Wall clock time and date at job start Mon Mar 30 2020 02:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36943 * 120.00004 * 2 1 4 4 H 1.07992 * 119.99915 * 202.41761 * 3 2 1 5 5 C 1.38811 * 119.99688 * 22.41725 * 3 2 1 6 6 N 1.31620 * 120.00266 * 11.29789 * 5 3 2 7 7 Si 1.86803 * 119.99819 * 191.30003 * 5 3 2 8 8 H 1.48497 * 109.47429 * 59.99534 * 7 5 3 9 9 H 1.48501 * 109.47357 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.46857 * 299.99779 * 7 5 3 11 11 C 1.46494 * 120.00233 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47516 * 270.00105 * 11 2 1 13 13 H 1.09002 * 110.88270 * 51.19231 * 12 11 2 14 14 C 1.54624 * 110.96971 * 287.37966 * 12 11 2 15 15 C 1.51284 * 104.19397 * 217.07986 * 14 12 11 16 16 O 1.21280 * 124.94117 * 196.22772 * 15 14 12 17 17 N 1.34416 * 110.11615 * 16.25279 * 15 14 12 18 18 C 1.46501 * 124.35148 * 180.42372 * 17 15 14 19 19 C 1.46761 * 111.30236 * 0.40742 * 17 15 14 20 20 H 1.09004 * 109.46742 * 274.20999 * 1 2 3 21 21 H 1.08991 * 109.47176 * 34.20884 * 1 2 3 22 22 H 1.09001 * 109.46547 * 154.21357 * 1 2 3 23 23 H 0.97002 * 119.99657 * 180.02562 * 6 5 3 24 24 H 1.09005 * 109.47376 * 149.99794 * 11 2 1 25 25 H 1.09005 * 109.47102 * 30.00683 * 11 2 1 26 26 H 1.09003 * 110.48640 * 98.40766 * 14 12 11 27 27 H 1.09000 * 110.60323 * 335.81468 * 14 12 11 28 28 H 1.08994 * 109.47605 * 269.98402 * 18 17 15 29 29 H 1.09007 * 109.46762 * 29.97868 * 18 17 15 30 30 H 1.09001 * 109.47242 * 149.97689 * 18 17 15 31 31 H 1.08999 * 110.24579 * 101.98088 * 19 17 15 32 32 H 1.08996 * 110.24649 * 223.98472 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1860 0.0000 4 1 3.1685 1.2213 -0.3567 5 6 1.5343 2.3426 0.4584 6 7 0.3849 2.2684 1.0954 7 14 2.3375 4.0046 0.1714 8 1 2.4919 4.2344 -1.2875 9 1 1.4864 5.0730 0.7540 10 1 3.6731 4.0275 0.8202 11 6 2.1976 -1.2686 0.0006 12 6 2.4526 -1.7098 1.4432 13 1 1.5292 -1.6974 2.0223 14 6 3.5348 -0.8281 2.1083 15 6 4.3161 -1.7906 2.9754 16 8 5.0671 -1.4662 3.8707 17 7 4.0571 -3.0577 2.6089 18 6 4.6415 -4.2391 3.2483 19 6 3.1133 -3.1055 1.4860 20 1 -0.3633 0.0754 1.0250 21 1 -0.3633 0.8498 -0.5777 22 1 -0.3632 -0.9254 -0.4471 23 1 -0.0453 3.0768 1.4154 24 1 3.1500 -1.1385 -0.5134 25 1 1.6085 -2.0285 -0.5131 26 1 3.0727 -0.0530 2.7197 27 1 4.1830 -0.3820 1.3540 28 1 5.5721 -4.5016 2.7454 29 1 4.8442 -4.0217 4.2971 30 1 3.9430 -5.0730 3.1786 31 1 3.6449 -3.2999 0.5545 32 1 2.3601 -3.8742 1.6588 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687183725.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:05 Heat of formation + Delta-G solvation = -30.900066 kcal Electronic energy + Delta-G solvation = -14549.256192 eV Core-core repulsion = 12123.770245 eV Total energy + Delta-G solvation = -2425.485948 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.34738 -38.15622 -36.89773 -34.24047 -32.55732 -29.22376 -28.13701 -27.61603 -26.17882 -23.27799 -21.30960 -20.48889 -18.80856 -17.66225 -17.25959 -16.61820 -16.28110 -15.55559 -15.25056 -14.60524 -14.57074 -14.47484 -14.24491 -13.26640 -13.18917 -13.06308 -12.97813 -12.79709 -12.57795 -12.16627 -12.08973 -11.87524 -11.79299 -11.52570 -10.77672 -10.56637 -9.67948 -8.72660 -7.77552 -5.23420 1.48488 1.49177 1.52357 1.54699 2.13939 2.54693 3.34854 3.53481 3.59915 3.92062 4.11472 4.25007 4.43785 4.55455 4.68696 4.78734 4.83340 4.86888 4.92750 5.00632 5.04797 5.22303 5.42775 5.46754 5.64298 5.70500 5.83211 6.07008 6.39484 7.14245 7.22605 7.95895 8.37141 9.25561 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.038167 B = 0.009060 C = 0.007867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.438794 B = 3089.908878 C = 3558.405939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.616 5.616 3 C -0.247 4.247 4 H 0.072 0.928 5 C -0.053 4.053 6 N -0.938 5.938 7 Si 0.954 3.046 8 H -0.277 1.277 9 H -0.299 1.299 10 H -0.281 1.281 11 C 0.160 3.840 12 C -0.109 4.109 13 H 0.066 0.934 14 C -0.126 4.126 15 C 0.508 3.492 16 O -0.591 6.591 17 N -0.620 5.620 18 C 0.091 3.909 19 C 0.115 3.885 20 H 0.000 1.000 21 H 0.014 0.986 22 H 0.036 0.964 23 H 0.244 0.756 24 H 0.056 0.944 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.096 0.904 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.736 -13.873 -1.813 14.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.339 5.339 3 C -0.378 4.378 4 H 0.089 0.911 5 C -0.247 4.247 6 N -0.585 5.585 7 Si 0.784 3.216 8 H -0.203 1.203 9 H -0.225 1.225 10 H -0.207 1.207 11 C 0.033 3.967 12 C -0.130 4.130 13 H 0.085 0.915 14 C -0.167 4.167 15 C 0.297 3.703 16 O -0.473 6.473 17 N -0.353 5.353 18 C -0.050 4.050 19 C -0.007 4.007 20 H 0.018 0.982 21 H 0.033 0.967 22 H 0.055 0.945 23 H 0.054 0.946 24 H 0.074 0.926 25 H 0.095 0.905 26 H 0.082 0.918 27 H 0.114 0.886 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.123 0.877 31 H 0.113 0.887 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.039 -13.684 -1.294 14.326 hybrid contribution 0.172 1.536 0.371 1.590 sum 4.211 -12.148 -0.923 12.890 Atomic orbital electron populations 1.20561 0.82772 0.96193 0.97416 1.44193 1.02146 1.01785 1.85735 1.19419 0.97924 0.86494 1.33951 0.91055 1.25647 0.98456 1.01343 0.99294 1.70205 1.19201 1.27100 1.42044 0.85530 0.77599 0.80648 0.77845 1.20326 1.22538 1.20738 1.21045 0.96548 0.87033 0.92026 1.22793 0.96539 0.93023 1.00676 0.91508 1.22080 0.98159 0.97330 0.99101 1.21410 0.80727 0.85374 0.82764 1.90619 1.40631 1.81999 1.34020 1.48372 1.46030 1.05976 1.34946 1.21740 0.99488 0.86370 0.97400 1.22350 0.91747 0.97607 0.89041 0.98170 0.96708 0.94529 0.94638 0.92550 0.90460 0.91769 0.88568 0.91493 0.92495 0.87709 0.88659 0.87620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.16 9.01 127.77 1.15 9.31 16 2 N -0.62 -28.37 2.91 -726.94 -2.11 -30.49 16 3 C -0.25 -12.87 8.99 84.03 0.76 -12.12 16 4 H 0.07 3.60 7.84 -2.91 -0.02 3.58 16 5 C -0.05 -2.90 5.13 84.86 0.44 -2.47 16 6 N -0.94 -54.91 10.59 21.65 0.23 -54.68 16 7 Si 0.95 45.22 29.57 68.60 2.03 47.25 16 8 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 9 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 10 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 11 C 0.16 5.39 5.08 86.38 0.44 5.83 16 12 C -0.11 -3.44 3.37 -9.74 -0.03 -3.48 16 13 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 14 C -0.13 -4.83 5.71 30.59 0.17 -4.65 16 15 C 0.51 18.84 8.02 87.90 0.71 19.55 16 16 O -0.59 -26.50 17.59 -3.03 -0.05 -26.55 16 17 N -0.62 -16.82 3.33 -842.90 -2.81 -19.63 16 18 C 0.09 1.80 10.96 127.77 1.40 3.20 16 19 C 0.11 2.52 6.91 86.83 0.60 3.12 16 20 H 0.00 0.00 7.42 -2.38 -0.02 -0.02 16 21 H 0.01 0.74 7.19 -2.39 -0.02 0.72 16 22 H 0.04 1.38 7.84 -2.39 -0.02 1.36 16 23 H 0.24 14.16 8.31 -92.71 -0.77 13.39 16 24 H 0.06 1.83 7.83 -2.38 -0.02 1.81 16 25 H 0.08 2.13 7.86 -2.38 -0.02 2.11 16 26 H 0.06 2.93 8.14 -2.39 -0.02 2.91 16 27 H 0.10 3.74 7.76 -2.39 -0.02 3.72 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.06 1.31 7.93 -2.38 -0.02 1.29 16 30 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.10 1.69 7.89 -2.39 -0.02 1.68 16 32 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -68.89 267.08 3.99 -64.90 By element: Atomic # 1 Polarization: -0.17 SS G_CDS: 1.08 Total: 0.92 kcal Atomic # 6 Polarization: 12.66 SS G_CDS: 5.63 Total: 18.29 kcal Atomic # 7 Polarization: -100.10 SS G_CDS: -4.69 Total: -104.80 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.05 Total: -26.55 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -68.89 3.99 -64.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687183725.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.001 kcal (2) G-P(sol) polarization free energy of solvation -68.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds