Wall clock time and date at job start Mon Mar 30 2020 02:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46507 * 109.46577 * 2 1 4 4 C 1.36936 * 119.99970 * 264.51465 * 3 2 1 5 5 H 1.08000 * 120.00294 * 146.63246 * 4 3 2 6 6 C 1.38814 * 120.00133 * 326.62593 * 4 3 2 7 7 N 1.31621 * 119.99760 * 337.28738 * 6 4 3 8 8 Si 1.86793 * 120.00006 * 157.28910 * 6 4 3 9 9 H 1.48499 * 109.47444 * 90.00021 * 8 6 4 10 10 H 1.48509 * 109.47121 * 210.00074 * 8 6 4 11 11 H 1.48496 * 109.47214 * 329.99601 * 8 6 4 12 12 C 1.46502 * 120.00122 * 84.51923 * 3 2 1 13 13 H 1.09002 * 109.32836 * 359.78381 * 12 3 2 14 14 C 1.53066 * 109.40105 * 239.99590 * 12 3 2 15 15 C 1.53345 * 108.42498 * 190.96576 * 14 12 3 16 16 C 1.52917 * 108.67112 * 67.53306 * 15 14 12 17 17 N 1.45762 * 110.32512 * 309.34799 * 16 15 14 18 18 C 1.32960 * 124.40698 * 18.96702 * 17 16 15 19 19 O 1.21283 * 118.35809 * 177.85064 * 18 17 16 20 20 H 1.09002 * 109.46740 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.46932 * 300.00023 * 1 2 3 22 22 H 1.08996 * 109.47409 * 60.00157 * 1 2 3 23 23 H 1.08996 * 109.47116 * 240.00740 * 2 1 3 24 24 H 1.08996 * 109.47409 * 119.99843 * 2 1 3 25 25 H 0.97000 * 119.99492 * 180.02562 * 7 6 4 26 26 H 1.09006 * 109.67147 * 71.23780 * 14 12 3 27 27 H 1.09001 * 109.67339 * 310.70536 * 14 12 3 28 28 H 1.08998 * 109.60570 * 307.77896 * 15 14 12 29 29 H 1.08994 * 109.73741 * 187.36652 * 15 14 12 30 30 H 1.09005 * 109.30568 * 69.55634 * 16 15 14 31 31 H 1.08998 * 109.30657 * 189.13931 * 16 15 14 32 32 H 0.96998 * 117.94555 * 198.97065 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3533 1.9891 -1.1805 5 1 2.1929 3.0496 -1.3064 6 6 2.8993 1.2421 -2.2153 7 7 3.5037 0.1020 -1.9560 8 14 2.7762 1.8549 -3.9755 9 1 3.9587 2.6959 -4.2908 10 1 2.7327 0.6948 -4.9017 11 1 1.5391 2.6610 -4.1336 12 6 2.1481 2.1124 1.2629 13 1 1.8333 1.4702 2.0855 14 6 1.2606 3.3588 1.2225 15 6 1.6153 4.2455 2.4223 16 6 3.0302 4.7915 2.2262 17 7 3.9524 3.7071 1.9127 18 6 3.5818 2.5121 1.4628 19 8 4.4456 1.7025 1.1993 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.8933 -0.5137 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 3.8856 -0.4198 -2.6791 26 1 0.2125 3.0651 1.2805 27 1 1.4382 3.9059 0.2966 28 1 1.5747 3.6554 3.3378 29 1 0.9098 5.0736 2.4893 30 1 3.0285 5.5110 1.4073 31 1 3.3550 5.2875 3.1408 32 1 4.9008 3.8658 2.0403 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691983029.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:33 Heat of formation + Delta-G solvation = -16.780998 kcal Electronic energy + Delta-G solvation = -15090.346805 eV Core-core repulsion = 12665.473107 eV Total energy + Delta-G solvation = -2424.873699 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.41189 -35.74560 -35.41335 -32.04058 -31.04281 -29.46166 -27.30941 -24.53907 -22.83531 -21.98697 -20.36327 -18.61260 -16.60437 -16.21081 -15.27822 -15.11131 -14.34478 -13.86213 -13.68847 -13.27089 -12.93931 -12.62092 -12.30168 -11.87488 -11.59021 -11.10515 -10.89832 -10.72006 -10.65026 -10.56407 -10.47065 -9.97384 -9.78782 -9.49696 -8.74768 -8.31854 -8.30859 -6.53974 -5.69311 -3.24115 3.40022 3.47186 3.49296 3.73297 4.07748 4.53379 5.10540 5.16798 5.32306 5.48384 5.59646 5.67257 5.84240 6.04297 6.06722 6.18403 6.33279 6.35931 6.57344 6.58562 6.74393 6.89474 6.93899 7.32140 7.55899 7.82974 7.86401 8.18801 8.55954 9.23915 9.30874 9.87105 10.42992 11.31308 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.029181 B = 0.012633 C = 0.011353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.287151 B = 2215.959998 C = 2465.712012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 N -0.556 5.556 4 C -0.263 4.263 5 H 0.062 0.938 6 C 0.015 3.985 7 N -0.871 5.871 8 Si 0.895 3.105 9 H -0.287 1.287 10 H -0.289 1.289 11 H -0.278 1.278 12 C 0.161 3.839 13 H 0.075 0.925 14 C -0.131 4.131 15 C -0.134 4.134 16 C 0.119 3.881 17 N -0.736 5.736 18 C 0.501 3.499 19 O -0.527 6.527 20 H 0.035 0.965 21 H 0.032 0.968 22 H 0.049 0.951 23 H 0.100 0.900 24 H 0.021 0.979 25 H 0.253 0.747 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.917 7.225 7.757 11.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.015 3.985 3 N -0.275 5.275 4 C -0.393 4.393 5 H 0.079 0.921 6 C -0.186 4.186 7 N -0.512 5.512 8 Si 0.724 3.276 9 H -0.214 1.214 10 H -0.215 1.215 11 H -0.203 1.203 12 C 0.049 3.951 13 H 0.093 0.907 14 C -0.170 4.170 15 C -0.172 4.172 16 C -0.006 4.006 17 N -0.392 5.392 18 C 0.286 3.714 19 O -0.400 6.400 20 H 0.054 0.946 21 H 0.051 0.949 22 H 0.068 0.932 23 H 0.118 0.882 24 H 0.039 0.961 25 H 0.063 0.937 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -4.628 6.542 7.436 10.932 hybrid contribution 0.429 0.554 -0.868 1.115 sum -4.199 7.096 6.568 10.542 Atomic orbital electron populations 1.22339 1.00717 0.98757 1.00372 1.20992 0.89592 0.85698 1.02177 1.43807 1.72516 1.11524 0.99676 1.18887 1.36713 0.93926 0.89768 0.92072 1.25132 0.96491 0.97905 0.99092 1.70081 1.34985 1.15367 1.30752 0.86445 0.77986 0.77952 0.85245 1.21414 1.21466 1.20327 1.20442 0.88966 0.93699 0.91978 0.90668 1.22119 1.00110 0.97098 0.97698 1.21858 0.95521 1.00115 0.99709 1.21174 0.90367 0.89472 0.99547 1.45748 1.09786 1.14214 1.69412 1.21673 0.94119 0.80633 0.74947 1.90716 1.51847 1.49636 1.47795 0.94615 0.94912 0.93163 0.88201 0.96077 0.93697 0.91704 0.90735 0.91712 0.90840 0.92717 0.91960 0.78429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.27 10.23 37.16 0.38 -2.89 16 2 C 0.14 3.46 5.90 -4.04 -0.02 3.43 16 3 N -0.56 -14.11 2.15 -167.23 -0.36 -14.47 16 4 C -0.26 -7.30 8.53 -15.06 -0.13 -7.43 16 5 H 0.06 1.68 6.66 -52.49 -0.35 1.33 16 6 C 0.02 0.43 4.91 -17.43 -0.09 0.35 16 7 N -0.87 -26.35 11.33 55.49 0.63 -25.72 16 8 Si 0.89 22.10 29.61 -169.99 -5.03 17.07 16 9 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.16 3.47 2.84 -69.30 -0.20 3.27 16 13 H 0.08 1.53 7.86 -51.93 -0.41 1.13 16 14 C -0.13 -2.26 5.44 -26.52 -0.14 -2.40 16 15 C -0.13 -1.74 6.02 -26.59 -0.16 -1.90 16 16 C 0.12 1.57 7.18 -4.48 -0.03 1.54 16 17 N -0.74 -12.98 5.42 -61.48 -0.33 -13.32 16 18 C 0.50 11.42 6.85 -12.04 -0.08 11.34 16 19 O -0.53 -14.84 17.48 5.56 0.10 -14.75 16 20 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 21 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 22 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 23 H 0.10 2.77 5.32 -51.93 -0.28 2.50 16 24 H 0.02 0.51 8.04 -51.93 -0.42 0.09 16 25 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.07 1.43 6.59 -51.93 -0.34 1.09 16 28 H 0.06 0.80 8.12 -51.93 -0.42 0.38 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.38 6.28 8.79 -40.82 -0.36 5.92 16 LS Contribution 261.89 15.07 3.95 3.95 Total: -1.00 -33.55 261.89 -6.19 -39.75 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -4.67 Total: 2.18 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -0.47 Total: 5.31 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: -0.06 Total: -53.51 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: 0.10 Total: -14.75 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -33.55 -6.19 -39.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691983029.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.965 kcal (2) G-P(sol) polarization free energy of solvation -33.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds