Wall clock time and date at job start Mon Mar 30 2020 03:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46506 * 119.99800 * 2 1 4 4 C 1.50699 * 109.47352 * 269.99857 * 3 2 1 5 5 H 1.08000 * 119.99828 * 0.02562 * 4 3 2 6 6 C 1.37870 * 120.00146 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99841 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 120.00215 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46988 * 90.00142 * 8 6 4 10 10 H 1.48502 * 109.47218 * 209.99962 * 8 6 4 11 11 H 1.48501 * 109.47118 * 330.00116 * 8 6 4 12 12 C 1.34773 * 120.00231 * 180.02562 * 2 1 3 13 13 O 1.21283 * 120.00360 * 179.72577 * 12 2 1 14 14 C 1.50706 * 120.00081 * 359.97438 * 12 2 1 15 15 H 1.08997 * 112.84529 * 48.52690 * 14 12 2 16 16 C 1.53779 * 113.61440 * 179.72830 * 14 12 2 17 17 C 1.53779 * 87.08050 * 139.98041 * 16 14 12 18 18 H 1.08999 * 113.61553 * 219.93378 * 17 16 14 19 19 N 1.46905 * 113.61565 * 89.11399 * 17 16 14 20 20 C 1.53783 * 113.61110 * 277.22741 * 14 12 2 21 21 H 1.09001 * 109.47443 * 269.99328 * 1 2 3 22 22 H 1.08999 * 109.47479 * 30.00306 * 1 2 3 23 23 H 1.09006 * 109.47080 * 149.99714 * 1 2 3 24 24 H 1.08995 * 109.47161 * 30.00561 * 3 2 1 25 25 H 1.09002 * 109.46900 * 149.99872 * 3 2 1 26 26 H 0.97007 * 120.00044 * 180.02562 * 7 6 4 27 27 H 1.09003 * 113.61163 * 254.52762 * 16 14 12 28 28 H 1.08997 * 113.61671 * 25.42926 * 16 14 12 29 29 H 1.00906 * 111.00124 * 180.02562 * 19 17 16 30 30 H 1.00906 * 110.99752 * 303.95129 * 19 17 16 31 31 H 1.08995 * 113.61351 * 334.55937 * 20 14 12 32 32 H 1.09002 * 113.61432 * 105.47136 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1259 2.8780 -1.6727 7 7 3.5531 3.6182 -0.6730 8 14 3.4366 3.4177 -3.4338 9 1 2.3062 4.2603 -3.9001 10 1 4.6967 4.2011 -3.4965 11 1 3.5540 2.2208 -4.3049 12 6 2.1388 -1.1671 -0.0005 13 8 3.3516 -1.1672 -0.0055 14 6 1.3854 -2.4723 -0.0005 15 1 0.5974 -2.5061 -0.7528 16 6 2.2977 -3.7103 -0.0078 17 6 1.3088 -4.3475 0.9826 18 1 1.7919 -4.9186 1.7754 19 7 0.2174 -5.0850 0.3321 20 6 0.9244 -2.9175 1.3975 21 1 -0.3634 -0.0001 1.0277 22 1 -0.3634 0.8899 -0.5139 23 1 -0.3633 -0.8900 -0.5139 24 1 1.6084 2.0284 0.5139 25 1 3.1498 1.1385 0.5139 26 1 4.0293 4.4445 -0.8502 27 1 2.3379 -4.2173 -0.9719 28 1 3.2847 -3.5278 0.4170 29 1 -0.4066 -5.4855 1.0165 30 1 -0.2851 -4.4931 -0.3123 31 1 1.5361 -2.5183 2.2065 32 1 -0.1439 -2.7845 1.5678 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693596906.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:07 Heat of formation + Delta-G solvation = -43.012280 kcal Electronic energy + Delta-G solvation = -14337.348591 eV Core-core repulsion = 11911.337418 eV Total energy + Delta-G solvation = -2426.011173 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.38288 -38.97730 -36.58717 -34.74133 -32.46684 -30.00699 -27.49878 -26.67513 -26.51955 -24.29983 -20.79950 -19.55522 -18.73144 -18.32793 -17.26945 -16.58246 -16.41414 -16.08602 -15.65049 -14.69810 -14.53444 -14.05543 -13.86096 -13.71987 -13.47396 -13.28887 -13.06500 -12.86971 -12.55124 -12.43338 -12.22507 -11.74795 -11.49888 -11.36914 -10.67158 -10.50460 -9.59974 -9.43410 -8.25423 -6.41066 1.34204 1.37706 1.48108 1.80606 2.31409 2.46534 3.03708 3.47090 3.53118 3.68511 3.79404 3.99140 4.12541 4.48439 4.60810 4.69812 4.81396 4.87243 4.93160 4.96990 5.02917 5.10489 5.19082 5.34012 5.53188 5.82271 6.02949 6.27101 6.66560 6.68359 6.78725 7.25337 7.48180 8.81745 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.054211 B = 0.007101 C = 0.006962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.379285 B = 3942.177706 C = 4020.727180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.609 5.609 3 C 0.257 3.743 4 C -0.545 4.545 5 H 0.052 0.948 6 C 0.006 3.994 7 N -0.929 5.929 8 Si 0.970 3.030 9 H -0.261 1.261 10 H -0.280 1.280 11 H -0.274 1.274 12 C 0.500 3.500 13 O -0.602 6.602 14 C -0.131 4.131 15 H 0.131 0.869 16 C -0.121 4.121 17 C 0.091 3.909 18 H 0.101 0.899 19 N -0.829 5.829 20 C -0.145 4.145 21 H 0.069 0.931 22 H 0.064 0.936 23 H 0.093 0.907 24 H 0.023 0.977 25 H -0.006 1.006 26 H 0.268 0.732 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.358 0.642 30 H 0.348 0.652 31 H 0.071 0.929 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.366 -13.394 2.625 17.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.340 5.340 3 C 0.136 3.864 4 C -0.584 4.584 5 H 0.070 0.930 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.794 3.206 9 H -0.185 1.185 10 H -0.205 1.205 11 H -0.199 1.199 12 C 0.290 3.710 13 O -0.484 6.484 14 C -0.152 4.152 15 H 0.149 0.851 16 C -0.160 4.160 17 C -0.022 4.022 18 H 0.119 0.881 19 N -0.360 5.360 20 C -0.185 4.185 21 H 0.087 0.913 22 H 0.083 0.917 23 H 0.112 0.888 24 H 0.041 0.959 25 H 0.013 0.987 26 H 0.077 0.923 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.173 0.827 30 H 0.162 0.838 31 H 0.090 0.910 32 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.122 -13.690 2.379 17.191 hybrid contribution 0.089 1.691 -0.293 1.719 sum -10.033 -11.999 2.086 15.779 Atomic orbital electron populations 1.21906 0.77928 1.03827 1.02435 1.48197 1.08403 1.06353 1.71023 1.18752 0.91015 0.80626 0.96046 1.21701 1.37060 1.06629 0.92983 0.92979 1.25902 0.94769 0.96365 1.02227 1.70057 1.38905 1.14774 1.33139 0.85375 0.78214 0.78195 0.78780 1.18544 1.20482 1.19863 1.21340 0.87691 0.86540 0.75449 1.90610 1.16885 1.88156 1.52782 1.22870 1.00173 0.90131 1.01988 0.85097 1.22956 0.97933 0.93860 1.01221 1.22266 0.93144 0.91272 0.95484 0.88059 1.58626 1.16238 1.38716 1.22402 1.23645 1.02676 0.98422 0.93766 0.91270 0.91715 0.88839 0.95910 0.98744 0.92318 0.90604 0.90975 0.82737 0.83796 0.91026 0.88213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.44 10.25 127.77 1.31 3.75 16 2 N -0.61 -26.66 2.86 -851.13 -2.43 -29.09 16 3 C 0.26 14.39 5.16 85.63 0.44 14.83 16 4 C -0.55 -32.40 9.39 25.60 0.24 -32.16 16 5 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 6 C 0.01 0.37 5.46 84.65 0.46 0.83 16 7 N -0.93 -57.33 13.29 21.44 0.28 -57.05 16 8 Si 0.97 45.70 29.54 68.60 2.03 47.73 16 9 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 11 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 12 C 0.50 21.60 7.20 87.66 0.63 22.23 16 13 O -0.60 -32.82 15.48 -3.04 -0.05 -32.87 16 14 C -0.13 -3.69 2.62 -11.01 -0.03 -3.72 16 15 H 0.13 2.97 6.50 -2.39 -0.02 2.96 16 16 C -0.12 -3.34 7.20 31.12 0.22 -3.11 16 17 C 0.09 1.76 5.18 45.44 0.24 1.99 16 18 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 19 N -0.83 -12.29 9.64 -166.48 -1.60 -13.90 16 20 C -0.14 -3.08 7.33 31.12 0.23 -2.85 16 21 H 0.07 1.72 8.14 -2.39 -0.02 1.71 16 22 H 0.06 2.06 8.07 -2.39 -0.02 2.04 16 23 H 0.09 2.09 6.21 -2.38 -0.01 2.08 16 24 H 0.02 1.29 8.07 -2.39 -0.02 1.27 16 25 H -0.01 -0.36 7.43 -2.39 -0.02 -0.38 16 26 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 27 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.07 2.39 7.43 -2.39 -0.02 2.37 16 29 H 0.36 3.64 9.08 -89.69 -0.81 2.83 16 30 H 0.35 4.56 8.15 -89.69 -0.73 3.83 16 31 H 0.07 1.80 8.09 -2.39 -0.02 1.78 16 32 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -76.37 269.63 1.55 -74.81 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -0.42 Total: 8.56 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: 3.74 Total: 1.80 kcal Atomic # 7 Polarization: -96.28 SS G_CDS: -3.75 Total: -100.03 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -0.05 Total: -32.87 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -76.37 1.55 -74.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693596906.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.802 kcal (2) G-P(sol) polarization free energy of solvation -76.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds