Wall clock time and date at job start Mon Mar 30 2020 02:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46903 * 109.46743 * 2 1 4 4 C 1.46893 * 110.99726 * 64.85227 * 3 2 1 5 5 C 1.50702 * 109.47514 * 282.31309 * 4 3 2 6 6 H 1.08002 * 119.99540 * 354.81378 * 5 4 3 7 7 C 1.37878 * 120.00049 * 174.81112 * 5 4 3 8 8 N 1.31516 * 119.99597 * 179.97438 * 7 5 4 9 9 Si 1.86789 * 120.00064 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47038 * 90.00454 * 9 7 5 11 11 H 1.48500 * 109.47293 * 209.99982 * 9 7 5 12 12 H 1.48494 * 109.47698 * 330.00562 * 9 7 5 13 13 C 1.46901 * 111.00051 * 188.80832 * 3 2 1 14 14 H 1.09000 * 110.43839 * 182.20584 * 13 3 2 15 15 C 1.54631 * 110.48876 * 59.51773 * 13 3 2 16 16 C 1.54475 * 101.76732 * 266.12555 * 15 13 3 17 17 N 1.46765 * 105.47541 * 334.58101 * 16 15 13 18 18 C 1.34424 * 111.29615 * 17.01671 * 17 16 15 19 19 O 1.21281 * 124.94170 * 179.55405 * 18 17 16 20 20 H 1.08998 * 109.47018 * 292.62027 * 1 2 3 21 21 H 1.08995 * 109.47688 * 52.63049 * 1 2 3 22 22 H 1.09003 * 109.46673 * 172.62670 * 1 2 3 23 23 H 1.08995 * 109.47546 * 119.99910 * 2 1 3 24 24 H 1.08998 * 109.47210 * 240.00205 * 2 1 3 25 25 H 1.09001 * 109.47462 * 42.31926 * 4 3 2 26 26 H 1.09009 * 109.47010 * 162.31874 * 4 3 2 27 27 H 0.97001 * 120.00122 * 179.97438 * 8 7 5 28 28 H 1.09003 * 110.96435 * 24.24065 * 15 13 3 29 29 H 1.08998 * 110.96704 * 147.99987 * 15 13 3 30 30 H 1.09003 * 110.24610 * 215.58321 * 16 15 13 31 31 H 1.08992 * 110.32412 * 93.62319 * 16 15 13 32 32 H 0.96995 * 124.35271 * 197.03921 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6455 2.0755 1.2414 5 6 0.1951 2.4791 1.1744 6 1 -0.3678 2.3215 0.2663 7 6 -0.4132 3.0496 2.2724 8 7 -1.6788 3.4023 2.2137 9 14 0.5603 3.3215 3.8432 10 1 1.1933 4.6644 3.8071 11 1 -0.3517 3.2355 5.0120 12 1 1.6133 2.2810 3.9595 13 6 3.4728 1.4297 -0.2100 14 1 3.8318 2.4581 -0.1696 15 6 3.8448 0.7764 -1.5613 16 6 4.1594 -0.6743 -1.1338 17 7 4.5609 -0.5890 0.2753 18 6 4.1831 0.5801 0.8207 19 8 4.3819 0.9060 1.9718 20 1 -0.3633 0.3953 0.9486 21 1 -0.3634 0.6237 -0.8167 22 1 -0.3633 -1.0192 -0.1319 23 1 1.8934 -0.5138 0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.7980 1.4073 2.0890 26 1 2.2647 2.9644 1.3635 27 1 -2.1069 3.8032 2.9862 28 1 3.0030 0.8053 -2.2532 29 1 4.7225 1.2539 -1.9969 30 1 4.9752 -1.0761 -1.7348 31 1 3.2727 -1.2998 -1.2361 32 1 5.0379 -1.2864 0.7517 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610899107.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:22 Heat of formation + Delta-G solvation = -46.400500 kcal Electronic energy + Delta-G solvation = -15001.023652 eV Core-core repulsion = 12574.865555 eV Total energy + Delta-G solvation = -2426.158097 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.85496 -38.25335 -37.01837 -34.56012 -32.25429 -31.15795 -29.31400 -27.15259 -24.09814 -22.70614 -22.59122 -20.63357 -18.93352 -18.39717 -17.76114 -16.58822 -16.56779 -15.62357 -15.28500 -15.06599 -14.72011 -14.49460 -14.43585 -13.60815 -13.25946 -13.04180 -12.97613 -12.74482 -12.55027 -12.10041 -12.02629 -11.91841 -11.45660 -11.29017 -11.21451 -10.70508 -10.03022 -9.15263 -8.27183 -6.23284 1.26512 1.29428 1.43387 1.46014 2.31925 2.42211 3.03425 3.04913 3.49997 3.64757 4.11092 4.19415 4.24148 4.40202 4.58475 4.69446 4.82818 4.87022 4.90157 5.03214 5.17049 5.18646 5.31906 5.54640 5.73257 5.82293 5.91372 6.00508 6.29631 6.54712 6.80056 7.21526 7.35455 8.87646 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.038418 B = 0.011186 C = 0.009599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.642664 B = 2502.531158 C = 2916.278139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.056 3.944 3 N -0.502 5.502 4 C 0.172 3.828 5 C -0.492 4.492 6 H 0.068 0.932 7 C 0.019 3.981 8 N -0.938 5.938 9 Si 0.920 3.080 10 H -0.267 1.267 11 H -0.278 1.278 12 H -0.275 1.275 13 C 0.037 3.963 14 H 0.101 0.899 15 C -0.116 4.116 16 C 0.093 3.907 17 N -0.718 5.718 18 C 0.479 3.521 19 O -0.590 6.590 20 H 0.044 0.956 21 H 0.050 0.950 22 H 0.065 0.935 23 H 0.004 0.996 24 H 0.113 0.887 25 H -0.024 1.024 26 H 0.012 0.988 27 H 0.265 0.735 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.121 0.879 31 H 0.086 0.914 32 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.491 -10.171 -9.897 18.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.071 4.071 3 N -0.227 5.227 4 C 0.045 3.955 5 C -0.531 4.531 6 H 0.086 0.914 7 C -0.179 4.179 8 N -0.580 5.580 9 Si 0.746 3.254 10 H -0.192 1.192 11 H -0.203 1.203 12 H -0.200 1.200 13 C -0.076 4.076 14 H 0.119 0.881 15 C -0.153 4.153 16 C -0.030 4.030 17 N -0.373 5.373 18 C 0.263 3.737 19 O -0.469 6.469 20 H 0.063 0.937 21 H 0.070 0.930 22 H 0.083 0.917 23 H 0.022 0.978 24 H 0.130 0.870 25 H -0.006 1.006 26 H 0.030 0.970 27 H 0.074 0.926 28 H 0.130 0.870 29 H 0.131 0.869 30 H 0.139 0.861 31 H 0.104 0.896 32 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 12.164 -9.598 -9.670 18.265 hybrid contribution 0.589 -0.195 2.270 2.353 sum 12.753 -9.793 -7.401 17.701 Atomic orbital electron populations 1.21890 0.94953 1.00299 1.02587 1.22337 0.96616 0.88008 1.00179 1.62409 1.07853 1.15784 1.36640 1.19949 0.95771 0.92908 0.86857 1.21312 0.94509 1.37517 0.99715 0.91397 1.25497 0.95533 0.95733 1.01137 1.69982 1.12021 1.44353 1.31640 0.86125 0.79042 0.79252 0.80991 1.19236 1.20302 1.20035 1.22914 0.88308 1.00302 0.96065 0.88126 1.22767 1.04513 0.94034 0.94011 1.22584 1.02640 0.97901 0.79835 1.46292 1.58199 1.18204 1.14645 1.22497 0.77750 0.84832 0.88596 1.90699 1.58480 1.76777 1.20961 0.93728 0.93048 0.91655 0.97794 0.86973 1.00620 0.96978 0.92551 0.87020 0.86909 0.86099 0.89615 0.74709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.47 8.51 71.98 0.61 -4.86 16 2 C 0.06 1.96 4.39 86.30 0.38 2.34 16 3 N -0.50 -20.27 4.51 -875.56 -3.95 -24.22 16 4 C 0.17 8.88 3.07 85.56 0.26 9.14 16 5 C -0.49 -28.45 7.10 25.60 0.18 -28.27 16 6 H 0.07 4.16 6.35 -2.91 -0.02 4.14 16 7 C 0.02 1.12 5.47 84.65 0.46 1.58 16 8 N -0.94 -58.85 13.96 21.45 0.30 -58.55 16 9 Si 0.92 47.94 27.57 68.60 1.89 49.83 16 10 H -0.27 -13.44 7.11 99.48 0.71 -12.73 16 11 H -0.28 -13.91 7.11 99.48 0.71 -13.21 16 12 H -0.28 -14.83 6.39 99.48 0.64 -14.20 16 13 C 0.04 1.18 3.13 44.91 0.14 1.32 16 14 H 0.10 3.40 7.95 -2.39 -0.02 3.38 16 15 C -0.12 -2.13 6.23 31.65 0.20 -1.94 16 16 C 0.09 1.37 6.89 86.83 0.60 1.97 16 17 N -0.72 -16.60 6.16 -459.81 -2.83 -19.43 16 18 C 0.48 16.81 6.22 87.90 0.55 17.35 16 19 O -0.59 -27.40 17.45 -3.03 -0.05 -27.46 16 20 H 0.04 2.17 5.84 -2.39 -0.01 2.16 16 21 H 0.05 2.08 7.45 -2.39 -0.02 2.06 16 22 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 23 H 0.00 0.15 7.20 -2.39 -0.02 0.13 16 24 H 0.11 2.85 4.45 -2.39 -0.01 2.84 16 25 H -0.02 -1.35 6.23 -2.39 -0.01 -1.37 16 26 H 0.01 0.65 7.47 -2.38 -0.02 0.63 16 27 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 28 H 0.11 1.94 7.83 -2.39 -0.02 1.92 16 29 H 0.11 1.49 8.14 -2.39 -0.02 1.48 16 30 H 0.12 0.85 8.14 -2.39 -0.02 0.84 16 31 H 0.09 1.16 6.03 -2.39 -0.01 1.15 16 32 H 0.41 8.04 8.96 -92.71 -0.83 7.21 16 Total: -1.00 -76.76 249.79 -1.04 -77.80 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: 0.23 Total: 3.38 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: 3.38 Total: -1.36 kcal Atomic # 7 Polarization: -95.71 SS G_CDS: -6.48 Total: -102.20 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.05 Total: -27.46 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 1.89 Total: 49.83 kcal Total: -76.76 -1.04 -77.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610899107.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.398 kcal (2) G-P(sol) polarization free energy of solvation -76.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds