Wall clock time and date at job start Mon Mar 30 2020 02:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46507 * 109.46577 * 2 1 4 4 C 1.36936 * 119.99970 * 264.51465 * 3 2 1 5 5 H 1.08000 * 120.00294 * 146.63246 * 4 3 2 6 6 C 1.38814 * 120.00133 * 326.62593 * 4 3 2 7 7 N 1.31621 * 119.99760 * 337.28738 * 6 4 3 8 8 Si 1.86793 * 120.00006 * 157.28910 * 6 4 3 9 9 H 1.48499 * 109.47444 * 90.00021 * 8 6 4 10 10 H 1.48509 * 109.47121 * 210.00074 * 8 6 4 11 11 H 1.48496 * 109.47214 * 329.99601 * 8 6 4 12 12 C 1.46502 * 120.00122 * 84.51923 * 3 2 1 13 13 H 1.09002 * 109.32836 * 359.78381 * 12 3 2 14 14 C 1.53066 * 109.40105 * 239.99590 * 12 3 2 15 15 C 1.53345 * 108.42498 * 190.96576 * 14 12 3 16 16 C 1.52917 * 108.67112 * 67.53306 * 15 14 12 17 17 N 1.45762 * 110.32512 * 309.34799 * 16 15 14 18 18 C 1.32960 * 124.40698 * 18.96702 * 17 16 15 19 19 O 1.21283 * 118.35809 * 177.85064 * 18 17 16 20 20 H 1.09002 * 109.46740 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.46932 * 300.00023 * 1 2 3 22 22 H 1.08996 * 109.47409 * 60.00157 * 1 2 3 23 23 H 1.08996 * 109.47116 * 240.00740 * 2 1 3 24 24 H 1.08996 * 109.47409 * 119.99843 * 2 1 3 25 25 H 0.97000 * 119.99492 * 180.02562 * 7 6 4 26 26 H 1.09006 * 109.67147 * 71.23780 * 14 12 3 27 27 H 1.09001 * 109.67339 * 310.70536 * 14 12 3 28 28 H 1.08998 * 109.60570 * 307.77896 * 15 14 12 29 29 H 1.08994 * 109.73741 * 187.36652 * 15 14 12 30 30 H 1.09005 * 109.30568 * 69.55634 * 16 15 14 31 31 H 1.08998 * 109.30657 * 189.13931 * 16 15 14 32 32 H 0.96998 * 117.94555 * 198.97065 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3533 1.9891 -1.1805 5 1 2.1929 3.0496 -1.3064 6 6 2.8993 1.2421 -2.2153 7 7 3.5037 0.1020 -1.9560 8 14 2.7762 1.8549 -3.9755 9 1 3.9587 2.6959 -4.2908 10 1 2.7327 0.6948 -4.9017 11 1 1.5391 2.6610 -4.1336 12 6 2.1481 2.1124 1.2629 13 1 1.8333 1.4702 2.0855 14 6 1.2606 3.3588 1.2225 15 6 1.6153 4.2455 2.4223 16 6 3.0302 4.7915 2.2262 17 7 3.9524 3.7071 1.9127 18 6 3.5818 2.5121 1.4628 19 8 4.4456 1.7025 1.1993 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.8933 -0.5137 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 3.8856 -0.4198 -2.6791 26 1 0.2125 3.0651 1.2805 27 1 1.4382 3.9059 0.2966 28 1 1.5747 3.6554 3.3378 29 1 0.9098 5.0736 2.4893 30 1 3.0285 5.5110 1.4073 31 1 3.3550 5.2875 3.1408 32 1 4.9008 3.8658 2.0403 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691983029.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:32 Heat of formation + Delta-G solvation = -41.397675 kcal Electronic energy + Delta-G solvation = -15091.414265 eV Core-core repulsion = 12665.473107 eV Total energy + Delta-G solvation = -2425.941158 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.05206 -37.60183 -37.00249 -33.84696 -32.81903 -31.07522 -29.02387 -26.35114 -24.43650 -23.48569 -22.18239 -20.17661 -18.26475 -17.97335 -17.13747 -16.72447 -16.17560 -15.56457 -15.29458 -14.87546 -14.46183 -14.10058 -13.96324 -13.64472 -13.40153 -12.86489 -12.51887 -12.49422 -12.22153 -12.07766 -11.98755 -11.95664 -11.48596 -11.39077 -10.62921 -10.29943 -9.81110 -8.56957 -7.79370 -5.37732 1.43399 1.44793 1.55155 1.97768 2.51841 2.63887 3.28981 3.62297 3.99725 4.11881 4.19428 4.30806 4.50553 4.57801 4.71442 4.89134 4.92801 4.99254 5.04981 5.15936 5.19478 5.29850 5.52610 5.53382 5.69482 5.87492 6.13741 6.43866 6.64119 7.16942 7.61960 7.86390 8.37761 9.18528 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.029181 B = 0.012633 C = 0.011353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.287151 B = 2215.959998 C = 2465.712012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.137 3.863 3 N -0.573 5.573 4 C -0.258 4.258 5 H 0.062 0.938 6 C -0.045 4.045 7 N -0.913 5.913 8 Si 0.958 3.042 9 H -0.291 1.291 10 H -0.292 1.292 11 H -0.263 1.263 12 C 0.151 3.849 13 H 0.083 0.917 14 C -0.120 4.120 15 C -0.125 4.125 16 C 0.109 3.891 17 N -0.724 5.724 18 C 0.494 3.506 19 O -0.598 6.598 20 H 0.057 0.943 21 H 0.054 0.946 22 H 0.039 0.961 23 H 0.064 0.936 24 H 0.011 0.989 25 H 0.246 0.754 26 H 0.077 0.923 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.113 0.887 30 H 0.064 0.936 31 H 0.106 0.894 32 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.653 9.610 8.948 14.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.011 3.989 3 N -0.293 5.293 4 C -0.388 4.388 5 H 0.080 0.920 6 C -0.242 4.242 7 N -0.556 5.556 8 Si 0.785 3.215 9 H -0.218 1.218 10 H -0.218 1.218 11 H -0.187 1.187 12 C 0.040 3.960 13 H 0.101 0.899 14 C -0.159 4.159 15 C -0.163 4.163 16 C -0.014 4.014 17 N -0.376 5.376 18 C 0.280 3.720 19 O -0.477 6.477 20 H 0.076 0.924 21 H 0.073 0.927 22 H 0.058 0.942 23 H 0.082 0.918 24 H 0.030 0.970 25 H 0.056 0.944 26 H 0.096 0.904 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.131 0.869 30 H 0.082 0.918 31 H 0.124 0.876 32 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -6.409 9.015 8.671 14.055 hybrid contribution 0.975 -0.112 -1.099 1.474 sum -5.434 8.904 7.572 12.890 Atomic orbital electron populations 1.22093 0.96950 1.00396 1.00845 1.20939 0.92513 0.85431 1.00003 1.44008 1.72961 1.11743 1.00561 1.19134 1.34921 0.93944 0.90831 0.91998 1.25908 0.96982 0.98437 1.02873 1.70259 1.37052 1.17010 1.31310 0.85449 0.78129 0.77231 0.80647 1.21824 1.21769 1.18693 1.20752 0.89198 0.95451 0.90559 0.89885 1.21975 0.99676 0.95320 0.98938 1.21883 0.96019 1.00647 0.97784 1.21613 0.89789 0.88029 1.01951 1.45671 1.11223 1.13652 1.67080 1.21878 0.94088 0.81517 0.74490 1.90687 1.53494 1.52210 1.51305 0.92432 0.92740 0.94155 0.91771 0.97017 0.94443 0.90439 0.92830 0.90523 0.86909 0.91813 0.87575 0.77739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.60 10.23 71.98 0.74 -4.86 16 2 C 0.14 6.83 5.90 86.38 0.51 7.34 16 3 N -0.57 -29.32 2.15 -682.98 -1.47 -30.79 16 4 C -0.26 -14.45 8.53 84.03 0.72 -13.73 16 5 H 0.06 3.39 6.66 -2.91 -0.02 3.37 16 6 C -0.04 -2.62 4.91 84.86 0.42 -2.20 16 7 N -0.91 -57.55 11.33 21.65 0.25 -57.30 16 8 Si 0.96 46.36 29.61 68.60 2.03 48.39 16 9 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 10 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 11 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 12 C 0.15 6.38 2.84 44.10 0.13 6.51 16 13 H 0.08 3.31 7.86 -2.39 -0.02 3.29 16 14 C -0.12 -3.80 5.44 30.73 0.17 -3.63 16 15 C -0.13 -2.65 6.02 30.68 0.18 -2.47 16 16 C 0.11 2.40 7.18 86.49 0.62 3.02 16 17 N -0.72 -24.17 5.42 -467.82 -2.54 -26.71 16 18 C 0.49 22.47 6.85 87.77 0.60 23.07 16 19 O -0.60 -34.83 17.48 -3.04 -0.05 -34.89 16 20 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 21 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 22 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.06 3.71 5.32 -2.39 -0.01 3.70 16 24 H 0.01 0.57 8.04 -2.39 -0.02 0.55 16 25 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 26 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 27 H 0.05 1.93 6.59 -2.39 -0.02 1.92 16 28 H 0.08 1.51 8.12 -2.39 -0.02 1.49 16 29 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.39 12.22 8.79 -92.71 -0.81 11.41 16 Total: -1.00 -76.70 261.89 2.59 -74.11 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.29 Total: 14.14 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: 4.08 Total: 13.05 kcal Atomic # 7 Polarization: -111.04 SS G_CDS: -3.76 Total: -114.80 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -0.05 Total: -34.89 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -76.70 2.59 -74.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691983029.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.709 kcal (2) G-P(sol) polarization free energy of solvation -76.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds