Wall clock time and date at job start Mon Mar 30 2020 03:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47030 * 2 1 4 4 C 1.52996 * 109.46915 * 119.99977 * 2 1 3 5 5 C 1.53003 * 109.46915 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47301 * 299.99916 * 5 4 2 7 7 C 1.53010 * 109.46840 * 59.99886 * 6 5 4 8 8 H 1.09000 * 109.46676 * 60.00308 * 7 6 5 9 9 C 1.52996 * 109.46840 * 179.97438 * 7 6 5 10 10 H 1.08994 * 109.47405 * 59.99971 * 9 7 6 11 11 O 1.42899 * 109.46993 * 180.02562 * 9 7 6 12 12 C 1.50702 * 109.47159 * 299.99938 * 9 7 6 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 9 7 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 9 7 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 9 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 9 17 17 H 1.48501 * 109.47188 * 90.00793 * 16 14 12 18 18 H 1.48501 * 109.47085 * 210.00372 * 16 14 12 19 19 H 1.48498 * 109.47634 * 330.00608 * 16 14 12 20 20 C 1.52994 * 109.47035 * 299.99770 * 7 6 5 21 21 H 1.09001 * 109.47249 * 300.00107 * 1 2 3 22 22 H 1.09004 * 109.47038 * 60.00097 * 1 2 3 23 23 H 1.09000 * 109.47414 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47175 * 179.97438 * 3 2 1 25 25 H 1.09004 * 109.47084 * 300.00401 * 3 2 1 26 26 H 1.09001 * 109.47192 * 59.99858 * 3 2 1 27 27 H 1.09003 * 109.47532 * 59.99910 * 4 2 1 28 28 H 1.09001 * 109.47094 * 300.00011 * 4 2 1 29 29 H 1.09004 * 109.47038 * 179.97438 * 5 4 2 30 30 H 1.09000 * 109.46939 * 60.00579 * 5 4 2 31 31 H 1.09000 * 109.47234 * 300.00536 * 6 5 4 32 32 H 1.08994 * 109.47089 * 179.97438 * 6 5 4 33 33 H 0.96699 * 113.99712 * 60.00257 * 11 9 7 34 34 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 35 35 H 1.08998 * 109.46640 * 179.97438 * 20 7 6 36 36 H 1.08994 * 109.47663 * 300.00253 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5700 -0.7218 1.2489 6 6 4.0795 -1.4434 -0.0003 7 6 3.5694 -0.7221 -1.2496 8 1 3.9332 0.3054 -1.2498 9 6 4.0795 -1.4434 -2.4988 10 1 3.7162 -2.4710 -2.4988 11 8 3.6036 -0.7694 -3.6655 12 6 5.5865 -1.4433 -2.4988 13 1 6.1265 -0.9760 -1.6886 14 6 6.2759 -2.0454 -3.5300 15 7 5.6183 -2.6148 -4.5163 16 14 8.1438 -2.0520 -3.5260 17 1 8.6331 -3.2646 -2.8221 18 1 8.6418 -2.0571 -4.9251 19 1 8.6418 -0.8396 -2.8278 20 6 2.0395 -0.7217 -1.2493 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 3.1299 1.4425 0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 1.6766 -1.7489 1.2493 28 1 1.6766 -0.2074 2.1392 29 1 3.9333 -1.2352 2.1392 30 1 3.9337 0.3057 1.2488 31 1 3.7157 -2.4709 -0.0001 32 1 5.1694 -1.4434 -0.0007 33 1 3.8893 0.1521 -3.7315 34 1 6.1034 -3.0380 -5.2420 35 1 1.6762 -0.2074 -2.1390 36 1 1.6758 -1.7491 -1.2490 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685946407.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:21 Heat of formation + Delta-G solvation = -109.618570 kcal Electronic energy + Delta-G solvation = -15170.659986 eV Core-core repulsion = 12845.300891 eV Total energy + Delta-G solvation = -2325.359095 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.57366 -37.43907 -34.27790 -33.99454 -31.84764 -28.53926 -28.11727 -26.93826 -24.75444 -22.58541 -21.21310 -19.39593 -18.73468 -16.72083 -16.56055 -16.02574 -15.61851 -15.34093 -14.82627 -14.63920 -14.17295 -13.80902 -13.39698 -13.19559 -12.96136 -12.81623 -12.77813 -12.64967 -12.29037 -12.20610 -11.86661 -11.72307 -11.64851 -11.35092 -11.01054 -10.87328 -10.68469 -10.49343 -9.87109 -8.09933 -6.33760 1.39295 1.39617 1.50351 2.39990 3.15228 3.84828 3.86694 3.96019 4.21325 4.38217 4.44294 4.57445 4.61555 4.68010 4.76459 4.87728 4.91125 4.94530 5.02397 5.12384 5.17965 5.21011 5.25888 5.27734 5.33521 5.45252 5.58260 5.59338 5.62662 5.69390 5.77664 5.95280 6.17655 6.78443 7.37218 7.59385 8.94511 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.046086 B = 0.008751 C = 0.007984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.418974 B = 3198.978945 C = 3506.083722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.065 4.065 3 C -0.139 4.139 4 C -0.102 4.102 5 C -0.114 4.114 6 C -0.101 4.101 7 C -0.096 4.096 8 H 0.061 0.939 9 C 0.230 3.770 10 H 0.009 0.991 11 O -0.583 6.583 12 C -0.571 4.571 13 H 0.062 0.938 14 C 0.020 3.980 15 N -0.905 5.905 16 Si 0.955 3.045 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.263 1.263 20 C -0.091 4.091 21 H 0.070 0.930 22 H 0.051 0.949 23 H 0.049 0.951 24 H 0.052 0.948 25 H 0.048 0.952 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.039 0.961 32 H 0.050 0.950 33 H 0.354 0.646 34 H 0.259 0.741 35 H 0.048 0.952 36 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.399 6.405 11.393 14.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.065 4.065 3 C -0.196 4.196 4 C -0.139 4.139 5 C -0.152 4.152 6 C -0.139 4.139 7 C -0.114 4.114 8 H 0.079 0.921 9 C 0.173 3.827 10 H 0.027 0.973 11 O -0.387 6.387 12 C -0.609 4.609 13 H 0.080 0.920 14 C -0.182 4.182 15 N -0.543 5.543 16 Si 0.780 3.220 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.187 1.187 20 C -0.129 4.129 21 H 0.089 0.911 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.199 0.801 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.675 5.715 11.129 14.180 hybrid contribution 1.346 -0.022 -0.532 1.447 sum -5.330 5.692 10.597 13.157 Atomic orbital electron populations 1.21825 0.93861 1.01593 1.02054 1.20559 0.95714 0.95716 0.94484 1.21913 1.01103 0.94876 1.01727 1.21562 0.95032 1.00088 0.97246 1.21575 0.96142 1.00691 0.96758 1.21380 0.99934 0.98234 0.94342 1.21652 0.95002 0.99208 0.95585 0.92056 1.19320 0.91536 0.90245 0.81604 0.97323 1.86482 1.76630 1.27550 1.48040 1.22097 0.93567 1.37592 1.07665 0.92020 1.25942 1.02973 0.94148 0.95097 1.70235 1.36992 1.36368 1.10723 0.85624 0.80289 0.78845 0.77222 1.20059 1.21112 1.18715 1.21494 0.94961 0.98992 0.97422 0.91131 0.93021 0.93158 0.92901 0.93249 0.91328 0.92776 0.90301 0.91356 0.91517 0.94209 0.93104 0.80140 0.93252 0.93295 0.94464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.47 71.98 0.61 -2.49 16 2 C -0.06 -1.73 0.77 -52.18 -0.04 -1.77 16 3 C -0.14 -3.44 7.78 71.98 0.56 -2.88 16 4 C -0.10 -2.54 4.73 30.59 0.14 -2.39 16 5 C -0.11 -3.18 5.65 30.59 0.17 -3.00 16 6 C -0.10 -3.75 4.95 30.60 0.15 -3.60 16 7 C -0.10 -3.86 1.65 -10.79 -0.02 -3.88 16 8 H 0.06 2.44 6.43 -2.39 -0.02 2.42 16 9 C 0.23 12.01 2.41 29.85 0.07 12.08 16 10 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 11 O -0.58 -31.18 12.07 -148.98 -1.80 -32.97 16 12 C -0.57 -31.63 8.03 25.60 0.21 -31.43 16 13 H 0.06 3.29 6.71 -2.91 -0.02 3.27 16 14 C 0.02 1.13 5.40 84.66 0.46 1.58 16 15 N -0.91 -55.61 12.84 21.45 0.28 -55.33 16 16 Si 0.96 44.15 29.54 68.60 2.03 46.17 16 17 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 18 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 19 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 20 C -0.09 -3.24 3.87 30.59 0.12 -3.12 16 21 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 22 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 23 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.05 1.42 4.81 -2.39 -0.01 1.41 16 25 H 0.05 1.22 8.14 -2.38 -0.02 1.21 16 26 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 30 H 0.07 1.78 6.43 -2.39 -0.02 1.76 16 31 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.05 2.04 6.62 -2.39 -0.02 2.03 16 33 H 0.35 16.73 9.04 -74.06 -0.67 16.06 16 34 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 35 H 0.05 1.84 7.68 -2.39 -0.02 1.82 16 36 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -64.00 275.06 3.31 -60.69 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 0.37 Total: 22.33 kcal Atomic # 6 Polarization: -43.33 SS G_CDS: 2.43 Total: -40.89 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: 0.28 Total: -55.33 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -1.80 Total: -32.97 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -64.00 3.31 -60.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685946407.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.924 kcal (2) G-P(sol) polarization free energy of solvation -64.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds