Wall clock time and date at job start Mon Mar 30 2020 02:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 C 1.50706 * 109.46812 * 119.99589 * 2 1 3 5 5 H 1.07998 * 119.99769 * 120.00769 * 4 2 1 6 6 C 1.37877 * 120.00286 * 299.99911 * 4 2 1 7 7 N 1.31511 * 120.00035 * 179.97438 * 6 4 2 8 8 Si 1.86801 * 119.99998 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.46865 * 89.99417 * 8 6 4 10 10 H 1.48498 * 109.47233 * 209.99802 * 8 6 4 11 11 H 1.48508 * 109.47028 * 329.99943 * 8 6 4 12 12 N 1.46499 * 109.47341 * 239.99755 * 2 1 3 13 13 C 1.34777 * 119.99665 * 85.27876 * 12 2 1 14 14 O 1.21283 * 119.99990 * 359.71991 * 13 12 2 15 15 C 1.50698 * 119.99538 * 179.72653 * 13 12 2 16 16 H 1.08998 * 112.85671 * 48.79915 * 15 13 12 17 17 C 1.53783 * 113.61417 * 179.97438 * 15 13 12 18 18 C 1.53777 * 87.08330 * 139.97615 * 17 15 13 19 19 H 1.09002 * 113.61468 * 89.19869 * 18 17 15 20 20 N 1.46901 * 113.61979 * 220.02020 * 18 17 15 21 21 C 1.53784 * 87.08320 * 334.57014 * 18 17 15 22 22 H 1.08996 * 109.47098 * 300.00372 * 1 2 3 23 23 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 24 24 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 25 25 H 0.97000 * 120.00229 * 179.97438 * 7 6 4 26 26 H 0.97001 * 119.99790 * 264.99588 * 12 2 1 27 27 H 1.08995 * 113.61515 * 254.52902 * 17 15 13 28 28 H 1.09008 * 113.61377 * 25.43293 * 17 15 13 29 29 H 1.00902 * 111.00520 * 180.02562 * 20 18 17 30 30 H 1.00903 * 110.99738 * 303.95775 * 20 18 17 31 31 H 1.08997 * 113.61037 * 270.88259 * 21 18 17 32 32 H 1.08993 * 113.61578 * 139.98201 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 2.1371 -0.8595 3.5566 8 14 0.6247 1.2792 2.6542 9 1 -0.8029 0.8727 2.6997 10 1 0.9758 1.9953 3.9068 11 1 0.8470 2.1766 1.4920 12 7 2.0184 -0.6906 -1.1961 13 6 2.1524 -0.0169 -2.3557 14 8 1.8639 1.1598 -2.4102 15 6 2.6607 -0.7259 -3.5845 16 1 2.1474 -1.6690 -3.7719 17 6 2.7553 0.1801 -4.8235 18 6 4.0782 -0.5340 -5.1475 19 1 3.9541 -1.4247 -5.7634 20 7 5.1250 0.3658 -5.6501 21 6 4.1936 -0.8339 -3.6436 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.9031 -0.5278 4.4376 26 1 2.2491 -1.6318 -1.1525 27 1 1.9703 -0.0008 -5.5577 28 1 2.8768 1.2365 -4.5837 29 1 5.9734 -0.1425 -5.8499 30 1 4.8070 0.8719 -6.4631 31 1 4.7082 -0.0548 -3.0813 32 1 4.5696 -1.8334 -3.4253 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693595319.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:25 Heat of formation + Delta-G solvation = -20.742142 kcal Electronic energy + Delta-G solvation = -14211.430641 eV Core-core repulsion = 11786.385174 eV Total energy + Delta-G solvation = -2425.045467 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.88782 -37.58418 -34.87990 -32.41141 -32.02536 -29.82998 -25.60998 -25.32115 -24.87136 -21.15619 -19.65843 -19.16561 -17.42688 -16.19927 -15.78599 -15.59963 -15.13530 -14.85990 -14.12071 -13.60925 -13.00925 -12.86099 -12.31200 -12.17546 -11.93960 -11.61374 -11.29572 -11.15193 -10.90266 -10.76802 -10.27035 -10.15413 -9.66255 -9.19324 -9.02631 -8.81264 -8.72218 -8.08378 -6.18206 -4.20287 3.25195 3.29256 3.37668 3.43092 3.99768 4.34608 4.49479 4.61591 4.67674 4.87446 4.97056 5.16911 5.44917 5.60406 5.77898 5.87261 6.09656 6.18096 6.34452 6.40904 6.42373 6.60136 6.90084 7.09350 7.24306 7.29550 7.35987 7.57337 8.20831 8.59767 8.79677 9.03024 9.43356 10.94069 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.055778 B = 0.007130 C = 0.006803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.870752 B = 3926.182233 C = 4114.994770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.235 3.765 3 H 0.048 0.952 4 C -0.533 4.533 5 H 0.080 0.920 6 C 0.077 3.923 7 N -0.894 5.894 8 Si 0.886 3.114 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.701 5.701 13 C 0.514 3.486 14 O -0.556 6.556 15 C -0.139 4.139 16 H 0.107 0.893 17 C -0.109 4.109 18 C 0.056 3.944 19 H 0.061 0.939 20 N -0.838 5.838 21 C -0.109 4.109 22 H 0.046 0.954 23 H 0.035 0.965 24 H 0.052 0.948 25 H 0.267 0.733 26 H 0.395 0.605 27 H 0.065 0.935 28 H 0.103 0.897 29 H 0.339 0.661 30 H 0.340 0.660 31 H 0.095 0.905 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.011 -1.718 -15.808 16.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.131 3.869 3 H 0.065 0.935 4 C -0.571 4.571 5 H 0.098 0.902 6 C -0.126 4.126 7 N -0.531 5.531 8 Si 0.716 3.284 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.187 1.187 12 N -0.348 5.348 13 C 0.299 3.701 14 O -0.435 6.435 15 C -0.161 4.161 16 H 0.125 0.875 17 C -0.147 4.147 18 C -0.056 4.056 19 H 0.079 0.921 20 N -0.367 5.367 21 C -0.147 4.147 22 H 0.065 0.935 23 H 0.054 0.946 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.228 0.772 27 H 0.084 0.916 28 H 0.122 0.878 29 H 0.151 0.849 30 H 0.153 0.847 31 H 0.114 0.886 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.737 -0.523 -14.899 15.009 hybrid contribution -0.585 -0.440 -0.524 0.900 sum 1.152 -0.963 -15.423 15.496 Atomic orbital electron populations 1.22441 0.99403 1.00766 0.99233 1.19091 0.90078 0.94710 0.83016 0.93463 1.21059 1.33133 1.14361 0.88582 0.90232 1.24836 0.95522 0.96705 0.95534 1.69870 1.45049 1.40139 0.98022 0.86869 0.80499 0.83658 0.77418 1.20342 1.22169 1.18661 1.46182 1.64950 1.13732 1.09937 1.20240 0.77973 0.87298 0.84574 1.90632 1.51477 1.16234 1.85202 1.22585 0.98112 1.00465 0.94900 0.87483 1.22907 0.95331 1.00985 0.95446 1.22829 0.92467 0.94582 0.95684 0.92139 1.58813 1.06695 1.31309 1.39934 1.22915 0.93630 1.02515 0.95667 0.93523 0.94600 0.92874 0.92327 0.77227 0.91602 0.87848 0.84929 0.84668 0.88638 0.91078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.68 8.97 37.16 0.33 -3.35 16 2 C 0.23 5.75 2.15 -69.08 -0.15 5.61 16 3 H 0.05 1.29 6.63 -51.93 -0.34 0.94 16 4 C -0.53 -14.68 9.31 -34.44 -0.32 -15.00 16 5 H 0.08 2.29 7.98 -52.49 -0.42 1.87 16 6 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 7 N -0.89 -26.79 13.96 55.43 0.77 -26.01 16 8 Si 0.89 22.18 24.37 -169.99 -4.14 18.04 16 9 H -0.28 -6.69 6.87 56.52 0.39 -6.30 16 10 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 11 H -0.26 -6.56 6.53 56.52 0.37 -6.19 16 12 N -0.70 -14.28 5.07 -54.93 -0.28 -14.56 16 13 C 0.51 9.97 7.32 -10.99 -0.08 9.89 16 14 O -0.56 -12.96 15.56 5.55 0.09 -12.87 16 15 C -0.14 -1.94 4.15 -90.96 -0.38 -2.32 16 16 H 0.11 1.24 8.14 -51.93 -0.42 0.81 16 17 C -0.11 -1.41 7.20 -25.92 -0.19 -1.59 16 18 C 0.06 0.60 4.96 -66.90 -0.33 0.27 16 19 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 20 N -0.84 -8.41 9.58 -3.98 -0.04 -8.44 16 21 C -0.11 -1.39 7.43 -25.91 -0.19 -1.58 16 22 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 23 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 26 H 0.39 7.07 8.54 -40.82 -0.35 6.72 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.10 1.62 7.43 -51.92 -0.39 1.23 16 29 H 0.34 2.75 9.08 -39.29 -0.36 2.39 16 30 H 0.34 2.87 9.07 -39.29 -0.36 2.52 16 31 H 0.10 1.46 8.09 -51.93 -0.42 1.04 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 263.23 15.07 3.97 3.97 Total: -1.00 -32.19 263.23 -5.55 -37.74 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -4.52 Total: 8.11 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -1.40 Total: -5.97 kcal Atomic # 7 Polarization: -49.47 SS G_CDS: 0.46 Total: -49.02 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.09 Total: -12.87 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.14 Total: 18.04 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -32.19 -5.55 -37.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693595319.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.997 kcal (2) G-P(sol) polarization free energy of solvation -32.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds