Wall clock time and date at job start Mon Mar 30 2020 02:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36943 * 120.00004 * 2 1 4 4 H 1.07992 * 119.99915 * 202.41761 * 3 2 1 5 5 C 1.38811 * 119.99688 * 22.41725 * 3 2 1 6 6 N 1.31620 * 120.00266 * 11.29789 * 5 3 2 7 7 Si 1.86803 * 119.99819 * 191.30003 * 5 3 2 8 8 H 1.48497 * 109.47429 * 59.99534 * 7 5 3 9 9 H 1.48501 * 109.47357 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.46857 * 299.99779 * 7 5 3 11 11 C 1.46494 * 120.00233 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47516 * 270.00105 * 11 2 1 13 13 H 1.09002 * 110.88270 * 51.19231 * 12 11 2 14 14 C 1.54624 * 110.96971 * 287.37966 * 12 11 2 15 15 C 1.51284 * 104.19397 * 217.07986 * 14 12 11 16 16 O 1.21280 * 124.94117 * 196.22772 * 15 14 12 17 17 N 1.34416 * 110.11615 * 16.25279 * 15 14 12 18 18 C 1.46501 * 124.35148 * 180.42372 * 17 15 14 19 19 C 1.46761 * 111.30236 * 0.40742 * 17 15 14 20 20 H 1.09004 * 109.46742 * 274.20999 * 1 2 3 21 21 H 1.08991 * 109.47176 * 34.20884 * 1 2 3 22 22 H 1.09001 * 109.46547 * 154.21357 * 1 2 3 23 23 H 0.97002 * 119.99657 * 180.02562 * 6 5 3 24 24 H 1.09005 * 109.47376 * 149.99794 * 11 2 1 25 25 H 1.09005 * 109.47102 * 30.00683 * 11 2 1 26 26 H 1.09003 * 110.48640 * 98.40766 * 14 12 11 27 27 H 1.09000 * 110.60323 * 335.81468 * 14 12 11 28 28 H 1.08994 * 109.47605 * 269.98402 * 18 17 15 29 29 H 1.09007 * 109.46762 * 29.97868 * 18 17 15 30 30 H 1.09001 * 109.47242 * 149.97689 * 18 17 15 31 31 H 1.08999 * 110.24579 * 101.98088 * 19 17 15 32 32 H 1.08996 * 110.24649 * 223.98472 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1860 0.0000 4 1 3.1685 1.2213 -0.3567 5 6 1.5343 2.3426 0.4584 6 7 0.3849 2.2684 1.0954 7 14 2.3375 4.0046 0.1714 8 1 2.4919 4.2344 -1.2875 9 1 1.4864 5.0730 0.7540 10 1 3.6731 4.0275 0.8202 11 6 2.1976 -1.2686 0.0006 12 6 2.4526 -1.7098 1.4432 13 1 1.5292 -1.6974 2.0223 14 6 3.5348 -0.8281 2.1083 15 6 4.3161 -1.7906 2.9754 16 8 5.0671 -1.4662 3.8707 17 7 4.0571 -3.0577 2.6089 18 6 4.6415 -4.2391 3.2483 19 6 3.1133 -3.1055 1.4860 20 1 -0.3633 0.0754 1.0250 21 1 -0.3633 0.8498 -0.5777 22 1 -0.3632 -0.9254 -0.4471 23 1 -0.0453 3.0768 1.4154 24 1 3.1500 -1.1385 -0.5134 25 1 1.6085 -2.0285 -0.5131 26 1 3.0727 -0.0530 2.7197 27 1 4.1830 -0.3820 1.3540 28 1 5.5721 -4.5016 2.7454 29 1 4.8442 -4.0217 4.2971 30 1 3.9430 -5.0730 3.1786 31 1 3.6449 -3.2999 0.5545 32 1 2.3601 -3.8742 1.6588 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687183725.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:05 Heat of formation + Delta-G solvation = -10.512700 kcal Electronic energy + Delta-G solvation = -14548.372130 eV Core-core repulsion = 12123.770245 eV Total energy + Delta-G solvation = -2424.601885 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.95843 -36.55551 -35.26339 -32.70507 -30.76288 -27.74529 -26.78620 -25.80052 -24.72110 -21.54875 -19.81847 -19.13255 -16.94656 -16.26287 -15.82569 -14.96383 -14.74539 -13.84970 -13.64202 -13.29660 -12.99013 -12.79058 -12.74282 -12.16728 -12.06226 -11.37979 -11.28292 -10.94060 -10.74019 -10.47450 -10.40464 -10.19529 -10.00756 -9.76840 -9.26726 -8.53929 -8.47756 -6.78332 -5.72799 -3.18992 3.00176 3.32157 3.40764 3.46162 3.46808 4.50202 4.86419 4.94710 5.24242 5.37790 5.46144 5.51080 5.59183 5.66556 5.73472 5.87589 6.04496 6.29349 6.40085 6.52595 6.73241 6.75783 6.80284 6.92126 7.37989 7.39364 7.72266 7.80874 8.39219 8.55205 9.23464 9.86259 10.34544 11.32149 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.038167 B = 0.009060 C = 0.007867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.438794 B = 3089.908878 C = 3558.405939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.600 5.600 3 C -0.254 4.254 4 H 0.068 0.932 5 C 0.004 3.996 6 N -0.908 5.908 7 Si 0.901 3.099 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.282 1.282 11 C 0.163 3.837 12 C -0.117 4.117 13 H 0.083 0.917 14 C -0.127 4.127 15 C 0.514 3.486 16 O -0.548 6.548 17 N -0.630 5.630 18 C 0.097 3.903 19 C 0.106 3.894 20 H 0.028 0.972 21 H 0.045 0.955 22 H -0.004 1.004 23 H 0.253 0.747 24 H 0.048 0.952 25 H 0.043 0.957 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.136 -11.308 -0.617 11.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.322 5.322 3 C -0.384 4.384 4 H 0.086 0.914 5 C -0.194 4.194 6 N -0.552 5.552 7 Si 0.731 3.269 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.208 1.208 11 C 0.034 3.966 12 C -0.139 4.139 13 H 0.101 0.899 14 C -0.167 4.167 15 C 0.303 3.697 16 O -0.426 6.426 17 N -0.365 5.365 18 C -0.045 4.045 19 C -0.017 4.017 20 H 0.046 0.954 21 H 0.063 0.937 22 H 0.015 0.985 23 H 0.063 0.937 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.122 0.878 27 H 0.121 0.879 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.427 -11.048 -0.062 11.567 hybrid contribution 0.338 0.854 0.037 0.919 sum 3.765 -10.194 -0.025 10.867 Atomic orbital electron populations 1.20812 0.82465 0.95593 0.99288 1.43950 1.01911 1.00578 1.85728 1.19117 0.97971 0.85340 1.35960 0.91431 1.25004 0.97628 0.98462 0.98342 1.70045 1.17804 1.27215 1.40177 0.86383 0.78696 0.83930 0.77855 1.21114 1.21661 1.20816 1.20832 0.96161 0.88507 0.91075 1.23026 0.97672 0.90886 1.02330 0.89870 1.22202 0.97529 0.97470 0.99521 1.21525 0.80998 0.83942 0.83189 1.90650 1.38663 1.81077 1.32179 1.48282 1.46757 1.06407 1.35083 1.21452 0.97790 0.87010 0.98255 1.22255 0.91306 0.99647 0.88538 0.95382 0.93661 0.98518 0.93694 0.93387 0.93872 0.87820 0.87904 0.93129 0.91174 0.91473 0.91442 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.83 9.01 59.85 0.54 4.37 16 2 N -0.60 -14.11 2.91 -181.12 -0.53 -14.64 16 3 C -0.25 -6.63 8.99 -15.06 -0.14 -6.77 16 4 H 0.07 1.73 7.84 -52.49 -0.41 1.31 16 5 C 0.00 0.11 5.13 -17.43 -0.09 0.02 16 6 N -0.91 -25.79 10.59 55.49 0.59 -25.20 16 7 Si 0.90 21.63 29.57 -169.99 -5.03 16.61 16 8 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 9 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 C 0.16 2.98 5.08 -4.05 -0.02 2.96 16 12 C -0.12 -1.98 3.37 -88.99 -0.30 -2.28 16 13 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 14 C -0.13 -2.42 5.71 -26.74 -0.15 -2.58 16 15 C 0.51 9.69 8.02 -10.86 -0.09 9.60 16 16 O -0.55 -12.13 17.59 5.56 0.10 -12.03 16 17 N -0.63 -9.53 3.33 -180.29 -0.60 -10.13 16 18 C 0.10 1.14 10.96 59.85 0.66 1.80 16 19 C 0.11 1.41 6.91 -3.12 -0.02 1.39 16 20 H 0.03 0.71 7.42 -51.93 -0.39 0.33 16 21 H 0.04 1.16 7.19 -51.93 -0.37 0.78 16 22 H 0.00 -0.07 7.84 -51.93 -0.41 -0.48 16 23 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 24 H 0.05 0.86 7.83 -51.93 -0.41 0.45 16 25 H 0.04 0.70 7.86 -51.93 -0.41 0.29 16 26 H 0.10 2.25 8.14 -51.93 -0.42 1.83 16 27 H 0.10 1.99 7.76 -51.93 -0.40 1.59 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.88 7.93 -51.93 -0.41 0.47 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.81 7.89 -51.93 -0.41 0.40 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 267.08 15.07 4.02 4.02 Total: -1.00 -30.83 267.08 -5.92 -36.75 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: -4.87 Total: -3.90 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: 0.39 Total: 8.51 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: -0.54 Total: -49.97 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.10 Total: -12.03 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.83 -5.92 -36.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687183725.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.241 kcal (2) G-P(sol) polarization free energy of solvation -30.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds