Wall clock time and date at job start Mon Mar 30 2020 02:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46498 * 120.00310 * 2 1 4 4 C 1.50695 * 109.47536 * 270.00431 * 3 2 1 5 5 H 1.08009 * 119.99680 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00529 * 180.02562 * 4 3 2 7 7 N 1.31507 * 120.00142 * 180.02562 * 6 4 3 8 8 Si 1.86801 * 119.99548 * 359.97438 * 6 4 3 9 9 H 1.48502 * 109.46785 * 90.00635 * 8 6 4 10 10 H 1.48501 * 109.46770 * 210.00120 * 8 6 4 11 11 H 1.48496 * 109.47694 * 330.00430 * 8 6 4 12 12 C 1.34777 * 119.99597 * 180.02562 * 2 1 3 13 13 O 1.21288 * 119.99799 * 180.02562 * 12 2 1 14 14 C 1.50695 * 120.00498 * 0.02562 * 12 2 1 15 15 C 1.53776 * 113.61916 * 180.02562 * 14 12 2 16 16 C 1.53778 * 87.08414 * 89.11266 * 15 14 12 17 17 N 1.46905 * 113.61486 * 139.98223 * 16 15 14 18 18 C 1.53780 * 113.61434 * 277.49841 * 14 12 2 19 19 H 1.09004 * 109.47500 * 269.99990 * 1 2 3 20 20 H 1.09006 * 109.47282 * 29.99668 * 1 2 3 21 21 H 1.08998 * 109.47472 * 149.99904 * 1 2 3 22 22 H 1.09002 * 109.46929 * 30.00148 * 3 2 1 23 23 H 1.09003 * 109.47100 * 149.99693 * 3 2 1 24 24 H 0.97006 * 120.00161 * 179.97438 * 7 6 4 25 25 H 1.08999 * 112.85212 * 48.79882 * 14 12 2 26 26 H 1.09008 * 113.61416 * 334.56895 * 15 14 12 27 27 H 1.08997 * 113.61952 * 203.66743 * 15 14 12 28 28 H 1.09002 * 113.61610 * 270.80493 * 16 15 14 29 29 H 1.00901 * 110.99869 * 180.02562 * 17 16 15 30 30 H 1.00896 * 110.99543 * 303.95673 * 17 16 15 31 31 H 1.08998 * 113.61718 * 156.33218 * 18 14 12 32 32 H 1.09006 * 113.61690 * 25.42753 * 18 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4207 5 1 2.0980 1.0958 -2.2417 6 6 3.1269 2.8774 -1.6727 7 7 3.3456 3.2574 -2.9126 8 14 3.7340 3.9285 -0.2528 9 1 5.1071 3.5066 0.1236 10 1 3.7499 5.3552 -0.6646 11 1 2.8276 3.7594 0.9113 12 6 2.1387 -1.1672 -0.0005 13 8 3.3516 -1.1673 -0.0001 14 6 1.3853 -2.4723 -0.0017 15 6 2.2974 -3.7103 -0.0015 16 6 2.2690 -3.6339 1.5341 17 7 2.1726 -4.9464 2.1869 18 6 0.9175 -2.9148 1.3948 19 1 -0.3634 0.0000 1.0277 20 1 -0.3634 0.8901 -0.5138 21 1 -0.3634 -0.8899 -0.5138 22 1 1.6084 2.0283 0.5139 23 1 3.1499 1.1383 0.5139 24 1 3.8225 4.0833 -3.0898 25 1 0.6010 -2.5076 -0.7578 26 1 3.2830 -3.5266 -0.4296 27 1 1.8204 -4.6043 -0.4032 28 1 3.0565 -3.0087 1.9548 29 1 2.1565 -4.8504 3.1912 30 1 1.3648 -5.4546 1.8595 31 1 0.0630 -3.5912 1.3751 32 1 0.7887 -2.0887 2.0943 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693572784.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:22 Heat of formation + Delta-G solvation = -12.442987 kcal Electronic energy + Delta-G solvation = -14406.483835 eV Core-core repulsion = 11981.798247 eV Total energy + Delta-G solvation = -2424.685589 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.17234 -37.42896 -34.88142 -32.58632 -31.85893 -28.65054 -26.06458 -25.57435 -24.64735 -22.16314 -20.21241 -17.86536 -16.96778 -16.64736 -15.96910 -15.44932 -15.21860 -14.50992 -13.93885 -13.56732 -12.74724 -12.64035 -12.49362 -12.40665 -12.10427 -11.96554 -11.56744 -11.38238 -10.90334 -10.59745 -10.47540 -10.31559 -10.12079 -9.54108 -8.99447 -8.67866 -8.59201 -7.70248 -6.08870 -4.07737 3.28837 3.29138 3.34811 3.36575 3.81591 4.39336 4.43308 4.69267 4.75086 4.88488 4.96896 5.22922 5.37350 5.56567 5.65639 5.71581 5.84263 5.88128 6.04454 6.16253 6.24063 6.42276 6.69754 6.93728 7.05750 7.33741 7.37541 7.60698 8.25387 8.46891 8.92850 8.99724 9.51343 11.04597 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.051511 B = 0.007601 C = 0.007470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.441404 B = 3683.048548 C = 3747.396527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.595 5.595 3 C 0.215 3.785 4 C -0.529 4.529 5 H 0.074 0.926 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.523 3.477 13 O -0.537 6.537 14 C -0.135 4.135 15 C -0.113 4.113 16 C 0.073 3.927 17 N -0.839 5.839 18 C -0.161 4.161 19 H 0.043 0.957 20 H 0.074 0.926 21 H 0.061 0.939 22 H 0.029 0.971 23 H 0.036 0.964 24 H 0.265 0.735 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.107 0.893 29 H 0.339 0.661 30 H 0.338 0.662 31 H 0.085 0.915 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.139 -11.292 9.524 16.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.327 5.327 3 C 0.094 3.906 4 C -0.568 4.568 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.536 5.536 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.191 1.191 12 C 0.309 3.691 13 O -0.415 6.415 14 C -0.157 4.157 15 C -0.152 4.152 16 C -0.039 4.039 17 N -0.366 5.366 18 C -0.202 4.202 19 H 0.062 0.938 20 H 0.093 0.907 21 H 0.079 0.921 22 H 0.047 0.953 23 H 0.054 0.946 24 H 0.075 0.925 25 H 0.115 0.885 26 H 0.104 0.896 27 H 0.102 0.898 28 H 0.125 0.875 29 H 0.151 0.849 30 H 0.151 0.849 31 H 0.103 0.897 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.696 -11.275 9.078 15.949 hybrid contribution -0.782 1.137 0.808 1.599 sum -7.478 -10.138 9.886 16.013 Atomic orbital electron populations 1.21657 0.80994 1.02930 1.00321 1.47786 1.06265 1.07025 1.71621 1.19668 0.92440 0.80075 0.98382 1.21333 1.36998 1.07168 0.91269 0.90790 1.24861 0.95224 0.97351 0.95598 1.69897 1.41472 1.23570 1.18660 0.86839 0.80136 0.79746 0.82898 1.19874 1.21030 1.19112 1.19805 0.87709 0.84508 0.77028 1.90661 1.13799 1.87054 1.49942 1.22292 0.99911 0.94216 0.99267 1.22909 1.01089 0.95553 0.95637 1.22938 0.96186 0.89178 0.95564 1.58674 1.48549 1.18817 1.10598 1.23717 0.99074 1.01139 0.96226 0.93817 0.90675 0.92080 0.95269 0.94576 0.92546 0.88463 0.89557 0.89778 0.87504 0.84869 0.84929 0.89672 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 10.25 59.84 0.61 1.94 16 2 N -0.60 -12.44 2.86 -182.96 -0.52 -12.96 16 3 C 0.21 5.34 4.23 -5.20 -0.02 5.32 16 4 C -0.53 -15.45 9.94 -34.44 -0.34 -15.79 16 5 H 0.07 2.37 8.06 -52.48 -0.42 1.95 16 6 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 7 N -0.90 -27.97 13.96 55.43 0.77 -27.19 16 8 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 9 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 12 C 0.52 10.77 6.93 -10.99 -0.08 10.69 16 13 O -0.54 -13.35 15.33 5.55 0.09 -13.26 16 14 C -0.13 -2.00 3.16 -90.96 -0.29 -2.29 16 15 C -0.11 -1.60 7.24 -25.92 -0.19 -1.79 16 16 C 0.07 0.95 4.66 -66.93 -0.31 0.63 16 17 N -0.84 -8.69 9.64 -4.00 -0.04 -8.72 16 18 C -0.16 -1.88 7.35 -25.95 -0.19 -2.07 16 19 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 20 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 21 H 0.06 0.80 6.21 -51.93 -0.32 0.48 16 22 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 23 H 0.04 0.96 6.85 -51.93 -0.36 0.60 16 24 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 25 H 0.10 1.29 6.95 -51.93 -0.36 0.93 16 26 H 0.09 1.45 7.43 -51.92 -0.39 1.07 16 27 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.11 1.64 8.07 -51.93 -0.42 1.22 16 29 H 0.34 2.95 9.08 -39.29 -0.36 2.59 16 30 H 0.34 2.86 8.84 -39.29 -0.35 2.51 16 31 H 0.08 0.78 8.03 -51.93 -0.42 0.36 16 32 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 LS Contribution 266.62 15.07 4.02 4.02 Total: -1.00 -33.95 266.62 -5.87 -39.81 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -4.61 Total: 2.52 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -0.90 Total: -1.32 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: 0.21 Total: -48.88 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.09 Total: -13.26 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -33.95 -5.87 -39.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693572784.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.372 kcal (2) G-P(sol) polarization free energy of solvation -33.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds