Wall clock time and date at job start Mon Mar 30 2020 02:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.46998 * 2 1 4 4 C 1.34777 * 120.00124 * 89.99868 * 3 2 1 5 5 O 1.21685 * 119.99943 * 180.02562 * 4 3 2 6 6 C 1.46376 * 120.00009 * 0.02562 * 4 3 2 7 7 H 1.08002 * 119.99689 * 359.97438 * 6 4 3 8 8 C 1.40040 * 120.00329 * 180.02562 * 6 4 3 9 9 N 1.30671 * 119.99908 * 359.97438 * 8 6 4 10 10 Si 1.86800 * 120.00150 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47117 * 59.99942 * 10 8 6 12 12 H 1.48504 * 109.46896 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.46947 * 299.99395 * 10 8 6 14 14 C 1.46503 * 119.99822 * 270.00192 * 3 2 1 15 15 H 1.08996 * 110.28811 * 357.87454 * 14 3 2 16 16 C 1.54259 * 110.32208 * 120.00106 * 14 3 2 17 17 C 1.54379 * 105.06216 * 118.89637 * 16 14 3 18 18 N 1.48554 * 104.59352 * 23.84868 * 17 16 14 19 19 C 1.48560 * 104.22564 * 320.51718 * 18 17 16 20 20 H 1.09000 * 109.47050 * 299.99945 * 1 2 3 21 21 H 1.09001 * 109.46801 * 60.00058 * 1 2 3 22 22 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.46955 * 120.00226 * 2 1 3 24 24 H 1.09000 * 109.47050 * 240.00054 * 2 1 3 25 25 H 0.96998 * 120.00304 * 180.02562 * 9 8 6 26 26 H 1.09001 * 110.32355 * 237.79042 * 16 14 3 27 27 H 1.08997 * 110.32760 * 359.97438 * 16 14 3 28 28 H 1.09000 * 110.41473 * 142.62949 * 17 16 14 29 29 H 1.09000 * 110.40927 * 265.06926 * 17 16 14 30 30 H 1.00897 * 111.00061 * 80.08212 * 18 17 16 31 31 H 1.08993 * 110.41417 * 280.70611 * 19 18 17 32 32 H 1.09002 * 110.41377 * 158.25977 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2430 2.0166 1.1672 5 8 2.6481 3.1640 1.1671 6 6 1.9995 1.3264 2.4349 7 1 1.6396 0.3082 2.4348 8 6 2.2324 1.9867 3.6477 9 7 2.6674 3.2189 3.6477 10 14 1.9210 1.1061 5.2654 11 1 2.7801 -0.1026 5.3443 12 1 2.2427 2.0160 6.3941 13 1 0.4934 0.7050 5.3438 14 6 2.2625 2.0718 -1.2688 15 1 2.0663 1.4032 -2.1069 16 6 1.3794 3.3325 -1.3711 17 6 2.3720 4.5098 -1.4802 18 7 3.6154 3.9023 -2.0204 19 6 3.7144 2.5935 -1.3245 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 2.8291 3.6762 4.4877 26 1 0.7511 3.2835 -2.2604 27 1 0.7641 3.4373 -0.4776 28 1 1.9901 5.2669 -2.1651 29 1 2.5568 4.9436 -0.4974 30 1 3.5519 3.7768 -3.0195 31 1 4.1092 2.7273 -0.3175 32 1 4.3432 1.9076 -1.8923 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000616571708.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:30 Heat of formation + Delta-G solvation = -29.400856 kcal Electronic energy + Delta-G solvation = -15029.590736 eV Core-core repulsion = 12604.169799 eV Total energy + Delta-G solvation = -2425.420937 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.93927 -36.18755 -34.11583 -32.47661 -29.89675 -28.53664 -27.46342 -25.64149 -22.32934 -21.42891 -20.73185 -18.49666 -16.40944 -15.98058 -15.44077 -14.97698 -14.21155 -13.66341 -13.18055 -12.95737 -12.85744 -12.42723 -12.13041 -11.60148 -11.31080 -11.17838 -11.01406 -10.95759 -10.64030 -10.51460 -10.39098 -10.26508 -10.06715 -9.85338 -8.81918 -8.24465 -7.43970 -7.09355 -6.15613 -4.61456 3.15196 3.20894 3.21901 4.08612 4.47947 4.58192 4.97190 5.39474 5.48801 5.69121 5.73778 5.79494 5.95761 6.06589 6.07232 6.11038 6.22642 6.28643 6.49474 6.61341 6.75867 6.87447 6.93747 7.00628 7.23786 7.46498 7.69820 7.95997 8.19446 8.38966 9.04804 9.47070 10.60856 10.80487 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.034621 B = 0.011512 C = 0.009497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.563222 B = 2431.587516 C = 2947.563825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.124 3.876 3 N -0.638 5.638 4 C 0.558 3.442 5 O -0.563 6.563 6 C -0.544 4.544 7 H 0.069 0.931 8 C 0.089 3.911 9 N -0.766 5.766 10 Si 0.902 3.098 11 H -0.269 1.269 12 H -0.281 1.281 13 H -0.269 1.269 14 C 0.129 3.871 15 H 0.063 0.937 16 C -0.155 4.155 17 C 0.052 3.948 18 N -0.666 5.666 19 C 0.032 3.968 20 H 0.064 0.936 21 H 0.042 0.958 22 H 0.047 0.953 23 H 0.079 0.921 24 H 0.046 0.954 25 H 0.268 0.732 26 H 0.046 0.954 27 H 0.079 0.921 28 H 0.054 0.946 29 H 0.095 0.905 30 H 0.318 0.682 31 H 0.107 0.893 32 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.613 -4.311 -7.262 8.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.001 4.001 3 N -0.375 5.375 4 C 0.363 3.637 5 O -0.445 6.445 6 C -0.581 4.581 7 H 0.087 0.913 8 C -0.131 4.131 9 N -0.395 5.395 10 Si 0.727 3.273 11 H -0.193 1.193 12 H -0.206 1.206 13 H -0.194 1.194 14 C 0.022 3.978 15 H 0.081 0.919 16 C -0.196 4.196 17 C -0.078 4.078 18 N -0.291 5.291 19 C -0.099 4.099 20 H 0.083 0.917 21 H 0.061 0.939 22 H 0.066 0.934 23 H 0.098 0.902 24 H 0.064 0.936 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.097 0.903 28 H 0.072 0.928 29 H 0.113 0.887 30 H 0.132 0.868 31 H 0.125 0.875 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.799 -3.103 -6.736 7.631 hybrid contribution -1.129 -1.204 0.319 1.682 sum -2.928 -4.308 -6.417 8.265 Atomic orbital electron populations 1.22197 0.97923 1.00264 1.02036 1.21167 0.93068 0.84804 1.01021 1.48174 1.71418 1.13058 1.04881 1.18143 0.77609 0.85933 0.81968 1.90586 1.49636 1.18077 1.86171 1.20984 1.47466 1.00263 0.89381 0.91255 1.25689 0.92920 0.94370 1.00097 1.69998 1.32130 1.10075 1.27249 0.86524 0.79425 0.79873 0.81471 1.19345 1.20629 1.19390 1.22001 0.95133 0.93207 0.87444 0.91857 1.23096 0.98920 0.96371 1.01192 1.22896 0.87858 0.95664 1.01349 1.63331 1.37175 1.20951 1.07682 1.23484 0.95772 0.88838 1.01778 0.91739 0.93907 0.93379 0.90231 0.93602 0.92153 0.93518 0.90260 0.92783 0.88665 0.86841 0.87489 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.76 10.24 37.16 0.38 -2.38 16 2 C 0.12 2.28 5.83 -4.04 -0.02 2.25 16 3 N -0.64 -14.01 2.46 -166.18 -0.41 -14.42 16 4 C 0.56 15.11 6.52 -12.99 -0.08 15.02 16 5 O -0.56 -16.85 10.86 5.20 0.06 -16.80 16 6 C -0.54 -14.85 8.74 -35.63 -0.31 -15.16 16 7 H 0.07 1.75 6.00 -52.49 -0.31 1.43 16 8 C 0.09 2.43 5.50 -17.37 -0.10 2.33 16 9 N -0.77 -22.46 11.83 55.55 0.66 -21.80 16 10 Si 0.90 19.95 29.56 -169.99 -5.02 14.92 16 11 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 12 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 13 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 14 C 0.13 2.51 3.53 -66.55 -0.23 2.28 16 15 H 0.06 1.07 7.83 -51.93 -0.41 0.66 16 16 C -0.16 -2.99 6.01 -25.35 -0.15 -3.14 16 17 C 0.05 0.99 7.04 -2.19 -0.02 0.98 16 18 N -0.67 -12.22 7.62 -109.67 -0.84 -13.05 16 19 C 0.03 0.63 6.73 -2.18 -0.01 0.62 16 20 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 21 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.08 1.53 6.09 -51.93 -0.32 1.22 16 24 H 0.05 0.72 7.92 -51.93 -0.41 0.31 16 25 H 0.27 7.22 8.29 -40.82 -0.34 6.89 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.08 1.80 7.21 -51.93 -0.37 1.42 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.10 2.21 7.22 -51.93 -0.37 1.83 16 30 H 0.32 4.82 8.92 -39.29 -0.35 4.47 16 31 H 0.11 2.66 5.95 -51.93 -0.31 2.35 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 258.06 15.07 3.89 3.89 Total: -1.00 -31.03 258.06 -6.75 -37.78 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -4.53 Total: 6.68 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -0.55 Total: 2.81 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: -0.59 Total: -49.27 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: 0.06 Total: -16.80 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -31.03 -6.75 -37.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616571708.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.375 kcal (2) G-P(sol) polarization free energy of solvation -31.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds