Wall clock time and date at job start Mon Mar 30 2020 02:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46501 * 120.00286 * 2 1 4 4 C 1.53005 * 109.46993 * 89.99476 * 3 2 1 5 5 C 1.53935 * 113.73242 * 174.99933 * 4 3 2 6 6 N 1.47962 * 86.30001 * 138.02883 * 5 4 3 7 7 C 1.46897 * 111.00037 * 222.47236 * 6 5 4 8 8 C 1.48187 * 90.67343 * 335.41160 * 6 5 4 9 9 C 1.34783 * 119.99891 * 180.02562 * 2 1 3 10 10 O 1.21684 * 119.99669 * 180.02562 * 9 2 1 11 11 C 1.46374 * 119.99980 * 0.02562 * 9 2 1 12 12 H 1.07999 * 119.99620 * 359.97438 * 11 9 2 13 13 C 1.40044 * 119.99462 * 180.02562 * 11 9 2 14 14 N 1.30665 * 120.00689 * 359.97438 * 13 11 9 15 15 Si 1.86808 * 119.99376 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47080 * 89.99994 * 15 13 11 17 17 H 1.48504 * 109.47013 * 209.99606 * 15 13 11 18 18 H 1.48490 * 109.47295 * 329.99851 * 15 13 11 19 19 H 1.09001 * 109.47031 * 89.99974 * 1 2 3 20 20 H 1.09000 * 109.47292 * 209.99514 * 1 2 3 21 21 H 1.08999 * 109.47526 * 329.99950 * 1 2 3 22 22 H 1.09004 * 109.46847 * 330.00123 * 3 2 1 23 23 H 1.08992 * 109.47388 * 210.00076 * 3 2 1 24 24 H 1.09005 * 112.93265 * 43.43983 * 4 3 2 25 25 H 1.09002 * 113.76229 * 252.40280 * 5 4 3 26 26 H 1.09005 * 113.75703 * 23.65805 * 5 4 3 27 27 H 1.08997 * 109.47192 * 60.00266 * 7 6 5 28 28 H 1.09005 * 109.47086 * 179.97438 * 7 6 5 29 29 H 1.08992 * 109.47437 * 300.00082 * 7 6 5 30 30 H 1.09005 * 113.65869 * 270.26633 * 8 6 5 31 31 H 1.09002 * 113.92722 * 138.95266 * 8 6 5 32 32 H 0.97004 * 120.00708 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 1.4426 5 6 3.3239 2.9740 1.5588 6 7 2.3851 3.4078 2.6170 7 6 2.0592 4.8336 2.4794 8 6 1.3159 2.5588 2.0408 9 6 2.1389 -1.1673 -0.0005 10 8 3.3557 -1.1672 -0.0001 11 6 1.4070 -2.4349 -0.0017 12 1 0.3270 -2.4348 -0.0017 13 6 2.1073 -3.6477 -0.0017 14 7 3.4139 -3.6477 -0.0011 15 14 1.1732 -5.2654 -0.0024 16 1 0.9262 -5.6938 -1.4027 17 1 1.9755 -6.3006 0.6977 18 1 -0.1246 -5.0880 0.6972 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3634 -0.8900 0.5137 21 1 -0.3634 0.8899 0.5138 22 1 1.6084 2.0284 -0.5138 23 1 3.1499 1.1384 -0.5138 24 1 2.7773 0.8927 2.0860 25 1 4.3336 2.7794 1.9203 26 1 3.3047 3.6040 0.6694 27 1 1.5961 5.0084 1.5083 28 1 1.3673 5.1259 3.2694 29 1 2.9718 5.4242 2.5584 30 1 0.7079 3.0683 1.2932 31 1 0.7201 2.0318 2.7861 32 1 3.8990 -4.4878 -0.0008 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598159589.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:45 Heat of formation + Delta-G solvation = 1.397945 kcal Electronic energy + Delta-G solvation = -14363.434488 eV Core-core repulsion = 11939.349087 eV Total energy + Delta-G solvation = -2424.085401 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.73013 -37.38460 -33.89472 -32.41699 -30.88223 -27.52201 -26.08014 -25.72302 -24.64698 -22.15635 -19.48069 -18.96605 -16.42845 -15.71433 -15.58300 -15.22308 -14.74791 -14.19765 -14.04686 -13.31438 -13.00904 -12.53826 -12.22657 -11.83800 -11.54637 -11.38100 -11.15721 -11.12828 -11.10309 -10.84149 -10.39749 -10.28898 -10.11693 -9.96560 -8.84865 -8.70458 -7.56037 -7.16776 -6.17415 -4.62679 3.14717 3.21688 3.24779 4.09795 4.13329 4.51810 4.59552 4.90597 5.08232 5.20093 5.39873 5.57033 5.64855 5.75055 5.80929 5.83123 5.92566 6.00654 6.04100 6.15342 6.39781 6.46131 6.56236 6.57280 6.77425 7.21080 7.46208 7.65846 8.16317 8.37647 9.04128 9.45056 10.59867 10.78795 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.059415 B = 0.007166 C = 0.006820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.146142 B = 3906.503633 C = 4104.592713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.647 5.647 3 C 0.136 3.864 4 C -0.120 4.120 5 C 0.005 3.995 6 N -0.488 5.488 7 C -0.009 4.009 8 C 0.006 3.994 9 C 0.556 3.444 10 O -0.576 6.576 11 C -0.544 4.544 12 H 0.072 0.928 13 C 0.087 3.913 14 N -0.768 5.768 15 Si 0.906 3.094 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.265 1.265 19 H 0.029 0.971 20 H 0.071 0.929 21 H 0.039 0.961 22 H 0.050 0.950 23 H 0.075 0.925 24 H 0.102 0.898 25 H 0.087 0.913 26 H 0.066 0.934 27 H 0.031 0.969 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.388 10.337 1.670 11.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.385 5.385 3 C 0.011 3.989 4 C -0.140 4.140 5 C -0.124 4.124 6 N -0.210 5.210 7 C -0.159 4.159 8 C -0.122 4.122 9 C 0.361 3.639 10 O -0.459 6.459 11 C -0.580 4.580 12 H 0.090 0.910 13 C -0.132 4.132 14 N -0.396 5.396 15 Si 0.731 3.269 16 H -0.198 1.198 17 H -0.205 1.205 18 H -0.189 1.189 19 H 0.047 0.953 20 H 0.090 0.910 21 H 0.058 0.942 22 H 0.068 0.932 23 H 0.094 0.906 24 H 0.121 0.879 25 H 0.105 0.895 26 H 0.084 0.916 27 H 0.050 0.950 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.369 10.185 2.364 11.331 hybrid contribution -0.867 -0.443 -0.801 1.261 sum -5.236 9.741 1.563 11.169 Atomic orbital electron populations 1.21374 0.82356 1.01000 0.99392 1.47960 1.05044 1.05297 1.80228 1.20986 0.97708 0.86562 0.93600 1.23433 0.94638 0.96637 0.99328 1.23954 0.98480 0.96369 0.93591 1.68506 1.07740 1.04054 1.40722 1.22835 1.01306 0.91550 1.00174 1.24106 0.94906 0.95279 0.97914 1.18256 0.86994 0.82295 0.76312 1.90594 1.14005 1.86304 1.54989 1.21013 0.93690 0.89307 1.54040 0.91018 1.25733 0.94593 1.00290 0.92619 1.70017 1.07064 1.27237 1.35318 0.86404 0.80195 0.81541 0.78810 1.19767 1.20471 1.18902 0.95253 0.91047 0.94220 0.93157 0.90631 0.87935 0.89501 0.91562 0.95018 0.91574 0.91706 0.91695 0.89755 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.90 10.15 59.84 0.61 2.51 16 2 N -0.65 -14.64 2.87 -183.25 -0.53 -15.17 16 3 C 0.14 2.63 5.26 -4.04 -0.02 2.61 16 4 C -0.12 -2.12 4.15 -89.68 -0.37 -2.49 16 5 C 0.01 0.08 7.55 -2.77 -0.02 0.06 16 6 N -0.49 -7.18 6.56 -245.65 -1.61 -8.80 16 7 C -0.01 -0.11 9.65 60.06 0.58 0.47 16 8 C 0.01 0.10 7.17 -2.65 -0.02 0.08 16 9 C 0.56 15.80 7.61 -12.98 -0.10 15.71 16 10 O -0.58 -18.57 14.60 5.20 0.08 -18.49 16 11 C -0.54 -15.28 8.74 -35.63 -0.31 -15.59 16 12 H 0.07 1.84 6.00 -52.49 -0.31 1.53 16 13 C 0.09 2.44 5.50 -17.37 -0.10 2.34 16 14 N -0.77 -23.04 11.83 55.55 0.66 -22.39 16 15 Si 0.91 20.10 29.56 -169.99 -5.02 15.08 16 16 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 17 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 18 H -0.26 -5.67 7.11 56.52 0.40 -5.26 16 19 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 20 H 0.07 1.37 6.09 -51.93 -0.32 1.05 16 21 H 0.04 0.60 7.70 -51.93 -0.40 0.20 16 22 H 0.05 0.82 7.77 -51.93 -0.40 0.41 16 23 H 0.08 1.63 7.42 -51.93 -0.39 1.24 16 24 H 0.10 2.18 8.14 -51.93 -0.42 1.76 16 25 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 26 H 0.07 0.88 7.88 -51.93 -0.41 0.47 16 27 H 0.03 0.34 7.62 -51.93 -0.40 -0.06 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.86 7.37 -51.93 -0.38 0.48 16 31 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 LS Contribution 267.51 15.07 4.03 4.03 Total: -1.00 -33.27 267.51 -6.83 -40.10 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -4.68 Total: -0.06 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 0.25 Total: 5.69 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: -1.48 Total: -46.35 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: 0.08 Total: -18.49 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -33.27 -6.83 -40.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598159589.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.495 kcal (2) G-P(sol) polarization free energy of solvation -33.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds