Wall clock time and date at job start Mon Mar 30 2020 02:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46962 * 2 1 4 4 C 1.50706 * 109.46686 * 240.00122 * 2 1 3 5 5 H 1.07999 * 119.99872 * 239.99612 * 4 2 1 6 6 C 1.37877 * 119.99953 * 60.00501 * 4 2 1 7 7 N 1.31512 * 120.00190 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99714 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47336 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.47178 * 119.99688 * 8 6 4 11 11 H 1.48501 * 109.46740 * 239.99257 * 8 6 4 12 12 N 1.46895 * 109.47315 * 120.00165 * 2 1 3 13 13 C 1.46900 * 110.99826 * 305.13474 * 12 2 1 14 14 C 1.46904 * 110.99953 * 181.17980 * 12 2 1 15 15 H 1.09002 * 110.53841 * 314.90224 * 14 12 2 16 16 C 1.54623 * 110.48594 * 192.28863 * 14 12 2 17 17 C 1.54482 * 101.76436 * 266.11881 * 16 14 12 18 18 N 1.46765 * 105.47371 * 334.58588 * 17 16 14 19 19 C 1.34416 * 111.30015 * 17.01752 * 18 17 16 20 20 O 1.21276 * 124.94026 * 179.63475 * 19 18 17 21 21 H 1.09000 * 109.46820 * 186.20952 * 1 2 3 22 22 H 1.09000 * 109.46871 * 306.20824 * 1 2 3 23 23 H 1.09001 * 109.47636 * 66.21178 * 1 2 3 24 24 H 0.97001 * 120.00023 * 180.02562 * 7 6 4 25 25 H 1.08999 * 109.47086 * 296.04136 * 13 12 2 26 26 H 1.08991 * 109.47381 * 56.04493 * 13 12 2 27 27 H 1.09006 * 109.46956 * 176.05127 * 13 12 2 28 28 H 1.08999 * 110.97057 * 148.00420 * 16 14 12 29 29 H 1.08999 * 111.00353 * 24.24922 * 16 14 12 30 30 H 1.08998 * 110.24438 * 93.58382 * 17 16 14 31 31 H 1.09001 * 110.24741 * 215.58505 * 17 16 14 32 32 H 0.97002 * 124.34619 * 197.01264 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 3.1481 -2.2856 -3.6039 10 1 1.1676 -1.5865 -4.8166 11 1 3.1470 -0.1856 -4.8161 12 7 2.0197 -0.6925 1.1994 13 6 1.4511 -0.1009 2.4178 14 6 3.4880 -0.6877 1.2475 15 1 3.9033 -0.9452 0.2731 16 6 3.9972 -1.6682 2.3292 17 6 4.1604 -0.7344 3.5490 18 7 4.3727 0.6060 2.9903 19 6 3.9983 0.6625 1.7006 20 8 4.0613 1.6516 1.0017 21 1 -0.3633 -1.0217 0.1112 22 1 -0.3633 0.6071 0.8292 23 1 -0.3634 0.4145 -0.9403 24 1 0.7082 1.1610 -3.4844 25 1 1.7942 0.9290 2.5160 26 1 0.3630 -0.1171 2.3560 27 1 1.7743 -0.6757 3.2858 28 1 4.9537 -2.1043 2.0411 29 1 3.2604 -2.4461 2.5293 30 1 3.2575 -0.7500 4.1593 31 1 5.0231 -1.0367 4.1426 32 1 4.7365 1.3550 3.4880 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687801230.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:34 Heat of formation + Delta-G solvation = -47.109411 kcal Electronic energy + Delta-G solvation = -15068.580735 eV Core-core repulsion = 12642.391898 eV Total energy + Delta-G solvation = -2426.188837 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.73785 -38.11304 -37.09529 -34.60852 -31.91643 -30.16534 -28.91195 -27.02113 -25.56796 -22.58276 -21.95092 -20.62124 -18.47001 -18.34438 -17.79745 -16.60213 -16.24463 -15.49820 -15.31769 -14.88144 -14.55657 -14.31082 -13.76954 -13.58715 -13.48001 -12.95064 -12.78447 -12.54096 -12.35376 -12.25734 -12.16886 -11.82661 -11.45260 -11.22999 -10.90126 -10.49948 -9.99452 -9.00448 -8.09086 -6.21041 1.41259 1.42369 1.54368 1.56448 2.43307 2.48889 3.17458 3.27188 3.59951 3.83006 4.20904 4.32070 4.43198 4.55263 4.70645 4.79594 4.85786 4.98067 5.02470 5.15224 5.21792 5.26520 5.50614 5.69789 5.75834 5.94308 6.05136 6.26004 6.29172 6.62408 6.91665 7.32059 7.46966 8.97735 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.038205 B = 0.010608 C = 0.009969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.706222 B = 2638.855408 C = 2807.908628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.208 3.792 3 H -0.039 1.039 4 C -0.512 4.512 5 H 0.064 0.936 6 C 0.004 3.996 7 N -0.924 5.924 8 Si 0.962 3.038 9 H -0.260 1.260 10 H -0.277 1.277 11 H -0.288 1.288 12 N -0.504 5.504 13 C 0.014 3.986 14 C 0.047 3.953 15 H 0.089 0.911 16 C -0.117 4.117 17 C 0.100 3.900 18 N -0.721 5.721 19 C 0.483 3.517 20 O -0.589 6.589 21 H 0.043 0.957 22 H 0.024 0.976 23 H 0.060 0.940 24 H 0.259 0.741 25 H -0.005 1.005 26 H 0.069 0.931 27 H 0.104 0.896 28 H 0.101 0.899 29 H 0.112 0.888 30 H 0.089 0.911 31 H 0.117 0.883 32 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.398 -6.685 13.774 16.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.101 3.899 3 H -0.022 1.022 4 C -0.550 4.550 5 H 0.082 0.918 6 C -0.194 4.194 7 N -0.565 5.565 8 Si 0.788 3.212 9 H -0.183 1.183 10 H -0.202 1.202 11 H -0.215 1.215 12 N -0.228 5.228 13 C -0.134 4.134 14 C -0.065 4.065 15 H 0.107 0.893 16 C -0.155 4.155 17 C -0.023 4.023 18 N -0.377 5.377 19 C 0.268 3.732 20 O -0.468 6.468 21 H 0.062 0.938 22 H 0.043 0.957 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.014 0.986 26 H 0.088 0.912 27 H 0.122 0.878 28 H 0.119 0.881 29 H 0.131 0.869 30 H 0.107 0.893 31 H 0.135 0.865 32 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 5.140 -6.672 13.207 15.664 hybrid contribution 0.470 1.516 -0.984 1.867 sum 5.611 -5.156 12.224 14.404 Atomic orbital electron populations 1.21688 0.97036 0.99160 1.00276 1.19138 0.92693 0.90547 0.87492 1.02154 1.21409 1.30770 1.12036 0.90807 0.91820 1.25800 0.95542 0.95806 1.02272 1.70053 1.38157 1.24442 1.23804 0.85440 0.78199 0.78578 0.79032 1.18349 1.20213 1.21472 1.62524 1.03570 1.53809 1.02940 1.22705 1.00985 0.96046 0.93691 1.22656 0.90070 0.92052 1.01746 0.89296 1.22741 1.03385 0.97115 0.92244 1.22486 1.04114 0.79600 0.96098 1.46315 1.64633 1.15311 1.11469 1.22440 0.75911 0.91791 0.83080 1.90706 1.56492 1.39272 1.60346 0.93787 0.95659 0.92161 0.93157 0.98630 0.91228 0.87827 0.88073 0.86930 0.89335 0.86485 0.74902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.32 8.43 71.98 0.61 -5.71 16 2 C 0.21 11.27 1.96 44.17 0.09 11.36 16 3 H -0.04 -2.53 7.01 -2.39 -0.02 -2.55 16 4 C -0.51 -29.41 7.74 25.60 0.20 -29.21 16 5 H 0.06 3.54 6.91 -2.91 -0.02 3.52 16 6 C 0.00 0.21 5.29 84.66 0.45 0.66 16 7 N -0.92 -56.89 11.29 21.45 0.24 -56.65 16 8 Si 0.96 45.62 29.54 68.60 2.03 47.64 16 9 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 11 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 12 N -0.50 -21.33 4.56 -876.23 -3.99 -25.32 16 13 C 0.01 0.47 8.04 127.69 1.03 1.50 16 14 C 0.05 1.82 2.92 44.91 0.13 1.95 16 15 H 0.09 4.01 6.32 -2.39 -0.02 3.99 16 16 C -0.12 -2.68 6.41 31.65 0.20 -2.48 16 17 C 0.10 1.75 6.91 86.83 0.60 2.35 16 18 N -0.72 -19.19 6.07 -459.81 -2.79 -21.98 16 19 C 0.48 19.53 5.83 87.90 0.51 20.04 16 20 O -0.59 -31.39 17.13 -3.02 -0.05 -31.44 16 21 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 22 H 0.02 1.15 6.62 -2.39 -0.02 1.13 16 23 H 0.06 3.45 5.93 -2.39 -0.01 3.43 16 24 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 25 H 0.00 -0.19 6.79 -2.39 -0.02 -0.21 16 26 H 0.07 2.43 6.13 -2.39 -0.01 2.41 16 27 H 0.10 2.62 5.26 -2.38 -0.01 2.61 16 28 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.11 2.32 8.08 -2.39 -0.02 2.30 16 30 H 0.09 1.31 6.21 -2.39 -0.01 1.29 16 31 H 0.12 1.16 8.14 -2.39 -0.02 1.15 16 32 H 0.41 9.26 8.96 -92.71 -0.83 8.43 16 Total: -1.00 -76.87 250.39 -0.45 -77.33 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 0.30 Total: 9.97 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: 3.81 Total: 0.45 kcal Atomic # 7 Polarization: -97.41 SS G_CDS: -6.54 Total: -103.95 kcal Atomic # 8 Polarization: -31.39 SS G_CDS: -0.05 Total: -31.44 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Total: -76.87 -0.45 -77.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687801230.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.218 kcal (2) G-P(sol) polarization free energy of solvation -76.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds