Wall clock time and date at job start Mon Mar 30 2020 02:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46755 * 90.00221 * 8 6 4 10 10 H 1.48498 * 109.46866 * 210.00208 * 8 6 4 11 11 H 1.48496 * 109.47178 * 330.00271 * 8 6 4 12 12 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 13 13 C 1.34775 * 119.99693 * 275.00198 * 12 2 1 14 14 O 1.21274 * 120.00425 * 359.97438 * 13 12 2 15 15 C 1.50706 * 119.99541 * 179.97438 * 13 12 2 16 16 C 1.53782 * 113.61030 * 279.13341 * 15 13 12 17 17 C 1.53962 * 87.01677 * 220.05111 * 16 15 13 18 18 N 1.46907 * 113.53547 * 270.81384 * 17 16 15 19 19 C 1.53781 * 87.11132 * 25.36304 * 17 16 15 20 20 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 21 21 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 22 22 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 23 23 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 24 24 H 0.97000 * 120.00117 * 94.99845 * 12 2 1 25 25 H 1.09000 * 112.84915 * 50.33029 * 15 13 12 26 26 H 1.08994 * 113.61779 * 334.56339 * 16 15 13 27 27 H 1.08994 * 113.61532 * 105.47693 * 16 15 13 28 28 H 1.08996 * 113.74254 * 139.94446 * 17 16 15 29 29 H 1.00899 * 110.99717 * 277.49594 * 18 17 16 30 30 H 1.00899 * 111.00224 * 41.44708 * 18 17 16 31 31 H 1.09002 * 113.61683 * 220.09050 * 19 17 16 32 32 H 1.09003 * 113.61141 * 89.19014 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7120 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8590 1.1586 2.4115 15 6 2.6489 -0.7288 3.5878 16 6 1.5655 -1.5445 4.3128 17 6 2.1845 -1.0441 5.6307 18 7 3.2524 -1.9125 6.1442 19 6 2.7032 0.1665 4.8369 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 0.7089 1.1613 -3.4844 24 1 2.2491 -1.6318 1.1527 25 1 3.5687 -1.2858 3.4094 26 1 0.5537 -1.1783 4.1391 27 1 1.6582 -2.6206 4.1668 28 1 1.4477 -0.7845 6.3909 29 1 2.8690 -2.6921 6.6573 30 1 3.8505 -2.2307 5.3966 31 1 3.7131 0.4696 5.1132 32 1 2.0030 1.0013 4.8066 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693576491.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:13 Heat of formation + Delta-G solvation = -53.189348 kcal Electronic energy + Delta-G solvation = -14201.117646 eV Core-core repulsion = 11774.665162 eV Total energy + Delta-G solvation = -2426.452483 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.28821 -39.02715 -36.66167 -34.31854 -32.51411 -30.86232 -27.38694 -26.62422 -26.43332 -23.04024 -21.34042 -20.02234 -19.09763 -17.86733 -17.20828 -16.60270 -16.31645 -15.86268 -15.62061 -14.88446 -14.52002 -14.15885 -13.86759 -13.64618 -13.30271 -13.04846 -12.85665 -12.75133 -12.45045 -12.31373 -12.15783 -11.52024 -11.41546 -11.12649 -10.67354 -10.51311 -9.76162 -9.60068 -8.19354 -6.37580 1.43680 1.44832 1.55485 1.80799 2.35125 2.66844 3.10873 3.47997 3.53138 3.71428 3.85197 4.04446 4.33215 4.63565 4.73425 4.81623 4.88275 4.90058 4.99957 5.06411 5.10854 5.33437 5.41389 5.59883 5.66815 5.89322 6.07929 6.26096 6.66306 6.70722 6.98036 7.30723 7.57312 8.87100 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.058672 B = 0.006618 C = 0.006303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.115466 B = 4229.813245 C = 4441.155418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.268 3.732 3 H -0.006 1.006 4 C -0.548 4.548 5 H 0.074 0.926 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.975 3.025 9 H -0.270 1.270 10 H -0.286 1.286 11 H -0.264 1.264 12 N -0.704 5.704 13 C 0.503 3.497 14 O -0.605 6.605 15 C -0.134 4.134 16 C -0.149 4.149 17 C 0.089 3.911 18 N -0.830 5.830 19 C -0.117 4.117 20 H 0.066 0.934 21 H 0.010 0.990 22 H 0.041 0.959 23 H 0.266 0.734 24 H 0.404 0.596 25 H 0.132 0.868 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.357 0.643 30 H 0.348 0.652 31 H 0.077 0.923 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.933 -9.456 12.475 15.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.164 3.836 3 H 0.012 0.988 4 C -0.586 4.586 5 H 0.092 0.908 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.800 3.200 9 H -0.195 1.195 10 H -0.212 1.212 11 H -0.188 1.188 12 N -0.352 5.352 13 C 0.290 3.710 14 O -0.487 6.487 15 C -0.155 4.155 16 C -0.189 4.189 17 C -0.024 4.024 18 N -0.360 5.360 19 C -0.156 4.156 20 H 0.084 0.916 21 H 0.029 0.971 22 H 0.060 0.940 23 H 0.075 0.925 24 H 0.239 0.761 25 H 0.149 0.851 26 H 0.091 0.909 27 H 0.113 0.887 28 H 0.119 0.881 29 H 0.172 0.828 30 H 0.162 0.838 31 H 0.096 0.904 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.893 -7.889 12.789 15.302 hybrid contribution -0.304 -0.871 -1.854 2.071 sum 2.589 -8.760 10.935 14.248 Atomic orbital electron populations 1.21882 0.98355 0.99402 0.99428 1.18343 0.91137 0.91820 0.82310 0.98798 1.21548 1.32658 1.13559 0.90811 0.90838 1.25847 0.94854 0.95565 1.02462 1.70063 1.37058 1.23946 1.24650 0.85297 0.78984 0.78002 0.77759 1.19519 1.21216 1.18778 1.46301 1.65048 1.14125 1.09698 1.21317 0.77208 0.86900 0.85533 1.90609 1.53585 1.18630 1.85922 1.22888 1.01791 0.99866 0.90944 1.23693 0.97506 1.00416 0.97319 1.22329 0.92872 0.93355 0.93839 1.58632 1.20960 1.25653 1.30787 1.22923 1.02633 0.97107 0.92905 0.91560 0.97125 0.94028 0.92522 0.76098 0.85071 0.90882 0.88662 0.88082 0.82842 0.83807 0.90410 0.90728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.84 9.26 71.98 0.67 -6.17 16 2 C 0.27 14.22 2.56 44.25 0.11 14.33 16 3 H -0.01 -0.37 7.58 -2.39 -0.02 -0.39 16 4 C -0.55 -29.34 8.73 25.60 0.22 -29.12 16 5 H 0.07 3.66 7.74 -2.91 -0.02 3.63 16 6 C 0.01 0.69 5.30 84.65 0.45 1.13 16 7 N -0.92 -53.40 11.32 21.45 0.24 -53.15 16 8 Si 0.98 42.11 29.54 68.60 2.03 44.13 16 9 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 10 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 12 N -0.70 -29.68 5.07 -446.08 -2.26 -31.94 16 13 C 0.50 20.43 7.32 87.66 0.64 21.07 16 14 O -0.61 -30.71 15.57 -3.01 -0.05 -30.76 16 15 C -0.13 -3.63 3.80 -11.01 -0.04 -3.67 16 16 C -0.15 -3.18 7.36 31.18 0.23 -2.96 16 17 C 0.09 1.70 5.18 45.50 0.24 1.93 16 18 N -0.83 -12.48 9.63 -166.23 -1.60 -14.08 16 19 C -0.12 -3.07 7.19 31.12 0.22 -2.84 16 20 H 0.07 3.75 6.07 -2.39 -0.01 3.74 16 21 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 22 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 23 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 24 H 0.40 14.20 8.54 -92.71 -0.79 13.41 16 25 H 0.13 2.86 7.72 -2.39 -0.02 2.84 16 26 H 0.07 1.83 8.09 -2.39 -0.02 1.81 16 27 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.36 3.82 9.08 -89.69 -0.81 3.01 16 30 H 0.35 4.68 8.15 -89.70 -0.73 3.95 16 31 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.07 2.33 7.45 -2.39 -0.02 2.32 16 Total: -1.00 -68.45 268.59 -0.09 -68.54 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: -1.19 Total: 23.54 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: 2.74 Total: -6.29 kcal Atomic # 7 Polarization: -95.55 SS G_CDS: -3.62 Total: -99.17 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -0.05 Total: -30.76 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Total: -68.45 -0.09 -68.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693576491.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.354 kcal (2) G-P(sol) polarization free energy of solvation -68.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds