Wall clock time and date at job start Mon Mar 30 2020 02:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46501 * 120.00286 * 2 1 4 4 C 1.53005 * 109.46993 * 89.99476 * 3 2 1 5 5 C 1.53935 * 113.73242 * 174.99933 * 4 3 2 6 6 N 1.47962 * 86.30001 * 138.02883 * 5 4 3 7 7 C 1.46897 * 111.00037 * 222.47236 * 6 5 4 8 8 C 1.48187 * 90.67343 * 335.41160 * 6 5 4 9 9 C 1.34783 * 119.99891 * 180.02562 * 2 1 3 10 10 O 1.21684 * 119.99669 * 180.02562 * 9 2 1 11 11 C 1.46374 * 119.99980 * 0.02562 * 9 2 1 12 12 H 1.07999 * 119.99620 * 359.97438 * 11 9 2 13 13 C 1.40044 * 119.99462 * 180.02562 * 11 9 2 14 14 N 1.30665 * 120.00689 * 359.97438 * 13 11 9 15 15 Si 1.86808 * 119.99376 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47080 * 89.99994 * 15 13 11 17 17 H 1.48504 * 109.47013 * 209.99606 * 15 13 11 18 18 H 1.48490 * 109.47295 * 329.99851 * 15 13 11 19 19 H 1.09001 * 109.47031 * 89.99974 * 1 2 3 20 20 H 1.09000 * 109.47292 * 209.99514 * 1 2 3 21 21 H 1.08999 * 109.47526 * 329.99950 * 1 2 3 22 22 H 1.09004 * 109.46847 * 330.00123 * 3 2 1 23 23 H 1.08992 * 109.47388 * 210.00076 * 3 2 1 24 24 H 1.09005 * 112.93265 * 43.43983 * 4 3 2 25 25 H 1.09002 * 113.76229 * 252.40280 * 5 4 3 26 26 H 1.09005 * 113.75703 * 23.65805 * 5 4 3 27 27 H 1.08997 * 109.47192 * 60.00266 * 7 6 5 28 28 H 1.09005 * 109.47086 * 179.97438 * 7 6 5 29 29 H 1.08992 * 109.47437 * 300.00082 * 7 6 5 30 30 H 1.09005 * 113.65869 * 270.26633 * 8 6 5 31 31 H 1.09002 * 113.92722 * 138.95266 * 8 6 5 32 32 H 0.97004 * 120.00708 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 1.4426 5 6 3.3239 2.9740 1.5588 6 7 2.3851 3.4078 2.6170 7 6 2.0592 4.8336 2.4794 8 6 1.3159 2.5588 2.0408 9 6 2.1389 -1.1673 -0.0005 10 8 3.3557 -1.1672 -0.0001 11 6 1.4070 -2.4349 -0.0017 12 1 0.3270 -2.4348 -0.0017 13 6 2.1073 -3.6477 -0.0017 14 7 3.4139 -3.6477 -0.0011 15 14 1.1732 -5.2654 -0.0024 16 1 0.9262 -5.6938 -1.4027 17 1 1.9755 -6.3006 0.6977 18 1 -0.1246 -5.0880 0.6972 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3634 -0.8900 0.5137 21 1 -0.3634 0.8899 0.5138 22 1 1.6084 2.0284 -0.5138 23 1 3.1499 1.1384 -0.5138 24 1 2.7773 0.8927 2.0860 25 1 4.3336 2.7794 1.9203 26 1 3.3047 3.6040 0.6694 27 1 1.5961 5.0084 1.5083 28 1 1.3673 5.1259 3.2694 29 1 2.9718 5.4242 2.5584 30 1 0.7079 3.0683 1.2932 31 1 0.7201 2.0318 2.7861 32 1 3.8990 -4.4878 -0.0008 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598159589.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:45 Heat of formation + Delta-G solvation = -24.566260 kcal Electronic energy + Delta-G solvation = -14364.560380 eV Core-core repulsion = 11939.349087 eV Total energy + Delta-G solvation = -2425.211293 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.01549 -39.31046 -35.79579 -34.57109 -32.20171 -29.10627 -27.81569 -27.01610 -26.25288 -23.55355 -21.12087 -20.52096 -18.39099 -17.63042 -17.04248 -16.51761 -16.28408 -15.81406 -15.50479 -14.94403 -14.46204 -13.85770 -13.63837 -13.39137 -13.29662 -13.04874 -12.87801 -12.75387 -12.46947 -12.29090 -12.11619 -12.01162 -11.64843 -11.37211 -10.91335 -9.86240 -9.72145 -9.00291 -8.26523 -6.81783 1.40442 1.42018 1.57007 2.25224 2.48379 2.88430 2.99305 3.60863 3.62738 3.86629 4.14467 4.32573 4.35059 4.49709 4.59308 4.60420 4.65108 4.75926 4.80923 4.93600 4.98299 5.04070 5.05894 5.30832 5.35059 5.39134 5.79885 6.12688 6.17988 6.46122 6.90051 7.45283 8.50705 8.70382 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.059415 B = 0.007166 C = 0.006820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.146142 B = 3906.503633 C = 4104.592713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.650 5.650 3 C 0.138 3.862 4 C -0.128 4.128 5 C 0.015 3.985 6 N -0.506 5.506 7 C -0.010 4.010 8 C 0.022 3.978 9 C 0.537 3.463 10 O -0.631 6.631 11 C -0.570 4.570 12 H 0.093 0.907 13 C 0.027 3.973 14 N -0.824 5.824 15 Si 0.995 3.005 16 H -0.261 1.261 17 H -0.275 1.275 18 H -0.247 1.247 19 H 0.044 0.956 20 H 0.060 0.940 21 H 0.078 0.922 22 H 0.092 0.908 23 H 0.042 0.958 24 H 0.052 0.948 25 H 0.077 0.923 26 H 0.091 0.909 27 H 0.046 0.954 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.889 11.318 1.559 13.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.386 5.386 3 C 0.014 3.986 4 C -0.149 4.149 5 C -0.115 4.115 6 N -0.229 5.229 7 C -0.159 4.159 8 C -0.107 4.107 9 C 0.342 3.658 10 O -0.518 6.518 11 C -0.606 4.606 12 H 0.111 0.889 13 C -0.187 4.187 14 N -0.454 5.454 15 Si 0.814 3.186 16 H -0.186 1.186 17 H -0.200 1.200 18 H -0.170 1.170 19 H 0.063 0.937 20 H 0.079 0.921 21 H 0.097 0.903 22 H 0.110 0.890 23 H 0.060 0.940 24 H 0.071 0.929 25 H 0.095 0.905 26 H 0.109 0.891 27 H 0.065 0.935 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.111 0.889 31 H 0.099 0.901 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.923 11.225 2.256 13.380 hybrid contribution -0.091 -0.633 -0.761 0.994 sum -7.014 10.592 1.495 12.791 Atomic orbital electron populations 1.21564 0.79488 1.02451 1.00770 1.47829 1.06973 1.04965 1.78801 1.21136 0.96585 0.86036 0.94863 1.23228 0.97840 0.96479 0.97355 1.23916 0.97792 0.95024 0.94717 1.68467 1.07507 1.06191 1.40698 1.22906 1.02214 0.89342 1.01407 1.24056 0.94138 0.94422 0.98045 1.18666 0.86657 0.84388 0.76057 1.90541 1.16289 1.87635 1.57342 1.21556 0.94898 0.89947 1.54243 0.88922 1.27002 0.95473 1.05001 0.91257 1.70200 1.09588 1.28783 1.36792 0.85061 0.78864 0.75227 0.79412 1.18593 1.20024 1.17045 0.93739 0.92090 0.90313 0.88983 0.93984 0.92938 0.90485 0.89119 0.93528 0.90538 0.90812 0.88941 0.90124 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.47 10.15 127.77 1.30 4.77 16 2 N -0.65 -29.41 2.87 -851.89 -2.45 -31.86 16 3 C 0.14 5.27 5.26 86.38 0.45 5.72 16 4 C -0.13 -4.54 4.15 -10.15 -0.04 -4.58 16 5 C 0.01 0.42 7.55 86.41 0.65 1.08 16 6 N -0.51 -13.85 6.56 -931.09 -6.11 -19.96 16 7 C -0.01 -0.20 9.65 127.69 1.23 1.03 16 8 C 0.02 0.59 7.17 86.36 0.62 1.21 16 9 C 0.54 31.56 7.61 86.36 0.66 32.21 16 10 O -0.63 -42.94 14.60 -4.30 -0.06 -43.00 16 11 C -0.57 -32.47 8.74 24.83 0.22 -32.25 16 12 H 0.09 4.70 6.00 -2.91 -0.02 4.68 16 13 C 0.03 1.55 5.50 85.30 0.47 2.01 16 14 N -0.82 -51.29 11.83 21.83 0.26 -51.03 16 15 Si 0.99 41.26 29.56 68.60 2.03 43.29 16 16 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 17 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 18 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 19 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 20 H 0.06 2.24 6.09 -2.39 -0.01 2.22 16 21 H 0.08 2.10 7.70 -2.39 -0.02 2.08 16 22 H 0.09 2.72 7.77 -2.39 -0.02 2.70 16 23 H 0.04 1.87 7.42 -2.39 -0.02 1.85 16 24 H 0.05 2.37 8.14 -2.38 -0.02 2.35 16 25 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 26 H 0.09 2.17 7.88 -2.38 -0.02 2.15 16 27 H 0.05 0.79 7.62 -2.39 -0.02 0.78 16 28 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.09 2.02 7.37 -2.38 -0.02 2.00 16 31 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.27 15.41 8.29 -92.71 -0.77 14.64 16 Total: -1.00 -76.35 267.51 0.31 -76.03 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 1.09 Total: 15.33 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: 5.56 Total: 11.21 kcal Atomic # 7 Polarization: -94.55 SS G_CDS: -8.30 Total: -102.85 kcal Atomic # 8 Polarization: -42.94 SS G_CDS: -0.06 Total: -43.00 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Total: -76.35 0.31 -76.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598159589.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.465 kcal (2) G-P(sol) polarization free energy of solvation -76.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds