.314 3.686 6 O -0.430 6.430 7 N -0.379 5.379 8 C -0.017 4.017 9 C 0.014 3.986 10 C -0.558 4.558 11 H 0.081 0.919 12 C -0.136 4.136 13 N -0.524 5.524 14 Si 0.723 3.277 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.200 1.200 18 C -0.018 4.018 19 H 0.042 0.958 20 H 0.088 0.912 21 H 0.087 0.913 22 H 0.108 0.892 23 H 0.083 0.917 24 H 0.036 0.964 25 H 0.118 0.882 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.118 7.173 -4.277 10.353 hybrid contribution 0.012 0.200 1.740 1.751 sum -6.105 7.373 -2.537 9.904 Atomic orbital electron populations 1.22412 0.87162 1.02320 1.00374 1.61622 1.07169 1.14563 1.42136 1.22555 1.03248 0.87655 0.99386 1.21915 0.93992 1.00233 0.92767 1.20066 0.88547 0.77380 0.82560 1.90589 1.71695 1.49802 1.30917 1.50562 1.11533 1.52948 1.22814 1.23452 0.82082 0.97285 0.98887 1.20492 0.91187 0.92264 0.94612 1.20948 1.11912 1.18034 1.04937 0.91939 1.25019 0.95020 0.95202 0.98313 1.69939 1.24828 1.20936 1.36730 0.86600 0.80501 0.77868 0.82724 1.20115 1.21230 1.20049 1.23760 1.01844 0.93138 0.83090 0.95778 0.91226 0.91275 0.89210 0.91734 0.96410 0.88158 0.92350 0.90941 0.92093 0.91827 0.92592 0.91795 0.90754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.57 60.07 0.57 0.87 16 2 N -0.53 -8.11 4.76 -252.72 -1.20 -9.31 16 3 C 0.02 0.28 9.21 60.06 0.55 0.83 16 4 C 0.04 0.67 5.20 -4.98 -0.03 0.65 16 5 C 0.53 10.53 7.78 -10.99 -0.09 10.45 16 6 O -0.55 -12.51 15.04 5.55 0.08 -12.43 16 7 N -0.64 -13.25 3.62 -178.12 -0.64 -13.89 16 8 C 0.10 2.21 8.39 -2.97 -0.02 2.18 16 9 C 0.03 0.78 3.60 -90.84 -0.33 0.46 16 10 C -0.52 -13.17 8.77 -34.44 -0.30 -13.47 16 11 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 12 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 13 N -0.89 -23.92 13.29 55.43 0.74 -23.18 16 14 Si 0.90 19.94 29.54 -169.99 -5.02 14.91 16 15 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 16 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 18 C 0.10 2.17 8.19 -2.77 -0.02 2.15 16 19 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 20 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 21 H 0.07 0.74 8.12 -51.93 -0.42 0.31 16 22 H 0.09 1.52 5.88 -51.93 -0.31 1.22 16 23 H 0.06 0.79 8.12 -51.93 -0.42 0.37 16 24 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 25 H 0.10 1.51 8.06 -51.93 -0.42 1.09 16 26 H 0.06 0.86 8.12 -51.93 -0.42 0.44 16 27 H 0.07 1.47 8.09 -51.93 -0.42 1.05 16 28 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.06 1.62 8.14 -51.93 -0.42 1.20 16 30 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.07 1.53 8.09 -51.93 -0.42 1.11 16 LS Contribution 273.17 15.07 4.12 4.12 Total: -1.00 -28.71 273.17 -6.60 -35.31 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -4.91 Total: -1.30 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: 0.24 Total: 5.76 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: -1.11 Total: -46.38 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.08 Total: -12.43 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.71 -6.60 -35.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598030480.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.721 kcal (2) G-P(sol) polarization free energy of solvation -28.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds