Wall clock time and date at job start Mon Mar 30 2020 02:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46498 * 120.00310 * 2 1 4 4 C 1.50695 * 109.47536 * 270.00431 * 3 2 1 5 5 H 1.08009 * 119.99680 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00529 * 180.02562 * 4 3 2 7 7 N 1.31507 * 120.00142 * 180.02562 * 6 4 3 8 8 Si 1.86801 * 119.99548 * 359.97438 * 6 4 3 9 9 H 1.48502 * 109.46785 * 90.00635 * 8 6 4 10 10 H 1.48501 * 109.46770 * 210.00120 * 8 6 4 11 11 H 1.48496 * 109.47694 * 330.00430 * 8 6 4 12 12 C 1.34777 * 119.99597 * 180.02562 * 2 1 3 13 13 O 1.21288 * 119.99799 * 180.02562 * 12 2 1 14 14 C 1.50695 * 120.00498 * 0.02562 * 12 2 1 15 15 C 1.53776 * 113.61916 * 180.02562 * 14 12 2 16 16 C 1.53778 * 87.08414 * 89.11266 * 15 14 12 17 17 N 1.46905 * 113.61486 * 139.98223 * 16 15 14 18 18 C 1.53780 * 113.61434 * 277.49841 * 14 12 2 19 19 H 1.09004 * 109.47500 * 269.99990 * 1 2 3 20 20 H 1.09006 * 109.47282 * 29.99668 * 1 2 3 21 21 H 1.08998 * 109.47472 * 149.99904 * 1 2 3 22 22 H 1.09002 * 109.46929 * 30.00148 * 3 2 1 23 23 H 1.09003 * 109.47100 * 149.99693 * 3 2 1 24 24 H 0.97006 * 120.00161 * 179.97438 * 7 6 4 25 25 H 1.08999 * 112.85212 * 48.79882 * 14 12 2 26 26 H 1.09008 * 113.61416 * 334.56895 * 15 14 12 27 27 H 1.08997 * 113.61952 * 203.66743 * 15 14 12 28 28 H 1.09002 * 113.61610 * 270.80493 * 16 15 14 29 29 H 1.00901 * 110.99869 * 180.02562 * 17 16 15 30 30 H 1.00896 * 110.99543 * 303.95673 * 17 16 15 31 31 H 1.08998 * 113.61718 * 156.33218 * 18 14 12 32 32 H 1.09006 * 113.61690 * 25.42753 * 18 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4207 5 1 2.0980 1.0958 -2.2417 6 6 3.1269 2.8774 -1.6727 7 7 3.3456 3.2574 -2.9126 8 14 3.7340 3.9285 -0.2528 9 1 5.1071 3.5066 0.1236 10 1 3.7499 5.3552 -0.6646 11 1 2.8276 3.7594 0.9113 12 6 2.1387 -1.1672 -0.0005 13 8 3.3516 -1.1673 -0.0001 14 6 1.3853 -2.4723 -0.0017 15 6 2.2974 -3.7103 -0.0015 16 6 2.2690 -3.6339 1.5341 17 7 2.1726 -4.9464 2.1869 18 6 0.9175 -2.9148 1.3948 19 1 -0.3634 0.0000 1.0277 20 1 -0.3634 0.8901 -0.5138 21 1 -0.3634 -0.8899 -0.5138 22 1 1.6084 2.0283 0.5139 23 1 3.1499 1.1383 0.5139 24 1 3.8225 4.0833 -3.0898 25 1 0.6010 -2.5076 -0.7578 26 1 3.2830 -3.5266 -0.4296 27 1 1.8204 -4.6043 -0.4032 28 1 3.0565 -3.0087 1.9548 29 1 2.1565 -4.8504 3.1912 30 1 1.3648 -5.4546 1.8595 31 1 0.0630 -3.5912 1.3751 32 1 0.7887 -2.0887 2.0943 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693572784.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:21 Heat of formation + Delta-G solvation = -39.378945 kcal Electronic energy + Delta-G solvation = -14407.651866 eV Core-core repulsion = 11981.798247 eV Total energy + Delta-G solvation = -2425.853619 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.52176 -38.79075 -36.61150 -34.72437 -32.90188 -30.57601 -27.46814 -26.61499 -26.15617 -23.86557 -21.54365 -19.30929 -19.17110 -17.97953 -17.18819 -16.86796 -16.60277 -16.21511 -15.40408 -15.10514 -14.51000 -14.00405 -13.91385 -13.68764 -13.48488 -13.30706 -13.23104 -12.77085 -12.57275 -12.39692 -12.07517 -11.78153 -11.65781 -11.35466 -10.86163 -10.60911 -9.52437 -9.41553 -8.36927 -6.42496 1.30262 1.34822 1.43215 1.74615 2.28418 2.30750 2.97341 3.49052 3.58283 3.68767 3.73824 3.94093 4.21950 4.42766 4.60850 4.67072 4.74545 4.79367 4.83955 4.91256 4.97962 5.01436 5.11964 5.39392 5.42931 5.60094 6.20890 6.25361 6.58658 6.68507 6.71065 7.18480 7.41011 8.80230 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.051511 B = 0.007601 C = 0.007470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.441404 B = 3683.048548 C = 3747.396527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.605 5.605 3 C 0.222 3.778 4 C -0.539 4.539 5 H 0.027 0.973 6 C 0.010 3.990 7 N -0.945 5.945 8 Si 0.950 3.050 9 H -0.277 1.277 10 H -0.272 1.272 11 H -0.237 1.237 12 C 0.510 3.490 13 O -0.595 6.595 14 C -0.134 4.134 15 C -0.116 4.116 16 C 0.074 3.926 17 N -0.839 5.839 18 C -0.135 4.135 19 H 0.079 0.921 20 H 0.064 0.936 21 H 0.089 0.911 22 H 0.051 0.949 23 H 0.017 0.983 24 H 0.269 0.731 25 H 0.121 0.879 26 H 0.046 0.954 27 H 0.116 0.884 28 H 0.072 0.928 29 H 0.350 0.650 30 H 0.353 0.647 31 H 0.127 0.873 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.242 -12.163 11.697 19.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.336 5.336 3 C 0.100 3.900 4 C -0.577 4.577 5 H 0.045 0.955 6 C -0.188 4.188 7 N -0.585 5.585 8 Si 0.772 3.228 9 H -0.203 1.203 10 H -0.197 1.197 11 H -0.160 1.160 12 C 0.299 3.701 13 O -0.476 6.476 14 C -0.156 4.156 15 C -0.154 4.154 16 C -0.038 4.038 17 N -0.370 5.370 18 C -0.175 4.175 19 H 0.097 0.903 20 H 0.083 0.917 21 H 0.108 0.892 22 H 0.069 0.931 23 H 0.035 0.965 24 H 0.078 0.922 25 H 0.139 0.861 26 H 0.065 0.935 27 H 0.134 0.866 28 H 0.091 0.909 29 H 0.164 0.836 30 H 0.168 0.832 31 H 0.145 0.855 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.868 -12.174 11.267 18.809 hybrid contribution -0.128 1.326 0.039 1.333 sum -8.996 -10.847 11.306 18.067 Atomic orbital electron populations 1.21972 0.77572 1.03912 1.02888 1.47926 1.08487 1.05828 1.71323 1.19340 0.92714 0.82667 0.95289 1.21569 1.36968 1.06810 0.92397 0.95499 1.25882 0.95221 0.98955 0.98734 1.70049 1.42642 1.24518 1.21327 0.85690 0.79519 0.77795 0.79789 1.20273 1.19745 1.16032 1.20901 0.87494 0.86253 0.75406 1.90625 1.16578 1.88052 1.52351 1.22256 1.00050 0.90821 1.02450 1.22986 0.99279 0.96430 0.96708 1.22669 0.96334 0.90161 0.94640 1.58557 1.49648 1.17384 1.11379 1.23693 0.99387 1.01229 0.93207 0.90268 0.91700 0.89228 0.93077 0.96515 0.92189 0.86078 0.93488 0.86614 0.90930 0.83620 0.83189 0.85510 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.23 10.25 127.77 1.31 3.54 16 2 N -0.61 -24.93 2.86 -851.14 -2.43 -27.36 16 3 C 0.22 11.08 4.23 85.63 0.36 11.44 16 4 C -0.54 -32.47 9.94 25.60 0.25 -32.21 16 5 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 6 C 0.01 0.61 5.47 84.65 0.46 1.07 16 7 N -0.95 -60.70 13.96 21.44 0.30 -60.40 16 8 Si 0.95 45.10 27.47 68.60 1.88 46.98 16 9 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.24 -10.07 6.54 99.48 0.65 -9.42 16 12 C 0.51 21.09 6.93 87.66 0.61 21.70 16 13 O -0.59 -30.90 15.33 -3.05 -0.05 -30.94 16 14 C -0.13 -3.69 3.16 -11.02 -0.03 -3.73 16 15 C -0.12 -3.11 7.24 31.12 0.23 -2.89 16 16 C 0.07 1.80 4.66 45.42 0.21 2.01 16 17 N -0.84 -15.03 9.64 -166.57 -1.61 -16.63 16 18 C -0.14 -2.63 7.35 31.10 0.23 -2.40 16 19 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 20 H 0.06 1.98 8.07 -2.38 -0.02 1.96 16 21 H 0.09 2.02 6.21 -2.39 -0.01 2.01 16 22 H 0.05 2.32 7.13 -2.39 -0.02 2.30 16 23 H 0.02 0.90 6.85 -2.39 -0.02 0.88 16 24 H 0.27 16.00 8.31 -92.70 -0.77 15.23 16 25 H 0.12 2.77 6.95 -2.39 -0.02 2.76 16 26 H 0.05 1.64 7.43 -2.38 -0.02 1.62 16 27 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.07 2.27 8.07 -2.39 -0.02 2.25 16 29 H 0.35 5.12 9.08 -89.69 -0.81 4.31 16 30 H 0.35 4.52 8.84 -89.70 -0.79 3.72 16 31 H 0.13 1.51 8.03 -2.39 -0.02 1.49 16 32 H 0.07 1.41 8.09 -2.38 -0.02 1.39 16 Total: -1.00 -78.88 266.62 1.19 -77.69 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -0.53 Total: 12.14 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: 3.63 Total: -1.47 kcal Atomic # 7 Polarization: -100.65 SS G_CDS: -3.74 Total: -104.39 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -0.05 Total: -30.94 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.88 Total: 46.98 kcal Total: -78.88 1.19 -77.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693572784.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.309 kcal (2) G-P(sol) polarization free energy of solvation -78.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds