Wall clock time and date at job start Mon Mar 30 2020 02:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46962 * 2 1 4 4 C 1.50706 * 109.46686 * 240.00122 * 2 1 3 5 5 H 1.07999 * 119.99872 * 239.99612 * 4 2 1 6 6 C 1.37877 * 119.99953 * 60.00501 * 4 2 1 7 7 N 1.31512 * 120.00190 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99714 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47336 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.47178 * 119.99688 * 8 6 4 11 11 H 1.48501 * 109.46740 * 239.99257 * 8 6 4 12 12 N 1.46895 * 109.47315 * 120.00165 * 2 1 3 13 13 C 1.46900 * 110.99826 * 305.13474 * 12 2 1 14 14 C 1.46904 * 110.99953 * 181.17980 * 12 2 1 15 15 H 1.09002 * 110.53841 * 314.90224 * 14 12 2 16 16 C 1.54623 * 110.48594 * 192.28863 * 14 12 2 17 17 C 1.54482 * 101.76436 * 266.11881 * 16 14 12 18 18 N 1.46765 * 105.47371 * 334.58588 * 17 16 14 19 19 C 1.34416 * 111.30015 * 17.01752 * 18 17 16 20 20 O 1.21276 * 124.94026 * 179.63475 * 19 18 17 21 21 H 1.09000 * 109.46820 * 186.20952 * 1 2 3 22 22 H 1.09000 * 109.46871 * 306.20824 * 1 2 3 23 23 H 1.09001 * 109.47636 * 66.21178 * 1 2 3 24 24 H 0.97001 * 120.00023 * 180.02562 * 7 6 4 25 25 H 1.08999 * 109.47086 * 296.04136 * 13 12 2 26 26 H 1.08991 * 109.47381 * 56.04493 * 13 12 2 27 27 H 1.09006 * 109.46956 * 176.05127 * 13 12 2 28 28 H 1.08999 * 110.97057 * 148.00420 * 16 14 12 29 29 H 1.08999 * 111.00353 * 24.24922 * 16 14 12 30 30 H 1.08998 * 110.24438 * 93.58382 * 17 16 14 31 31 H 1.09001 * 110.24741 * 215.58505 * 17 16 14 32 32 H 0.97002 * 124.34619 * 197.01264 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 3.1481 -2.2856 -3.6039 10 1 1.1676 -1.5865 -4.8166 11 1 3.1470 -0.1856 -4.8161 12 7 2.0197 -0.6925 1.1994 13 6 1.4511 -0.1009 2.4178 14 6 3.4880 -0.6877 1.2475 15 1 3.9033 -0.9452 0.2731 16 6 3.9972 -1.6682 2.3292 17 6 4.1604 -0.7344 3.5490 18 7 4.3727 0.6060 2.9903 19 6 3.9983 0.6625 1.7006 20 8 4.0613 1.6516 1.0017 21 1 -0.3633 -1.0217 0.1112 22 1 -0.3633 0.6071 0.8292 23 1 -0.3634 0.4145 -0.9403 24 1 0.7082 1.1610 -3.4844 25 1 1.7942 0.9290 2.5160 26 1 0.3630 -0.1171 2.3560 27 1 1.7743 -0.6757 3.2858 28 1 4.9537 -2.1043 2.0411 29 1 3.2604 -2.4461 2.5293 30 1 3.2575 -0.7500 4.1593 31 1 5.0231 -1.0367 4.1426 32 1 4.7365 1.3550 3.4880 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687801230.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:34 Heat of formation + Delta-G solvation = -19.902563 kcal Electronic energy + Delta-G solvation = -15067.400958 eV Core-core repulsion = 12642.391898 eV Total energy + Delta-G solvation = -2425.009060 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.27446 -36.37166 -35.53352 -32.60841 -30.37166 -28.41816 -27.45349 -25.10481 -23.84120 -21.40061 -20.14448 -18.97720 -16.94516 -16.64336 -16.04214 -14.77914 -14.55060 -13.99004 -13.68239 -13.34508 -12.80393 -12.71012 -12.26864 -12.09511 -11.76318 -11.56984 -10.95653 -10.70622 -10.59040 -10.48969 -10.21585 -9.99792 -9.75018 -9.56115 -8.86096 -8.75010 -8.33716 -7.22807 -5.92474 -3.97151 3.13004 3.35710 3.42922 3.46431 3.71579 4.46784 4.76988 4.84660 5.07395 5.29118 5.41627 5.45761 5.62067 5.87674 6.06216 6.11025 6.26808 6.41547 6.53893 6.86475 7.06042 7.10522 7.20059 7.35768 7.56356 7.68646 7.86400 8.16956 8.35035 8.57241 8.76058 9.06948 9.66649 11.14480 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.038205 B = 0.010608 C = 0.009969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.706222 B = 2638.855408 C = 2807.908628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.202 3.798 3 H 0.016 0.984 4 C -0.500 4.500 5 H 0.062 0.938 6 C 0.059 3.941 7 N -0.890 5.890 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 N -0.506 5.506 13 C 0.011 3.989 14 C 0.060 3.940 15 H 0.125 0.875 16 C -0.130 4.130 17 C 0.101 3.899 18 N -0.743 5.743 19 C 0.492 3.508 20 O -0.520 6.520 21 H 0.033 0.967 22 H 0.007 0.993 23 H 0.089 0.911 24 H 0.259 0.741 25 H 0.014 0.986 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.558 -4.475 11.651 13.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.097 3.903 3 H 0.034 0.966 4 C -0.539 4.539 5 H 0.080 0.920 6 C -0.142 4.142 7 N -0.530 5.530 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.231 5.231 13 C -0.137 4.137 14 C -0.052 4.052 15 H 0.143 0.857 16 C -0.169 4.169 17 C -0.024 4.024 18 N -0.401 5.401 19 C 0.277 3.723 20 O -0.393 6.393 21 H 0.052 0.948 22 H 0.026 0.974 23 H 0.108 0.892 24 H 0.069 0.931 25 H 0.033 0.967 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.115 0.885 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 4.284 -4.414 10.999 12.602 hybrid contribution 0.692 0.825 -0.433 1.160 sum 4.976 -3.590 10.566 12.218 Atomic orbital electron populations 1.21877 0.97647 0.98609 1.01145 1.19430 0.92233 0.93240 0.85389 0.96598 1.21084 1.31016 1.12065 0.89731 0.91951 1.24913 0.95264 0.95028 0.98987 1.69897 1.36917 1.22945 1.23210 0.86478 0.78549 0.79545 0.83038 1.19726 1.21112 1.21173 1.62570 1.02059 1.54869 1.03573 1.22609 1.01081 0.96467 0.93563 1.22562 0.91373 0.90335 1.00974 0.85733 1.22704 1.02232 0.97887 0.94052 1.22143 1.00995 0.82467 0.96793 1.46409 1.67042 1.13280 1.13389 1.22279 0.76056 0.92447 0.81564 1.90748 1.53356 1.37158 1.58075 0.94779 0.97406 0.89201 0.93083 0.96743 0.91160 0.92405 0.90257 0.88461 0.91305 0.91178 0.76380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.38 8.43 37.16 0.31 -3.06 16 2 C 0.20 5.31 1.96 -68.86 -0.13 5.17 16 3 H 0.02 0.49 7.01 -51.93 -0.36 0.13 16 4 C -0.50 -14.00 7.74 -34.44 -0.27 -14.26 16 5 H 0.06 1.71 6.91 -52.49 -0.36 1.34 16 6 C 0.06 1.69 5.29 -17.82 -0.09 1.59 16 7 N -0.89 -26.40 11.29 55.43 0.63 -25.77 16 8 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 9 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 N -0.51 -10.81 4.56 -228.31 -1.04 -11.85 16 13 C 0.01 0.21 8.04 60.06 0.48 0.69 16 14 C 0.06 1.17 2.92 -67.72 -0.20 0.97 16 15 H 0.12 2.73 6.32 -51.93 -0.33 2.40 16 16 C -0.13 -1.76 6.41 -25.10 -0.16 -1.92 16 17 C 0.10 1.15 6.91 -3.12 -0.02 1.12 16 18 N -0.74 -10.85 6.07 -59.20 -0.36 -11.21 16 19 C 0.49 9.92 5.83 -10.86 -0.06 9.85 16 20 O -0.52 -13.17 17.13 5.56 0.10 -13.08 16 21 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.01 0.16 6.62 -51.93 -0.34 -0.18 16 23 H 0.09 2.49 5.93 -51.93 -0.31 2.18 16 24 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.01 0.28 6.79 -51.93 -0.35 -0.07 16 26 H 0.07 1.29 6.13 -51.93 -0.32 0.97 16 27 H 0.06 0.86 5.26 -51.93 -0.27 0.58 16 28 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.10 1.25 8.08 -51.93 -0.42 0.83 16 30 H 0.07 0.73 6.21 -51.93 -0.32 0.41 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.40 5.01 8.96 -40.82 -0.37 4.64 16 LS Contribution 250.39 15.07 3.77 3.77 Total: -1.00 -32.81 250.39 -6.23 -39.04 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -4.16 Total: 2.12 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -0.14 Total: 0.16 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: -0.77 Total: -48.84 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.10 Total: -13.08 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -32.81 -6.23 -39.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687801230.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.137 kcal (2) G-P(sol) polarization free energy of solvation -32.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds