Wall clock time and date at job start Mon Mar 30 2020 02:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.46983 * 2 1 4 4 C 1.50701 * 109.47220 * 120.00379 * 2 1 3 5 5 H 1.07998 * 119.99650 * 120.00202 * 4 2 1 6 6 C 1.37872 * 119.99715 * 299.99841 * 4 2 1 7 7 N 1.31518 * 119.99812 * 179.97438 * 6 4 2 8 8 Si 1.86796 * 120.00484 * 0.02562 * 6 4 2 9 9 H 1.48499 * 109.47259 * 89.99314 * 8 6 4 10 10 H 1.48502 * 109.47333 * 209.99592 * 8 6 4 11 11 H 1.48504 * 109.46824 * 329.99531 * 8 6 4 12 12 N 1.46901 * 109.47025 * 240.00640 * 2 1 3 13 13 C 1.46897 * 110.99595 * 179.52272 * 12 2 1 14 14 C 1.46901 * 111.00121 * 55.56785 * 12 2 1 15 15 H 1.08994 * 110.43395 * 305.92981 * 14 12 2 16 16 C 1.54629 * 110.48388 * 68.47641 * 14 12 2 17 17 C 1.54478 * 101.76410 * 93.88084 * 16 14 12 18 18 N 1.46762 * 105.47709 * 25.41516 * 17 16 14 19 19 C 1.34425 * 111.29657 * 342.98123 * 18 17 16 20 20 O 1.21282 * 124.93699 * 180.40968 * 19 18 17 21 21 H 1.08998 * 109.47379 * 293.60148 * 1 2 3 22 22 H 1.08996 * 109.47487 * 53.60255 * 1 2 3 23 23 H 1.09007 * 109.47246 * 173.59982 * 1 2 3 24 24 H 0.96999 * 119.99998 * 180.02562 * 7 6 4 25 25 H 1.08995 * 109.47524 * 66.13489 * 13 12 2 26 26 H 1.09006 * 109.47026 * 186.13156 * 13 12 2 27 27 H 1.08999 * 109.47272 * 306.12447 * 13 12 2 28 28 H 1.09001 * 110.96232 * 211.99515 * 16 14 12 29 29 H 1.08999 * 110.96983 * 335.75825 * 16 14 12 30 30 H 1.09000 * 110.24526 * 144.41250 * 17 16 14 31 31 H 1.09004 * 110.24485 * 266.32220 * 17 16 14 32 32 H 0.96993 * 124.35491 * 162.98871 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4826 7 7 2.1373 -0.8598 3.5564 8 14 0.6248 1.2789 2.6542 9 1 -0.8028 0.8725 2.6998 10 1 0.9759 1.9948 3.9070 11 1 0.8471 2.1764 1.4922 12 7 2.0196 -0.6924 -1.1995 13 6 3.4880 -0.7020 -1.2391 14 6 1.4640 -0.0900 -2.4187 15 1 0.3760 -0.0558 -2.3645 16 6 2.0403 1.3288 -2.6324 17 6 3.2375 1.0452 -3.5665 18 7 2.9012 -0.1997 -4.2673 19 6 1.9119 -0.8604 -3.6413 20 8 1.4462 -1.9199 -4.0039 21 1 -0.3634 0.4114 0.9417 22 1 -0.3634 0.6098 -0.8271 23 1 -0.3634 -1.0213 -0.1146 24 1 1.9026 -0.5287 4.4375 25 1 3.8697 -1.3081 -0.4176 26 1 3.8232 -1.1228 -2.1872 27 1 3.8609 0.3176 -1.1422 28 1 1.3111 1.9768 -3.1187 29 1 2.3751 1.7600 -1.6890 30 1 3.3595 1.8591 -4.2811 31 1 4.1491 0.9166 -2.9828 32 1 3.3367 -0.5064 -5.0778 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687801233.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:44 Heat of formation + Delta-G solvation = -38.676452 kcal Electronic energy + Delta-G solvation = -15001.515007 eV Core-core repulsion = 12575.691851 eV Total energy + Delta-G solvation = -2425.823157 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.81187 -38.61084 -36.88554 -34.59803 -32.11790 -31.00828 -28.88414 -26.83938 -25.57419 -23.29455 -21.80596 -20.37195 -18.95685 -18.42012 -17.50262 -17.21848 -16.06014 -15.61223 -15.41380 -14.86246 -14.70802 -14.44335 -14.11024 -13.87231 -13.67817 -13.29194 -12.97804 -12.62183 -12.38656 -12.27489 -12.21932 -11.83082 -11.40836 -11.10676 -10.87235 -10.71223 -10.09577 -8.97780 -8.25389 -6.29712 1.35260 1.38238 1.47767 1.49794 2.34724 2.41673 3.07961 3.21200 3.44618 3.67684 4.04151 4.16128 4.34723 4.45121 4.53585 4.66373 4.72257 4.73592 4.80811 4.96023 5.05449 5.08073 5.17101 5.43766 5.64818 5.82840 6.00128 6.01472 6.30233 6.64325 6.76977 7.27622 7.34822 8.91230 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.046754 B = 0.009776 C = 0.009522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.739497 B = 2863.522350 C = 2939.916389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.191 3.809 3 H 0.016 0.984 4 C -0.508 4.508 5 H 0.034 0.966 6 C 0.010 3.990 7 N -0.950 5.950 8 Si 0.951 3.049 9 H -0.270 1.270 10 H -0.300 1.300 11 H -0.237 1.237 12 N -0.529 5.529 13 C 0.040 3.960 14 C 0.039 3.961 15 H 0.111 0.889 16 C -0.167 4.167 17 C 0.102 3.898 18 N -0.717 5.717 19 C 0.527 3.473 20 O -0.576 6.576 21 H 0.039 0.961 22 H 0.068 0.932 23 H 0.048 0.952 24 H 0.265 0.735 25 H 0.045 0.955 26 H 0.062 0.938 27 H 0.044 0.956 28 H 0.110 0.890 29 H 0.088 0.912 30 H 0.117 0.883 31 H 0.078 0.922 32 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.107 10.319 -14.422 17.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.083 3.917 3 H 0.033 0.967 4 C -0.547 4.547 5 H 0.053 0.947 6 C -0.187 4.187 7 N -0.591 5.591 8 Si 0.778 3.222 9 H -0.196 1.196 10 H -0.228 1.228 11 H -0.160 1.160 12 N -0.255 5.255 13 C -0.108 4.108 14 C -0.073 4.073 15 H 0.128 0.872 16 C -0.206 4.206 17 C -0.022 4.022 18 N -0.373 5.373 19 C 0.313 3.687 20 O -0.455 6.455 21 H 0.058 0.942 22 H 0.086 0.914 23 H 0.067 0.933 24 H 0.074 0.926 25 H 0.064 0.936 26 H 0.081 0.919 27 H 0.062 0.938 28 H 0.128 0.872 29 H 0.107 0.893 30 H 0.135 0.865 31 H 0.096 0.904 32 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 0.671 9.318 -14.316 17.095 hybrid contribution 0.129 0.615 0.461 0.779 sum 0.800 9.933 -13.855 17.066 Atomic orbital electron populations 1.22196 0.97171 1.01417 0.99878 1.19561 0.92417 0.92485 0.87208 0.96689 1.21179 1.31029 1.12319 0.90157 0.94739 1.25835 0.97418 1.00280 0.95193 1.70050 1.47815 1.42614 0.98601 0.85820 0.78866 0.79786 0.77735 1.19608 1.22820 1.16000 1.61906 1.08580 1.54336 1.00637 1.22298 0.87357 1.00421 1.00719 1.22631 1.02128 0.93401 0.89108 0.87166 1.23296 0.99196 0.96557 1.01560 1.22340 0.97698 0.86100 0.96031 1.46163 1.37036 1.24741 1.29315 1.20919 0.79305 0.83770 0.84717 1.90678 1.60374 1.23459 1.70941 0.94231 0.91355 0.93253 0.92579 0.93630 0.91910 0.93805 0.87184 0.89334 0.86507 0.90361 0.74082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.09 8.11 71.98 0.58 -5.51 16 2 C 0.19 8.46 1.37 44.17 0.06 8.52 16 3 H 0.02 0.66 5.66 -2.39 -0.01 0.65 16 4 C -0.51 -28.53 8.59 25.60 0.22 -28.31 16 5 H 0.03 2.21 6.96 -2.91 -0.02 2.19 16 6 C 0.01 0.55 5.45 84.65 0.46 1.01 16 7 N -0.95 -59.07 13.96 21.45 0.30 -58.77 16 8 Si 0.95 43.09 24.42 68.60 1.68 44.76 16 9 H -0.27 -11.81 6.82 99.48 0.68 -11.14 16 10 H -0.30 -13.66 7.11 99.48 0.71 -12.96 16 11 H -0.24 -9.43 6.53 99.48 0.65 -8.78 16 12 N -0.53 -21.39 4.64 -876.25 -4.07 -25.46 16 13 C 0.04 1.48 7.49 127.69 0.96 2.44 16 14 C 0.04 1.25 2.81 44.91 0.13 1.38 16 15 H 0.11 3.53 6.11 -2.39 -0.01 3.51 16 16 C -0.17 -3.64 6.04 31.65 0.19 -3.45 16 17 C 0.10 1.71 6.80 86.83 0.59 2.30 16 18 N -0.72 -15.64 5.77 -459.80 -2.65 -18.29 16 19 C 0.53 17.12 6.79 87.90 0.60 17.72 16 20 O -0.58 -24.09 18.03 -3.03 -0.05 -24.15 16 21 H 0.04 1.66 3.21 -2.39 -0.01 1.65 16 22 H 0.07 2.23 6.60 -2.39 -0.02 2.21 16 23 H 0.05 2.12 8.14 -2.38 -0.02 2.11 16 24 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 25 H 0.04 1.99 6.71 -2.39 -0.02 1.97 16 26 H 0.06 2.07 6.04 -2.38 -0.01 2.05 16 27 H 0.04 1.41 6.08 -2.39 -0.01 1.40 16 28 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.09 2.14 5.82 -2.39 -0.01 2.12 16 30 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.08 1.33 6.32 -2.38 -0.02 1.32 16 32 H 0.42 7.24 8.96 -92.71 -0.83 6.41 16 Total: -1.00 -72.76 241.94 -0.79 -73.54 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 0.23 Total: 12.27 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: 3.79 Total: -3.91 kcal Atomic # 7 Polarization: -96.10 SS G_CDS: -6.42 Total: -102.52 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.05 Total: -24.15 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.68 Total: 44.76 kcal Total: -72.76 -0.79 -73.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687801233.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.867 kcal (2) G-P(sol) polarization free energy of solvation -72.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds