Wall clock time and date at job start Mon Mar 30 2020 02:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 C 1.50706 * 109.46812 * 119.99589 * 2 1 3 5 5 H 1.07998 * 119.99769 * 120.00769 * 4 2 1 6 6 C 1.37877 * 120.00286 * 299.99911 * 4 2 1 7 7 N 1.31511 * 120.00035 * 179.97438 * 6 4 2 8 8 Si 1.86801 * 119.99998 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.46865 * 89.99417 * 8 6 4 10 10 H 1.48498 * 109.47233 * 209.99802 * 8 6 4 11 11 H 1.48508 * 109.47028 * 329.99943 * 8 6 4 12 12 N 1.46499 * 109.47341 * 239.99755 * 2 1 3 13 13 C 1.34777 * 119.99665 * 85.27876 * 12 2 1 14 14 O 1.21283 * 119.99990 * 359.71991 * 13 12 2 15 15 C 1.50698 * 119.99538 * 179.72653 * 13 12 2 16 16 H 1.08998 * 112.85671 * 48.79915 * 15 13 12 17 17 C 1.53783 * 113.61417 * 179.97438 * 15 13 12 18 18 C 1.53777 * 87.08330 * 139.97615 * 17 15 13 19 19 H 1.09002 * 113.61468 * 89.19869 * 18 17 15 20 20 N 1.46901 * 113.61979 * 220.02020 * 18 17 15 21 21 C 1.53784 * 87.08320 * 334.57014 * 18 17 15 22 22 H 1.08996 * 109.47098 * 300.00372 * 1 2 3 23 23 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 24 24 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 25 25 H 0.97000 * 120.00229 * 179.97438 * 7 6 4 26 26 H 0.97001 * 119.99790 * 264.99588 * 12 2 1 27 27 H 1.08995 * 113.61515 * 254.52902 * 17 15 13 28 28 H 1.09008 * 113.61377 * 25.43293 * 17 15 13 29 29 H 1.00902 * 111.00520 * 180.02562 * 20 18 17 30 30 H 1.00903 * 110.99738 * 303.95775 * 20 18 17 31 31 H 1.08997 * 113.61037 * 270.88259 * 21 18 17 32 32 H 1.08993 * 113.61578 * 139.98201 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 2.1371 -0.8595 3.5566 8 14 0.6247 1.2792 2.6542 9 1 -0.8029 0.8727 2.6997 10 1 0.9758 1.9953 3.9068 11 1 0.8470 2.1766 1.4920 12 7 2.0184 -0.6906 -1.1961 13 6 2.1524 -0.0169 -2.3557 14 8 1.8639 1.1598 -2.4102 15 6 2.6607 -0.7259 -3.5845 16 1 2.1474 -1.6690 -3.7719 17 6 2.7553 0.1801 -4.8235 18 6 4.0782 -0.5340 -5.1475 19 1 3.9541 -1.4247 -5.7634 20 7 5.1250 0.3658 -5.6501 21 6 4.1936 -0.8339 -3.6436 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.9031 -0.5278 4.4376 26 1 2.2491 -1.6318 -1.1525 27 1 1.9703 -0.0008 -5.5577 28 1 2.8768 1.2365 -4.5837 29 1 5.9734 -0.1425 -5.8499 30 1 4.8070 0.8719 -6.4631 31 1 4.7082 -0.0548 -3.0813 32 1 4.5696 -1.8334 -3.4253 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693595319.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:25 Heat of formation + Delta-G solvation = -47.131399 kcal Electronic energy + Delta-G solvation = -14212.574965 eV Core-core repulsion = 11786.385174 eV Total energy + Delta-G solvation = -2426.189791 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.22657 -38.91605 -36.73783 -34.39502 -33.07071 -31.62127 -27.26007 -26.61703 -26.28179 -22.84461 -21.26325 -20.29711 -19.11871 -17.91891 -17.37549 -16.74851 -16.32713 -16.19327 -15.70790 -15.21961 -14.84617 -14.43853 -14.14609 -13.71187 -13.38911 -13.23198 -12.83714 -12.65535 -12.31879 -12.15520 -11.93795 -11.62494 -11.29952 -11.20856 -10.88230 -10.60106 -9.86203 -9.58745 -8.39244 -6.44877 1.25667 1.34205 1.43970 1.77109 2.25226 2.50304 2.96829 3.52212 3.62790 3.73724 3.83810 4.07749 4.24846 4.45257 4.57348 4.58150 4.70869 4.81352 4.89942 4.99133 5.03637 5.19743 5.30705 5.41928 5.43088 5.67189 6.13904 6.35970 6.56685 6.66953 6.91074 7.18839 7.49055 8.76055 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.055778 B = 0.007130 C = 0.006803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.870752 B = 3926.182233 C = 4114.994770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.239 3.761 3 H 0.017 0.983 4 C -0.533 4.533 5 H 0.057 0.943 6 C 0.029 3.971 7 N -0.933 5.933 8 Si 0.939 3.061 9 H -0.258 1.258 10 H -0.291 1.291 11 H -0.266 1.266 12 N -0.700 5.700 13 C 0.509 3.491 14 O -0.600 6.600 15 C -0.133 4.133 16 H 0.144 0.856 17 C -0.112 4.112 18 C 0.075 3.925 19 H 0.094 0.906 20 N -0.854 5.854 21 C -0.112 4.112 22 H 0.040 0.960 23 H 0.044 0.956 24 H 0.067 0.933 25 H 0.271 0.729 26 H 0.407 0.593 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.351 0.649 30 H 0.350 0.650 31 H 0.062 0.938 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.510 -2.479 -17.685 17.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.133 3.867 3 H 0.035 0.965 4 C -0.571 4.571 5 H 0.075 0.925 6 C -0.171 4.171 7 N -0.572 5.572 8 Si 0.766 3.234 9 H -0.183 1.183 10 H -0.218 1.218 11 H -0.191 1.191 12 N -0.348 5.348 13 C 0.297 3.703 14 O -0.481 6.481 15 C -0.154 4.154 16 H 0.162 0.838 17 C -0.150 4.150 18 C -0.037 4.037 19 H 0.111 0.889 20 N -0.386 5.386 21 C -0.151 4.151 22 H 0.059 0.941 23 H 0.063 0.937 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.243 0.757 27 H 0.106 0.894 28 H 0.088 0.912 29 H 0.165 0.835 30 H 0.165 0.835 31 H 0.081 0.919 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.247 -1.312 -16.805 16.902 hybrid contribution -0.347 -0.217 0.034 0.411 sum 0.900 -1.529 -16.770 16.864 Atomic orbital electron populations 1.22326 0.97767 1.01739 0.99333 1.18758 0.91293 0.93032 0.83569 0.96511 1.21262 1.32333 1.13568 0.89920 0.92453 1.25550 0.96850 0.99295 0.95361 1.69970 1.46699 1.41887 0.98639 0.86008 0.79915 0.80370 0.77097 1.18330 1.21814 1.19135 1.46058 1.65163 1.14303 1.09281 1.21229 0.76629 0.86938 0.85499 1.90609 1.53181 1.18376 1.85973 1.22731 0.98985 1.01545 0.92141 0.83849 1.22884 0.97642 0.99045 0.95461 1.22720 0.91118 0.95233 0.94614 0.88856 1.58724 1.07231 1.31819 1.40823 1.22921 0.92242 1.02728 0.97196 0.94150 0.93702 0.91432 0.92016 0.75726 0.89435 0.91219 0.83531 0.83542 0.91897 0.88818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.85 8.97 71.98 0.65 -6.20 16 2 C 0.24 11.69 2.15 44.25 0.10 11.79 16 3 H 0.02 0.94 6.63 -2.39 -0.02 0.92 16 4 C -0.53 -29.60 9.31 25.60 0.24 -29.36 16 5 H 0.06 3.37 7.98 -2.91 -0.02 3.34 16 6 C 0.03 1.67 5.45 84.66 0.46 2.14 16 7 N -0.93 -56.48 13.96 21.45 0.30 -56.19 16 8 Si 0.94 45.64 24.37 68.60 1.67 47.31 16 9 H -0.26 -11.69 6.87 99.48 0.68 -11.01 16 10 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 11 H -0.27 -13.06 6.53 99.48 0.65 -12.41 16 12 N -0.70 -28.11 5.07 -446.09 -2.26 -30.38 16 13 C 0.51 19.42 7.32 87.66 0.64 20.06 16 14 O -0.60 -28.18 15.56 -3.04 -0.05 -28.23 16 15 C -0.13 -3.40 4.15 -11.01 -0.05 -3.44 16 16 H 0.14 2.69 8.14 -2.39 -0.02 2.67 16 17 C -0.11 -2.66 7.20 31.12 0.22 -2.44 16 18 C 0.07 1.37 4.96 45.44 0.23 1.60 16 19 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 20 N -0.85 -15.18 9.58 -166.49 -1.59 -16.78 16 21 C -0.11 -2.63 7.43 31.12 0.23 -2.40 16 22 H 0.04 1.84 3.27 -2.39 -0.01 1.83 16 23 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 25 H 0.27 15.35 8.31 -92.71 -0.77 14.57 16 26 H 0.41 14.17 8.54 -92.71 -0.79 13.37 16 27 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.07 2.16 7.43 -2.38 -0.02 2.14 16 29 H 0.35 4.77 9.08 -89.69 -0.81 3.96 16 30 H 0.35 5.13 9.07 -89.69 -0.81 4.31 16 31 H 0.06 1.90 8.09 -2.39 -0.02 1.88 16 32 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -70.31 263.23 -0.56 -70.88 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: -1.35 Total: 21.65 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: 2.72 Total: -8.27 kcal Atomic # 7 Polarization: -99.78 SS G_CDS: -3.56 Total: -103.34 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -0.05 Total: -28.23 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.67 Total: 47.31 kcal Total: -70.31 -0.56 -70.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693595319.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.747 kcal (2) G-P(sol) polarization free energy of solvation -70.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds