Wall clock time and date at job start Mon Mar 30 2020 03:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.52996 * 109.47224 * 239.99706 * 2 1 3 5 5 C 1.53000 * 109.47518 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47233 * 59.99873 * 5 4 2 7 7 C 1.52996 * 109.46972 * 300.00461 * 6 5 4 8 8 H 1.09004 * 109.47552 * 299.99695 * 7 6 5 9 9 C 1.53002 * 109.46969 * 179.97438 * 7 6 5 10 10 H 1.09000 * 109.47312 * 299.99939 * 9 7 6 11 11 O 1.42905 * 109.47079 * 179.97438 * 9 7 6 12 12 C 1.50701 * 109.47097 * 60.00038 * 9 7 6 13 13 H 1.07999 * 119.99742 * 359.97438 * 12 9 7 14 14 C 1.37878 * 120.00001 * 179.97438 * 12 9 7 15 15 N 1.31507 * 120.00096 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 119.99524 * 179.97438 * 14 12 9 17 17 H 1.48494 * 109.47605 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46815 * 120.00460 * 16 14 12 19 19 H 1.48499 * 109.46757 * 239.99935 * 16 14 12 20 20 C 1.53000 * 109.47518 * 59.99713 * 7 6 5 21 21 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 22 22 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 23 23 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47289 * 299.99700 * 3 2 1 26 26 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 27 27 H 1.09004 * 109.47552 * 300.00354 * 4 2 1 28 28 H 1.09001 * 109.46997 * 60.00082 * 4 2 1 29 29 H 1.09002 * 109.47398 * 180.02562 * 5 4 2 30 30 H 1.09000 * 109.46968 * 300.00065 * 5 4 2 31 31 H 1.08996 * 109.47407 * 179.97438 * 6 5 4 32 32 H 1.09000 * 109.46986 * 60.00203 * 6 5 4 33 33 H 0.96691 * 114.00079 * 299.99986 * 11 9 7 34 34 H 0.96997 * 119.99806 * 179.97438 * 15 14 12 35 35 H 1.09000 * 109.46968 * 59.99935 * 20 7 6 36 36 H 1.09002 * 109.47398 * 179.97438 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5699 -0.7219 -1.2489 6 6 4.0795 -1.4434 0.0004 7 6 3.5695 -0.7221 1.2495 8 1 3.9331 0.3054 1.2498 9 6 4.0785 -1.4441 2.4988 10 1 3.7145 -2.4715 2.4984 11 8 3.6026 -0.7700 3.6656 12 6 5.5855 -1.4451 2.4994 13 1 6.1261 -0.9779 1.6895 14 6 6.2741 -2.0424 3.5339 15 7 5.6158 -2.6116 4.5198 16 14 8.1421 -2.0442 3.5341 17 1 8.6380 -1.3446 2.3218 18 1 8.6376 -1.3442 4.7465 19 1 8.6357 -3.4448 3.5348 20 6 2.0395 -0.7215 1.2493 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 3.1300 1.4424 0.0005 25 1 1.6768 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6766 -1.7490 -1.2492 28 1 1.6766 -0.2075 -2.1392 29 1 3.9333 -1.2354 -2.1391 30 1 3.9336 0.3056 -1.2487 31 1 5.1694 -1.4443 0.0003 32 1 3.7158 -2.4710 0.0002 33 1 3.8889 0.1512 3.7319 34 1 6.1002 -3.0321 5.2473 35 1 1.6758 -1.7491 1.2491 36 1 1.6761 -0.2081 2.1395 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685946406.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:17 Heat of formation + Delta-G solvation = -109.640002 kcal Electronic energy + Delta-G solvation = -15171.134075 eV Core-core repulsion = 12845.774051 eV Total energy + Delta-G solvation = -2325.360024 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.57388 -37.44020 -34.27806 -33.99598 -31.84803 -28.54063 -28.11712 -26.93871 -24.75516 -22.58603 -21.21435 -19.39593 -18.73626 -16.72118 -16.56385 -16.02566 -15.61696 -15.34195 -14.82722 -14.63858 -14.17350 -13.80929 -13.39908 -13.20053 -12.94374 -12.84724 -12.77887 -12.64988 -12.28695 -12.18294 -11.86718 -11.72238 -11.64902 -11.34891 -11.00634 -10.87473 -10.69390 -10.49403 -9.87006 -8.10055 -6.33815 1.38157 1.39621 1.51474 2.39902 3.15176 3.84819 3.86716 3.96012 4.21279 4.38193 4.44260 4.57459 4.61553 4.67991 4.76429 4.87714 4.91189 4.94486 5.02394 5.12390 5.17988 5.20943 5.25888 5.27746 5.33548 5.45351 5.58296 5.59375 5.62779 5.69377 5.77766 5.95237 6.17653 6.78585 7.37198 7.59372 8.94582 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.046100 B = 0.008749 C = 0.007984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.226991 B = 3199.435975 C = 3506.042917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.065 4.065 3 C -0.139 4.139 4 C -0.102 4.102 5 C -0.114 4.114 6 C -0.101 4.101 7 C -0.096 4.096 8 H 0.061 0.939 9 C 0.230 3.770 10 H 0.009 0.991 11 O -0.583 6.583 12 C -0.570 4.570 13 H 0.062 0.938 14 C 0.020 3.980 15 N -0.905 5.905 16 Si 0.955 3.045 17 H -0.262 1.262 18 H -0.281 1.281 19 H -0.281 1.281 20 C -0.091 4.091 21 H 0.051 0.949 22 H 0.070 0.930 23 H 0.049 0.951 24 H 0.052 0.948 25 H 0.068 0.932 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.039 0.961 33 H 0.354 0.646 34 H 0.259 0.741 35 H 0.036 0.964 36 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.405 6.408 -11.394 14.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.065 4.065 3 C -0.196 4.196 4 C -0.139 4.139 5 C -0.152 4.152 6 C -0.139 4.139 7 C -0.114 4.114 8 H 0.080 0.920 9 C 0.173 3.827 10 H 0.027 0.973 11 O -0.387 6.387 12 C -0.608 4.608 13 H 0.080 0.920 14 C -0.182 4.182 15 N -0.543 5.543 16 Si 0.780 3.220 17 H -0.186 1.186 18 H -0.206 1.206 19 H -0.207 1.207 20 C -0.129 4.129 21 H 0.070 0.930 22 H 0.089 0.911 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.087 0.913 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.199 0.801 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.681 5.716 -11.135 14.188 hybrid contribution 1.346 -0.013 0.551 1.454 sum -5.335 5.703 -10.584 13.154 Atomic orbital electron populations 1.21822 0.93860 1.01595 1.02055 1.20555 0.95715 0.95718 0.94482 1.21914 1.01102 0.94877 1.01727 1.21562 0.95025 1.00091 0.97247 1.21576 0.96146 1.00689 0.96758 1.21376 0.99915 0.98242 0.94344 1.21652 0.95005 0.99205 0.95582 0.92049 1.19329 0.91552 0.90249 0.81599 0.97306 1.86482 1.76593 1.27573 1.48047 1.22124 0.93566 1.37641 1.07506 0.92021 1.25938 1.02961 0.94148 0.95118 1.70235 1.36918 1.36508 1.10665 0.85573 0.80338 0.77782 0.78276 1.18595 1.20635 1.20724 1.21497 0.94959 0.98998 0.97418 0.93014 0.91138 0.93156 0.92902 0.91322 0.93253 0.92771 0.90300 0.91359 0.91523 0.93136 0.94201 0.80146 0.93254 0.94469 0.93293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.47 71.98 0.61 -2.49 16 2 C -0.06 -1.73 0.77 -52.19 -0.04 -1.77 16 3 C -0.14 -3.44 7.78 71.98 0.56 -2.88 16 4 C -0.10 -2.54 4.73 30.59 0.14 -2.39 16 5 C -0.11 -3.18 5.65 30.60 0.17 -3.01 16 6 C -0.10 -3.74 4.95 30.59 0.15 -3.59 16 7 C -0.10 -3.86 1.65 -10.79 -0.02 -3.88 16 8 H 0.06 2.44 6.43 -2.39 -0.02 2.43 16 9 C 0.23 11.99 2.41 29.85 0.07 12.07 16 10 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 11 O -0.58 -31.17 12.06 -148.98 -1.80 -32.96 16 12 C -0.57 -31.59 8.03 25.60 0.21 -31.38 16 13 H 0.06 3.29 6.71 -2.91 -0.02 3.27 16 14 C 0.02 1.12 5.40 84.66 0.46 1.58 16 15 N -0.91 -55.57 12.84 21.45 0.28 -55.30 16 16 Si 0.96 44.16 29.54 68.60 2.03 46.18 16 17 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 18 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 20 C -0.09 -3.24 3.86 30.60 0.12 -3.12 16 21 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 22 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.05 1.42 4.81 -2.38 -0.01 1.41 16 25 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.05 1.39 8.14 -2.39 -0.02 1.38 16 28 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.07 1.68 8.14 -2.39 -0.02 1.67 16 30 H 0.07 1.78 6.43 -2.39 -0.02 1.76 16 31 H 0.05 2.04 6.62 -2.39 -0.02 2.02 16 32 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.35 16.73 9.04 -74.06 -0.67 16.06 16 34 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 35 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.05 1.84 7.68 -2.39 -0.02 1.82 16 Total: -1.00 -64.03 275.05 3.31 -60.72 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: 0.37 Total: 22.23 kcal Atomic # 6 Polarization: -43.30 SS G_CDS: 2.43 Total: -40.87 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: 0.28 Total: -55.30 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -1.80 Total: -32.96 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -64.03 3.31 -60.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685946406.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.921 kcal (2) G-P(sol) polarization free energy of solvation -64.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds