Wall clock time and date at job start Mon Mar 30 2020 02:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46895 * 110.99542 * 2 1 4 4 C 1.46897 * 111.00087 * 123.95256 * 2 1 3 5 5 C 1.50693 * 109.47025 * 170.00001 * 4 2 1 6 6 O 1.21284 * 120.00310 * 0.02562 * 5 4 2 7 7 N 1.34780 * 120.00205 * 180.02562 * 5 4 2 8 8 C 1.47579 * 134.49439 * 180.02562 * 7 5 4 9 9 C 1.53950 * 86.11621 * 204.63969 * 8 7 5 10 10 C 1.50698 * 113.74185 * 221.94108 * 9 8 7 11 11 H 1.08004 * 119.99782 * 358.07289 * 10 9 8 12 12 C 1.37878 * 120.00154 * 178.07233 * 10 9 8 13 13 N 1.31517 * 119.99673 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00171 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47027 * 60.00182 * 14 12 10 16 16 H 1.48504 * 109.47302 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47210 * 300.00668 * 14 12 10 18 18 C 1.47925 * 134.49772 * 0.02562 * 7 5 4 19 19 H 1.08992 * 109.46975 * 296.04321 * 1 2 3 20 20 H 1.09002 * 109.47125 * 56.04886 * 1 2 3 21 21 H 1.09003 * 109.46526 * 176.04614 * 1 2 3 22 22 H 1.09005 * 109.47206 * 183.95148 * 3 2 1 23 23 H 1.08999 * 109.47653 * 303.95041 * 3 2 1 24 24 H 1.09000 * 109.47532 * 63.95730 * 3 2 1 25 25 H 1.09003 * 109.46999 * 49.99894 * 4 2 1 26 26 H 1.09001 * 109.47295 * 290.00299 * 4 2 1 27 27 H 1.09003 * 113.77049 * 90.34034 * 8 7 5 28 28 H 1.08993 * 113.77081 * 318.93795 * 8 7 5 29 29 H 1.09002 * 113.74276 * 90.74001 * 9 8 7 30 30 H 0.96999 * 119.99516 * 179.97438 * 13 12 10 31 31 H 1.09006 * 113.87423 * 41.10256 * 18 7 5 32 32 H 1.08997 * 113.77410 * 269.60428 * 18 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 3.4818 -0.9524 0.9728 6 8 4.0470 -0.4922 0.0034 7 7 4.1831 -1.6307 1.9027 8 6 5.6040 -1.9954 2.0642 9 6 5.0977 -3.1608 2.9334 10 6 5.9178 -3.3914 4.1765 11 1 6.7897 -2.7837 4.3687 12 6 5.5550 -4.3781 5.0686 13 7 4.4936 -5.1184 4.8343 14 14 6.5720 -4.6644 6.6091 15 1 6.5866 -3.4267 7.4297 16 1 5.9764 -5.7738 7.3964 17 1 7.9618 -5.0205 6.2258 18 6 3.8378 -2.3087 3.1713 19 1 -0.3633 0.4512 0.9233 20 1 -0.3633 0.5739 -0.8525 21 1 -0.3632 -1.0253 -0.0709 22 1 3.0828 1.3433 -0.0708 23 1 1.5898 1.9163 -0.8524 24 1 1.7044 1.8724 0.9233 25 1 1.5090 -1.7406 1.1756 26 1 1.7976 -0.2247 2.0628 27 1 6.1870 -1.2574 2.6152 28 1 6.0838 -2.3137 1.1388 29 1 4.9089 -4.0765 2.3730 30 1 4.2386 -5.8128 5.4618 31 1 2.9087 -2.8771 3.1291 32 1 3.9032 -1.6626 4.0467 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598030480.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:29 Heat of formation + Delta-G solvation = -13.070436 kcal Electronic energy + Delta-G solvation = -14131.777931 eV Core-core repulsion = 11707.065134 eV Total energy + Delta-G solvation = -2424.712797 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.06677 -39.06899 -37.30407 -34.61090 -31.47610 -29.14083 -28.44596 -26.83458 -26.66771 -23.35804 -21.83768 -19.71718 -18.72579 -17.93898 -17.03360 -16.74452 -16.43152 -15.95468 -15.79478 -14.94800 -14.82407 -14.04788 -13.64873 -13.35332 -13.27774 -13.14874 -12.85035 -12.78473 -12.66504 -12.57186 -12.44914 -12.21837 -11.35593 -11.11774 -10.65079 -10.46950 -9.52015 -9.32924 -8.14938 -6.26022 1.49685 1.50736 1.57910 1.66467 1.93808 2.47348 3.02302 3.16390 3.55133 4.11590 4.26479 4.31343 4.34905 4.44383 4.48840 4.58506 4.67371 4.68858 4.70337 4.85892 4.96484 5.00137 5.06630 5.10739 5.61519 5.83181 5.87583 6.07664 6.24245 6.81302 6.92455 7.23890 7.44008 8.94641 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.061770 B = 0.006379 C = 0.006044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.189337 B = 4388.611088 C = 4631.666847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.554 5.554 3 C 0.023 3.977 4 C 0.050 3.950 5 C 0.520 3.480 6 O -0.581 6.581 7 N -0.645 5.645 8 C 0.109 3.891 9 C 0.022 3.978 10 C -0.532 4.532 11 H 0.064 0.936 12 C 0.023 3.977 13 N -0.918 5.918 14 Si 0.957 3.043 15 H -0.268 1.268 16 H -0.287 1.287 17 H -0.273 1.273 18 C 0.120 3.880 19 H 0.037 0.963 20 H 0.084 0.916 21 H 0.075 0.925 22 H 0.057 0.943 23 H 0.083 0.917 24 H 0.031 0.969 25 H 0.112 0.888 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.059 0.941 29 H 0.035 0.965 30 H 0.265 0.735 31 H 0.068 0.932 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.160 8.004 -2.660 11.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.279 5.279 3 C -0.125 4.125 4 C -0.081 4.081 5 C 0.311 3.689 6 O -0.462 6.462 7 N -0.380 5.380 8 C -0.013 4.013 9 C 0.002 3.998 10 C -0.570 4.570 11 H 0.083 0.917 12 C -0.178 4.178 13 N -0.556 5.556 14 Si 0.782 3.218 15 H -0.193 1.193 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.002 4.002 19 H 0.056 0.944 20 H 0.103 0.897 21 H 0.094 0.906 22 H 0.076 0.924 23 H 0.101 0.899 24 H 0.050 0.950 25 H 0.130 0.870 26 H 0.093 0.907 27 H 0.100 0.900 28 H 0.078 0.922 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.951 7.981 -3.677 11.204 hybrid contribution 0.274 -0.035 1.476 1.502 sum -6.677 7.946 -2.201 10.610 Atomic orbital electron populations 1.22485 0.84602 1.03278 1.01729 1.61608 1.09501 1.14898 1.41915 1.22478 1.01292 0.87764 1.00963 1.21864 0.90793 1.01390 0.94005 1.20842 0.90214 0.76312 0.81573 1.90578 1.72737 1.50884 1.31970 1.50566 1.11220 1.53271 1.22955 1.23345 0.82855 0.96624 0.98494 1.20413 0.92914 0.92109 0.94326 1.21246 1.12134 1.18110 1.05522 0.91740 1.25724 0.95972 0.95038 1.01045 1.70042 1.26243 1.21540 1.37766 0.85629 0.78923 0.77834 0.79370 1.19298 1.21236 1.19845 1.23513 1.00707 0.92557 0.83402 0.94442 0.89745 0.90616 0.92412 0.89871 0.95029 0.87013 0.90657 0.89970 0.92227 0.94694 0.92630 0.91348 0.90143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.57 127.69 1.22 1.74 16 2 N -0.55 -15.77 4.76 -953.48 -4.53 -20.30 16 3 C 0.02 0.62 9.21 127.69 1.18 1.79 16 4 C 0.05 1.52 5.20 85.56 0.44 1.96 16 5 C 0.52 20.42 7.78 87.65 0.68 21.10 16 6 O -0.58 -26.31 15.04 -3.04 -0.05 -26.36 16 7 N -0.65 -26.16 3.62 -835.83 -3.02 -29.18 16 8 C 0.11 4.58 8.39 86.49 0.73 5.30 16 9 C 0.02 1.02 3.60 -10.88 -0.04 0.98 16 10 C -0.53 -26.80 8.77 25.60 0.22 -26.57 16 11 H 0.06 3.15 7.81 -2.91 -0.02 3.13 16 12 C 0.02 1.15 5.46 84.65 0.46 1.61 16 13 N -0.92 -49.47 13.29 21.45 0.28 -49.19 16 14 Si 0.96 40.38 29.54 68.60 2.03 42.41 16 15 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 16 H -0.29 -12.02 7.11 99.48 0.71 -11.31 16 17 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 18 C 0.12 4.94 8.19 86.42 0.71 5.64 16 19 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 20 H 0.08 1.42 8.12 -2.39 -0.02 1.41 16 21 H 0.08 1.40 8.12 -2.39 -0.02 1.38 16 22 H 0.06 1.93 5.88 -2.38 -0.01 1.92 16 23 H 0.08 1.87 8.12 -2.39 -0.02 1.85 16 24 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.11 3.11 8.06 -2.39 -0.02 3.09 16 26 H 0.08 2.03 8.12 -2.39 -0.02 2.01 16 27 H 0.08 3.27 8.09 -2.39 -0.02 3.26 16 28 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.03 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.26 13.63 8.31 -92.71 -0.77 12.86 16 31 H 0.07 2.73 8.14 -2.38 -0.02 2.71 16 32 H 0.08 3.21 8.09 -2.39 -0.02 3.19 16 Total: -1.00 -60.20 273.17 1.40 -58.80 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: 1.08 Total: 10.25 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: 5.61 Total: 13.56 kcal Atomic # 7 Polarization: -91.39 SS G_CDS: -7.27 Total: -98.67 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.05 Total: -26.36 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.41 kcal Total: -60.20 1.40 -58.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598030480.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.734 kcal (2) G-P(sol) polarization free energy of solvation -60.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds