Wall clock time and date at job start Mon Mar 30 2020 02:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36935 * 119.99733 * 2 1 4 4 H 1.08003 * 119.99901 * 160.75642 * 3 2 1 5 5 C 1.38813 * 120.00293 * 340.75538 * 3 2 1 6 6 N 1.31614 * 119.99679 * 346.71026 * 5 3 2 7 7 Si 1.86801 * 120.00208 * 166.71386 * 5 3 2 8 8 H 1.48503 * 109.47040 * 179.97438 * 7 5 3 9 9 H 1.48499 * 109.46740 * 299.99893 * 7 5 3 10 10 H 1.48501 * 109.46994 * 59.99783 * 7 5 3 11 11 C 1.46498 * 120.00165 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47002 * 269.99695 * 11 2 1 13 13 H 1.08993 * 110.85902 * 305.69746 * 12 11 2 14 14 C 1.54625 * 110.96877 * 69.49414 * 12 11 2 15 15 C 1.51280 * 104.19815 * 142.91470 * 14 12 11 16 16 O 1.21283 * 124.94330 * 163.70677 * 15 14 12 17 17 N 1.34414 * 110.11329 * 343.74628 * 15 14 12 18 18 C 1.46510 * 124.34786 * 179.58907 * 17 15 14 19 19 C 1.46817 * 111.32034 * 359.62421 * 17 15 14 20 20 H 1.09000 * 109.47591 * 84.82451 * 1 2 3 21 21 H 1.09002 * 109.47462 * 204.82740 * 1 2 3 22 22 H 1.09000 * 109.47327 * 324.82493 * 1 2 3 23 23 H 0.97005 * 119.99897 * 180.02562 * 6 5 3 24 24 H 1.09001 * 109.46876 * 29.99725 * 11 2 1 25 25 H 1.09002 * 109.46974 * 149.99479 * 11 2 1 26 26 H 1.09008 * 110.48279 * 261.59043 * 14 12 11 27 27 H 1.09000 * 110.49361 * 24.09993 * 14 12 11 28 28 H 1.08995 * 109.47231 * 359.97013 * 18 17 15 29 29 H 1.08990 * 109.47039 * 119.97584 * 18 17 15 30 30 H 1.08998 * 109.46729 * 239.97247 * 18 17 15 31 31 H 1.09004 * 110.23849 * 257.98926 * 19 17 15 32 32 H 1.08997 * 110.28790 * 135.96595 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1843 1.2121 0.3083 5 6 1.5137 2.3545 -0.3962 6 7 0.3532 2.2951 -1.0143 7 14 2.3050 4.0113 -0.0524 8 1 1.4320 5.0943 -0.5721 9 1 2.4848 4.1795 1.4121 10 1 3.6277 4.0770 -0.7242 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7109 1.4417 13 1 2.9534 -0.9244 2.0060 14 6 1.1352 -2.1342 2.1319 15 6 1.5321 -3.3063 3.0021 16 8 0.8666 -3.7522 3.9127 17 7 2.7301 -3.7811 2.6197 18 6 3.4139 -4.9092 3.2570 19 6 3.2660 -3.0236 1.4818 20 1 -0.3634 0.0927 -1.0234 21 1 -0.3634 -0.9327 0.4315 22 1 -0.3634 0.8400 0.5920 23 1 -0.0910 3.1117 -1.2915 24 1 1.6083 -2.0281 -0.5147 25 1 3.1498 -1.1381 -0.5144 26 1 0.7460 -1.3198 2.7432 27 1 0.3970 -2.4397 1.3904 28 1 2.8023 -5.2897 4.0749 29 1 3.5721 -5.6995 2.5234 30 1 4.3762 -4.5774 3.6468 31 1 3.1254 -3.5829 0.5568 32 1 4.3232 -2.8077 1.6359 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687183724.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:02 Heat of formation + Delta-G solvation = -29.823349 kcal Electronic energy + Delta-G solvation = -14423.595620 eV Core-core repulsion = 11998.156363 eV Total energy + Delta-G solvation = -2425.439258 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.38051 -38.19508 -36.90905 -34.32275 -32.45451 -29.42749 -27.95350 -27.76021 -26.22378 -23.17588 -21.47287 -20.53577 -18.61068 -17.75182 -17.25420 -16.78178 -16.30981 -15.47191 -15.39221 -14.72010 -14.62299 -14.40263 -14.09078 -13.31392 -13.21101 -13.15958 -12.96499 -12.74151 -12.49820 -12.42493 -11.95861 -11.90029 -11.73919 -11.58566 -10.84757 -10.55478 -9.68635 -8.75741 -7.77181 -5.22451 1.49431 1.51627 1.52185 1.57841 2.12234 2.55239 3.34800 3.49524 3.54408 3.85298 4.07334 4.21633 4.43067 4.54086 4.65568 4.74073 4.77308 4.86617 4.87361 4.97695 5.02829 5.19562 5.36101 5.50310 5.60308 5.68303 5.79743 6.06492 6.37096 7.13173 7.20813 7.94654 8.36199 9.26032 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.050810 B = 0.007337 C = 0.007068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.936498 B = 3815.275431 C = 3960.590770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.618 5.618 3 C -0.256 4.256 4 H 0.079 0.921 5 C -0.059 4.059 6 N -0.943 5.943 7 Si 0.964 3.036 8 H -0.299 1.299 9 H -0.282 1.282 10 H -0.273 1.273 11 C 0.161 3.839 12 C -0.109 4.109 13 H 0.075 0.925 14 C -0.137 4.137 15 C 0.511 3.489 16 O -0.589 6.589 17 N -0.621 5.621 18 C 0.088 3.912 19 C 0.114 3.886 20 H 0.000 1.000 21 H 0.033 0.967 22 H 0.013 0.987 23 H 0.245 0.755 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.104 0.896 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.839 -11.551 3.688 14.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.340 5.340 3 C -0.386 4.386 4 H 0.096 0.904 5 C -0.253 4.253 6 N -0.591 5.591 7 Si 0.793 3.207 8 H -0.226 1.226 9 H -0.209 1.209 10 H -0.199 1.199 11 C 0.035 3.965 12 C -0.131 4.131 13 H 0.093 0.907 14 C -0.177 4.177 15 C 0.300 3.700 16 O -0.470 6.470 17 N -0.353 5.353 18 C -0.053 4.053 19 C -0.008 4.008 20 H 0.018 0.982 21 H 0.051 0.949 22 H 0.032 0.968 23 H 0.055 0.945 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.099 0.901 27 H 0.122 0.878 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 7.471 -11.734 4.107 14.504 hybrid contribution -0.109 1.254 0.148 1.268 sum 7.362 -10.480 4.255 13.496 Atomic orbital electron populations 1.20588 0.82993 0.95894 0.97351 1.44122 1.02014 1.01819 1.86083 1.19571 0.96575 0.86084 1.36368 0.90366 1.25695 0.98349 1.01548 0.99697 1.70254 1.18535 1.26798 1.43470 0.85375 0.77665 0.79872 0.77748 1.22594 1.20871 1.19883 1.20864 0.96513 0.86810 0.92343 1.22764 0.93946 0.96456 0.99893 0.90675 1.22296 1.00187 0.95986 0.99276 1.21321 0.81232 0.84503 0.82946 1.90639 1.57812 1.65443 1.33145 1.48381 1.19666 1.33432 1.33868 1.21747 0.97462 0.87725 0.98377 1.22274 0.99149 0.90763 0.88623 0.98194 0.94903 0.96782 0.94548 0.92501 0.91960 0.90133 0.87828 0.91704 0.89722 0.90078 0.88891 0.88056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.49 8.65 127.77 1.11 9.60 16 2 N -0.62 -28.87 2.87 -726.95 -2.09 -30.96 16 3 C -0.26 -13.34 9.69 84.03 0.81 -12.53 16 4 H 0.08 3.86 7.86 -2.91 -0.02 3.84 16 5 C -0.06 -3.22 5.11 84.86 0.43 -2.78 16 6 N -0.94 -55.40 10.50 21.65 0.23 -55.17 16 7 Si 0.96 44.39 29.57 68.60 2.03 46.41 16 8 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 9 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 11 C 0.16 5.53 5.00 86.38 0.43 5.96 16 12 C -0.11 -3.18 3.38 -9.74 -0.03 -3.21 16 13 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 14 C -0.14 -4.38 5.41 30.59 0.17 -4.22 16 15 C 0.51 16.68 8.02 87.90 0.71 17.39 16 16 O -0.59 -23.66 17.35 -3.04 -0.05 -23.71 16 17 N -0.62 -15.35 3.33 -842.76 -2.81 -18.16 16 18 C 0.09 1.60 11.14 127.77 1.42 3.02 16 19 C 0.11 2.40 6.92 86.82 0.60 3.00 16 20 H 0.00 -0.01 7.43 -2.39 -0.02 -0.03 16 21 H 0.03 1.32 5.96 -2.39 -0.01 1.31 16 22 H 0.01 0.73 7.09 -2.39 -0.02 0.71 16 23 H 0.25 14.16 8.31 -92.70 -0.77 13.39 16 24 H 0.06 1.79 7.94 -2.39 -0.02 1.77 16 25 H 0.06 2.05 8.04 -2.39 -0.02 2.03 16 26 H 0.08 2.87 8.14 -2.38 -0.02 2.85 16 27 H 0.10 3.24 6.47 -2.39 -0.02 3.22 16 28 H 0.06 1.39 7.53 -2.39 -0.02 1.37 16 29 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.09 1.63 7.89 -2.39 -0.02 1.61 16 32 H 0.10 1.67 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -67.71 263.53 4.04 -63.66 By element: Atomic # 1 Polarization: 0.60 SS G_CDS: 1.09 Total: 1.69 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: 5.65 Total: 16.22 kcal Atomic # 7 Polarization: -99.61 SS G_CDS: -4.67 Total: -104.28 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.05 Total: -23.71 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -67.71 4.04 -63.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687183724.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.840 kcal (2) G-P(sol) polarization free energy of solvation -67.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds