Wall clock time and date at job start Mon Mar 30 2020 03:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47030 * 2 1 4 4 C 1.52996 * 109.46915 * 119.99977 * 2 1 3 5 5 C 1.53003 * 109.46915 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47301 * 299.99916 * 5 4 2 7 7 C 1.53010 * 109.46840 * 59.99886 * 6 5 4 8 8 H 1.09000 * 109.46676 * 60.00308 * 7 6 5 9 9 C 1.52996 * 109.46840 * 179.97438 * 7 6 5 10 10 H 1.08994 * 109.47405 * 59.99971 * 9 7 6 11 11 O 1.42899 * 109.46993 * 180.02562 * 9 7 6 12 12 C 1.50702 * 109.47159 * 299.99938 * 9 7 6 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 9 7 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 9 7 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 9 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 9 17 17 H 1.48501 * 109.47188 * 90.00793 * 16 14 12 18 18 H 1.48501 * 109.47085 * 210.00372 * 16 14 12 19 19 H 1.48498 * 109.47634 * 330.00608 * 16 14 12 20 20 C 1.52994 * 109.47035 * 299.99770 * 7 6 5 21 21 H 1.09001 * 109.47249 * 300.00107 * 1 2 3 22 22 H 1.09004 * 109.47038 * 60.00097 * 1 2 3 23 23 H 1.09000 * 109.47414 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47175 * 179.97438 * 3 2 1 25 25 H 1.09004 * 109.47084 * 300.00401 * 3 2 1 26 26 H 1.09001 * 109.47192 * 59.99858 * 3 2 1 27 27 H 1.09003 * 109.47532 * 59.99910 * 4 2 1 28 28 H 1.09001 * 109.47094 * 300.00011 * 4 2 1 29 29 H 1.09004 * 109.47038 * 179.97438 * 5 4 2 30 30 H 1.09000 * 109.46939 * 60.00579 * 5 4 2 31 31 H 1.09000 * 109.47234 * 300.00536 * 6 5 4 32 32 H 1.08994 * 109.47089 * 179.97438 * 6 5 4 33 33 H 0.96699 * 113.99712 * 60.00257 * 11 9 7 34 34 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 35 35 H 1.08998 * 109.46640 * 179.97438 * 20 7 6 36 36 H 1.08994 * 109.47663 * 300.00253 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5700 -0.7218 1.2489 6 6 4.0795 -1.4434 -0.0003 7 6 3.5694 -0.7221 -1.2496 8 1 3.9332 0.3054 -1.2498 9 6 4.0795 -1.4434 -2.4988 10 1 3.7162 -2.4710 -2.4988 11 8 3.6036 -0.7694 -3.6655 12 6 5.5865 -1.4433 -2.4988 13 1 6.1265 -0.9760 -1.6886 14 6 6.2759 -2.0454 -3.5300 15 7 5.6183 -2.6148 -4.5163 16 14 8.1438 -2.0520 -3.5260 17 1 8.6331 -3.2646 -2.8221 18 1 8.6418 -2.0571 -4.9251 19 1 8.6418 -0.8396 -2.8278 20 6 2.0395 -0.7217 -1.2493 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 3.1299 1.4425 0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 1.6766 -1.7489 1.2493 28 1 1.6766 -0.2074 2.1392 29 1 3.9333 -1.2352 2.1392 30 1 3.9337 0.3057 1.2488 31 1 3.7157 -2.4709 -0.0001 32 1 5.1694 -1.4434 -0.0007 33 1 3.8893 0.1521 -3.7315 34 1 6.1034 -3.0380 -5.2420 35 1 1.6762 -0.2074 -2.1390 36 1 1.6758 -1.7491 -1.2490 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685946407.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:21 Heat of formation + Delta-G solvation = -90.925618 kcal Electronic energy + Delta-G solvation = -15169.849398 eV Core-core repulsion = 12845.300891 eV Total energy + Delta-G solvation = -2324.548507 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.19164 -35.55670 -32.64632 -32.03459 -30.35006 -27.07546 -26.62797 -25.58025 -22.89872 -21.19012 -19.55673 -17.99016 -16.76084 -15.04129 -14.53938 -14.51895 -14.14084 -13.92275 -13.38227 -13.06629 -12.61119 -12.36995 -11.94749 -11.69048 -11.52960 -11.32238 -11.06283 -10.99771 -10.89758 -10.54606 -10.43353 -10.34685 -10.02291 -9.87898 -9.47704 -9.42927 -8.71657 -8.48629 -7.92248 -5.93770 -4.10333 3.30307 3.37611 3.39852 4.43615 5.05169 5.08854 5.17364 5.32090 5.54781 5.69078 5.77939 5.87978 5.89494 5.99470 6.02537 6.10886 6.14216 6.22239 6.31290 6.35900 6.38249 6.44626 6.59980 6.67041 6.73434 6.77501 6.95267 7.09439 7.16684 7.22590 7.84180 7.96269 8.29431 8.92707 9.47047 9.66628 11.10445 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.046086 B = 0.008751 C = 0.007984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.418974 B = 3198.978945 C = 3506.083722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.067 4.067 3 C -0.141 4.141 4 C -0.104 4.104 5 C -0.122 4.122 6 C -0.103 4.103 7 C -0.109 4.109 8 H 0.058 0.942 9 C 0.232 3.768 10 H 0.051 0.949 11 O -0.567 6.567 12 C -0.564 4.564 13 H 0.056 0.944 14 C 0.076 3.924 15 N -0.862 5.862 16 Si 0.885 3.115 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.097 4.097 21 H 0.047 0.953 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.063 0.937 25 H 0.050 0.950 26 H 0.043 0.957 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.343 0.657 34 H 0.258 0.742 35 H 0.061 0.939 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.403 5.098 9.414 12.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.067 4.067 3 C -0.198 4.198 4 C -0.142 4.142 5 C -0.159 4.159 6 C -0.140 4.140 7 C -0.128 4.128 8 H 0.076 0.924 9 C 0.175 3.825 10 H 0.069 0.931 11 O -0.369 6.369 12 C -0.602 4.602 13 H 0.075 0.925 14 C -0.129 4.129 15 N -0.498 5.498 16 Si 0.712 3.288 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.134 4.134 21 H 0.066 0.934 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.082 0.918 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.186 0.814 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.680 4.395 9.131 12.137 hybrid contribution 1.376 0.401 0.116 1.438 sum -5.304 4.796 9.248 11.690 Atomic orbital electron populations 1.21860 0.95559 1.01266 1.00947 1.20577 0.94339 0.95576 0.96250 1.21936 1.01867 0.95442 1.00563 1.21556 0.96141 0.99887 0.96567 1.21634 0.95166 1.00697 0.98409 1.21429 1.01143 0.98473 0.92974 1.21887 0.93393 0.99921 0.97569 0.92356 1.19396 0.92167 0.91450 0.79481 0.93091 1.86549 1.76512 1.26627 1.47210 1.21732 0.92369 1.38283 1.07833 0.92534 1.25067 0.97911 0.94484 0.95424 1.70085 1.34968 1.34981 1.09811 0.86744 0.86399 0.78422 0.77212 1.20659 1.21236 1.19904 1.21573 0.96764 0.99419 0.95659 0.93436 0.92911 0.93019 0.91763 0.93081 0.93755 0.92471 0.93152 0.93116 0.92312 0.92934 0.91199 0.81410 0.93166 0.92006 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.47 37.16 0.31 -1.46 16 2 C -0.07 -0.98 0.77 -154.51 -0.12 -1.10 16 3 C -0.14 -1.94 7.78 37.16 0.29 -1.66 16 4 C -0.10 -1.46 4.73 -26.73 -0.13 -1.58 16 5 C -0.12 -1.84 5.65 -26.73 -0.15 -1.99 16 6 C -0.10 -1.91 4.95 -26.73 -0.13 -2.04 16 7 C -0.11 -2.18 1.65 -90.62 -0.15 -2.33 16 8 H 0.06 1.17 6.43 -51.93 -0.33 0.84 16 9 C 0.23 5.86 2.41 -27.88 -0.07 5.79 16 10 H 0.05 1.44 8.14 -51.93 -0.42 1.02 16 11 O -0.57 -14.68 12.07 -35.23 -0.43 -15.10 16 12 C -0.56 -15.36 8.03 -34.44 -0.28 -15.64 16 13 H 0.06 1.50 6.71 -52.49 -0.35 1.15 16 14 C 0.08 2.16 5.40 -17.82 -0.10 2.06 16 15 N -0.86 -25.81 12.84 55.43 0.71 -25.10 16 16 Si 0.88 21.35 29.54 -169.99 -5.02 16.32 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 20 C -0.10 -1.72 3.87 -26.73 -0.10 -1.82 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.95 4.81 -51.93 -0.25 0.70 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.87 6.43 -51.93 -0.33 0.54 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 1.40 6.62 -51.93 -0.34 1.06 16 33 H 0.34 7.91 9.04 45.56 0.41 8.32 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.06 1.15 7.68 -51.93 -0.40 0.75 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 275.06 15.07 4.15 4.15 Total: -1.00 -29.46 275.06 -6.59 -36.05 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -5.39 Total: 5.45 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: -0.62 Total: -21.76 kcal Atomic # 7 Polarization: -25.81 SS G_CDS: 0.71 Total: -25.10 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.43 Total: -15.10 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.46 -6.59 -36.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685946407.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.876 kcal (2) G-P(sol) polarization free energy of solvation -29.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds