Wall clock time and date at job start Mon Mar 30 2020 03:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.52996 * 109.47224 * 239.99706 * 2 1 3 5 5 C 1.53000 * 109.47518 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47233 * 59.99873 * 5 4 2 7 7 C 1.52996 * 109.46972 * 300.00461 * 6 5 4 8 8 H 1.09004 * 109.47552 * 299.99695 * 7 6 5 9 9 C 1.53002 * 109.46969 * 179.97438 * 7 6 5 10 10 H 1.09000 * 109.47312 * 299.99939 * 9 7 6 11 11 O 1.42905 * 109.47079 * 179.97438 * 9 7 6 12 12 C 1.50701 * 109.47097 * 60.00038 * 9 7 6 13 13 H 1.07999 * 119.99742 * 359.97438 * 12 9 7 14 14 C 1.37878 * 120.00001 * 179.97438 * 12 9 7 15 15 N 1.31507 * 120.00096 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 119.99524 * 179.97438 * 14 12 9 17 17 H 1.48494 * 109.47605 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46815 * 120.00460 * 16 14 12 19 19 H 1.48499 * 109.46757 * 239.99935 * 16 14 12 20 20 C 1.53000 * 109.47518 * 59.99713 * 7 6 5 21 21 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 22 22 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 23 23 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47289 * 299.99700 * 3 2 1 26 26 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 27 27 H 1.09004 * 109.47552 * 300.00354 * 4 2 1 28 28 H 1.09001 * 109.46997 * 60.00082 * 4 2 1 29 29 H 1.09002 * 109.47398 * 180.02562 * 5 4 2 30 30 H 1.09000 * 109.46968 * 300.00065 * 5 4 2 31 31 H 1.08996 * 109.47407 * 179.97438 * 6 5 4 32 32 H 1.09000 * 109.46986 * 60.00203 * 6 5 4 33 33 H 0.96691 * 114.00079 * 299.99986 * 11 9 7 34 34 H 0.96997 * 119.99806 * 179.97438 * 15 14 12 35 35 H 1.09000 * 109.46968 * 59.99935 * 20 7 6 36 36 H 1.09002 * 109.47398 * 179.97438 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5699 -0.7219 -1.2489 6 6 4.0795 -1.4434 0.0004 7 6 3.5695 -0.7221 1.2495 8 1 3.9331 0.3054 1.2498 9 6 4.0785 -1.4441 2.4988 10 1 3.7145 -2.4715 2.4984 11 8 3.6026 -0.7700 3.6656 12 6 5.5855 -1.4451 2.4994 13 1 6.1261 -0.9779 1.6895 14 6 6.2741 -2.0424 3.5339 15 7 5.6158 -2.6116 4.5198 16 14 8.1421 -2.0442 3.5341 17 1 8.6380 -1.3446 2.3218 18 1 8.6376 -1.3442 4.7465 19 1 8.6357 -3.4448 3.5348 20 6 2.0395 -0.7215 1.2493 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 3.1300 1.4424 0.0005 25 1 1.6768 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6766 -1.7490 -1.2492 28 1 1.6766 -0.2075 -2.1392 29 1 3.9333 -1.2354 -2.1391 30 1 3.9336 0.3056 -1.2487 31 1 5.1694 -1.4443 0.0003 32 1 3.7158 -2.4710 0.0002 33 1 3.8889 0.1512 3.7319 34 1 6.1002 -3.0321 5.2473 35 1 1.6758 -1.7491 1.2491 36 1 1.6761 -0.2081 2.1395 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685946406.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:18 Heat of formation + Delta-G solvation = -90.931887 kcal Electronic energy + Delta-G solvation = -15170.322831 eV Core-core repulsion = 12845.774051 eV Total energy + Delta-G solvation = -2324.548779 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.19167 -35.55794 -32.64654 -32.03582 -30.35030 -27.07580 -26.62840 -25.58071 -22.89947 -21.19028 -19.55819 -17.99004 -16.76186 -15.04168 -14.54049 -14.52016 -14.13833 -13.92433 -13.38276 -13.06623 -12.61144 -12.37010 -11.94738 -11.69094 -11.52825 -11.32270 -11.06228 -10.99809 -10.91603 -10.52399 -10.43167 -10.34777 -10.02458 -9.87391 -9.47631 -9.42929 -8.71182 -8.49530 -7.92076 -5.93917 -4.10418 3.29349 3.37803 3.40868 4.43573 5.05201 5.08847 5.17374 5.32047 5.54791 5.69133 5.77988 5.87984 5.89540 5.99407 6.02566 6.10861 6.14233 6.22239 6.31320 6.35885 6.38298 6.44619 6.59944 6.67000 6.73451 6.77538 6.95376 7.09411 7.16718 7.22658 7.84343 7.96175 8.29377 8.92835 9.46995 9.66650 11.10331 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.046100 B = 0.008749 C = 0.007984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.226991 B = 3199.435975 C = 3506.042917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.067 4.067 3 C -0.141 4.141 4 C -0.104 4.104 5 C -0.122 4.122 6 C -0.103 4.103 7 C -0.109 4.109 8 H 0.058 0.942 9 C 0.232 3.768 10 H 0.051 0.949 11 O -0.567 6.567 12 C -0.564 4.564 13 H 0.057 0.943 14 C 0.076 3.924 15 N -0.862 5.862 16 Si 0.884 3.116 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.097 4.097 21 H 0.052 0.948 22 H 0.046 0.954 23 H 0.051 0.949 24 H 0.064 0.936 25 H 0.043 0.957 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.343 0.657 34 H 0.258 0.742 35 H 0.052 0.948 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.401 5.105 -9.430 12.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.067 4.067 3 C -0.198 4.198 4 C -0.142 4.142 5 C -0.159 4.159 6 C -0.140 4.140 7 C -0.128 4.128 8 H 0.076 0.924 9 C 0.175 3.825 10 H 0.069 0.931 11 O -0.369 6.369 12 C -0.602 4.602 13 H 0.075 0.925 14 C -0.129 4.129 15 N -0.498 5.498 16 Si 0.712 3.288 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.134 4.134 21 H 0.071 0.929 22 H 0.066 0.934 23 H 0.070 0.930 24 H 0.082 0.918 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.186 0.814 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.677 4.400 -9.154 12.155 hybrid contribution 1.373 0.409 -0.094 1.436 sum -5.304 4.809 -9.247 11.695 Atomic orbital electron populations 1.21857 0.95559 1.01266 1.00947 1.20573 0.94340 0.95576 0.96249 1.21936 1.01868 0.95444 1.00562 1.21556 0.96142 0.99887 0.96566 1.21634 0.95163 1.00699 0.98411 1.21426 1.01150 0.98470 0.92968 1.21886 0.93393 0.99913 0.97569 0.92357 1.19407 0.92196 0.91447 0.79478 0.93086 1.86549 1.76476 1.26650 1.47217 1.21769 0.92371 1.38336 1.07683 0.92472 1.25066 0.97908 0.94479 0.95439 1.70090 1.34868 1.35133 1.09748 0.86693 0.86452 0.77724 0.77964 1.19765 1.21010 1.21005 1.21577 0.96765 0.99425 0.95657 0.92905 0.93442 0.93019 0.91762 0.93749 0.93087 0.92471 0.93152 0.93114 0.92313 0.91194 0.92939 0.81416 0.93223 0.92936 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.47 37.15 0.31 -1.46 16 2 C -0.07 -0.98 0.77 -154.51 -0.12 -1.10 16 3 C -0.14 -1.94 7.78 37.16 0.29 -1.66 16 4 C -0.10 -1.46 4.73 -26.73 -0.13 -1.58 16 5 C -0.12 -1.84 5.65 -26.73 -0.15 -1.99 16 6 C -0.10 -1.91 4.95 -26.73 -0.13 -2.04 16 7 C -0.11 -2.18 1.65 -90.62 -0.15 -2.33 16 8 H 0.06 1.17 6.43 -51.93 -0.33 0.84 16 9 C 0.23 5.85 2.41 -27.88 -0.07 5.78 16 10 H 0.05 1.44 8.14 -51.93 -0.42 1.02 16 11 O -0.57 -14.68 12.06 -35.23 -0.42 -15.10 16 12 C -0.56 -15.35 8.03 -34.44 -0.28 -15.62 16 13 H 0.06 1.52 6.71 -52.49 -0.35 1.17 16 14 C 0.08 2.15 5.40 -17.82 -0.10 2.06 16 15 N -0.86 -25.80 12.84 55.43 0.71 -25.09 16 16 Si 0.88 21.33 29.54 -169.99 -5.02 16.31 16 17 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 C -0.10 -1.72 3.86 -26.73 -0.10 -1.82 16 21 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.95 4.81 -51.93 -0.25 0.70 16 25 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.87 6.43 -51.93 -0.33 0.54 16 31 H 0.07 1.41 6.62 -51.93 -0.34 1.06 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.34 7.91 9.04 45.56 0.41 8.32 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 1.15 7.68 -51.93 -0.40 0.75 16 LS Contribution 275.05 15.07 4.14 4.14 Total: -1.00 -29.48 275.05 -6.59 -36.07 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -5.39 Total: 5.43 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: -0.62 Total: -21.76 kcal Atomic # 7 Polarization: -25.80 SS G_CDS: 0.71 Total: -25.09 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.42 Total: -15.10 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.48 -6.59 -36.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685946406.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.861 kcal (2) G-P(sol) polarization free energy of solvation -29.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds