Wall clock time and date at job start Mon Mar 30 2020 02:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47509 * 2 1 4 4 C 1.50700 * 109.47277 * 240.00018 * 2 1 3 5 5 H 1.07995 * 120.00590 * 240.00137 * 4 2 1 6 6 C 1.37879 * 119.99780 * 60.00116 * 4 2 1 7 7 N 1.31520 * 120.00032 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00026 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47139 * 89.99891 * 8 6 4 10 10 H 1.48503 * 109.47110 * 209.99599 * 8 6 4 11 11 H 1.48498 * 109.47212 * 330.00243 * 8 6 4 12 12 N 1.46496 * 109.47259 * 120.00338 * 2 1 3 13 13 C 1.34782 * 119.99817 * 274.99797 * 12 2 1 14 14 O 1.21281 * 119.99833 * 0.02562 * 13 12 2 15 15 C 1.50702 * 119.99757 * 179.97438 * 13 12 2 16 16 H 1.08994 * 112.91064 * 48.75267 * 15 13 12 17 17 C 1.53787 * 113.61150 * 180.02562 * 15 13 12 18 18 C 1.53779 * 87.07963 * 139.98062 * 17 15 13 19 19 H 1.08999 * 113.61062 * 219.93155 * 18 17 15 20 20 N 1.46902 * 113.61279 * 89.11748 * 18 17 15 21 21 C 1.53779 * 87.08402 * 334.56577 * 18 17 15 22 22 H 1.08995 * 109.46799 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46981 * 299.99512 * 1 2 3 24 24 H 1.08995 * 109.46889 * 59.99825 * 1 2 3 25 25 H 0.96999 * 120.00232 * 180.02562 * 7 6 4 26 26 H 0.97001 * 120.00639 * 94.99821 * 12 2 1 27 27 H 1.08997 * 113.61028 * 254.53022 * 17 15 13 28 28 H 1.08998 * 113.61447 * 25.34557 * 17 15 13 29 29 H 1.00909 * 110.99541 * 179.97438 * 20 18 17 30 30 H 1.00898 * 110.99947 * 303.94985 * 20 18 17 31 31 H 1.09002 * 113.61557 * 270.88569 * 21 18 17 32 32 H 1.09004 * 113.61501 * 139.97990 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8298 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 1.3427 -2.1616 -4.4119 10 1 2.4865 -0.1412 -5.1123 11 1 3.6293 -1.7583 -3.7122 12 7 2.0184 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8583 1.1583 2.4117 15 6 2.6490 -0.7289 3.5877 16 1 3.5536 -1.3085 3.4037 17 6 2.7380 0.1757 4.8281 18 6 2.2035 -1.0166 5.6389 19 1 1.4820 -0.7347 6.4058 20 7 3.2589 -1.9032 6.1469 21 6 1.5570 -1.5127 4.3348 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 0.7081 1.1610 -3.4843 26 1 2.2491 -1.6318 1.1526 27 1 3.7575 0.4594 5.0892 28 1 2.0566 1.0259 4.7983 29 1 2.8654 -2.6699 6.6720 30 1 3.8407 -2.2407 5.3948 31 1 0.5515 -1.1249 4.1709 32 1 1.6230 -2.5920 4.1978 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693599711.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:31 Heat of formation + Delta-G solvation = -53.079974 kcal Electronic energy + Delta-G solvation = -14199.947794 eV Core-core repulsion = 11773.500053 eV Total energy + Delta-G solvation = -2426.447741 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.29417 -39.03366 -36.66081 -34.31784 -32.51355 -30.86462 -27.38729 -26.62229 -26.44055 -23.04078 -21.33985 -20.02088 -19.10067 -17.86916 -17.20959 -16.60563 -16.30487 -15.86169 -15.62904 -14.88492 -14.52169 -14.16246 -13.87485 -13.64476 -13.29893 -13.04975 -12.85525 -12.75148 -12.44939 -12.31293 -12.15760 -11.51782 -11.41442 -11.12710 -10.67364 -10.51388 -9.76115 -9.60360 -8.19354 -6.37583 1.43692 1.44787 1.55488 1.80510 2.35128 2.66887 3.10826 3.48374 3.53082 3.71487 3.85274 4.04398 4.32989 4.63530 4.73476 4.81590 4.88247 4.89955 4.99826 5.06408 5.10870 5.33381 5.41372 5.59892 5.66891 5.89362 6.07962 6.26055 6.66300 6.70721 6.98018 7.30694 7.57288 8.87087 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.058785 B = 0.006611 C = 0.006298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.197592 B = 4234.646521 C = 4444.535930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.268 3.732 3 H -0.006 1.006 4 C -0.548 4.548 5 H 0.074 0.926 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.975 3.025 9 H -0.270 1.270 10 H -0.286 1.286 11 H -0.264 1.264 12 N -0.704 5.704 13 C 0.503 3.497 14 O -0.605 6.605 15 C -0.134 4.134 16 H 0.132 0.868 17 C -0.117 4.117 18 C 0.089 3.911 19 H 0.101 0.899 20 N -0.829 5.829 21 C -0.149 4.149 22 H 0.041 0.959 23 H 0.010 0.990 24 H 0.066 0.934 25 H 0.266 0.734 26 H 0.404 0.596 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.357 0.643 30 H 0.348 0.652 31 H 0.072 0.928 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.927 -9.413 12.504 15.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.164 3.836 3 H 0.012 0.988 4 C -0.586 4.586 5 H 0.092 0.908 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.800 3.200 9 H -0.195 1.195 10 H -0.212 1.212 11 H -0.188 1.188 12 N -0.352 5.352 13 C 0.291 3.709 14 O -0.487 6.487 15 C -0.155 4.155 16 H 0.149 0.851 17 C -0.156 4.156 18 C -0.024 4.024 19 H 0.119 0.881 20 N -0.360 5.360 21 C -0.189 4.189 22 H 0.060 0.940 23 H 0.029 0.971 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.239 0.761 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.172 0.828 30 H 0.162 0.838 31 H 0.091 0.909 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.903 -7.849 12.809 15.300 hybrid contribution -0.328 -0.870 -1.844 2.065 sum 2.575 -8.718 10.965 14.244 Atomic orbital electron populations 1.21880 0.98357 0.99405 0.99431 1.18340 0.91137 0.91819 0.82311 0.98798 1.21549 1.32658 1.13560 0.90812 0.90837 1.25849 0.94852 0.95567 1.02464 1.70062 1.37016 1.23987 1.24655 0.85297 0.78982 0.78003 0.77756 1.19525 1.21213 1.18775 1.46303 1.65045 1.14123 1.09705 1.21314 0.77210 0.86899 0.85525 1.90610 1.53575 1.18638 1.85915 1.22888 1.01744 0.99950 0.90928 0.85066 1.22928 1.02610 0.97137 0.92914 1.22287 0.92776 0.93365 0.93960 0.88096 1.58630 1.22312 1.25133 1.29947 1.23661 0.97396 1.00645 0.97204 0.94032 0.97116 0.91560 0.92521 0.76096 0.90412 0.90707 0.82836 0.83801 0.90897 0.88687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.84 9.26 71.98 0.67 -6.18 16 2 C 0.27 14.22 2.56 44.25 0.11 14.34 16 3 H -0.01 -0.37 7.58 -2.39 -0.02 -0.39 16 4 C -0.55 -29.35 8.73 25.60 0.22 -29.12 16 5 H 0.07 3.66 7.74 -2.91 -0.02 3.63 16 6 C 0.01 0.68 5.30 84.65 0.45 1.13 16 7 N -0.92 -53.40 11.32 21.45 0.24 -53.16 16 8 Si 0.98 42.11 29.54 68.60 2.03 44.14 16 9 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 10 H -0.29 -12.35 7.11 99.48 0.71 -11.65 16 11 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 12 N -0.70 -29.69 5.07 -446.09 -2.26 -31.95 16 13 C 0.50 20.43 7.32 87.66 0.64 21.07 16 14 O -0.61 -30.70 15.56 -3.03 -0.05 -30.74 16 15 C -0.13 -3.63 3.81 -11.01 -0.04 -3.67 16 16 H 0.13 2.85 7.71 -2.39 -0.02 2.84 16 17 C -0.12 -3.07 7.20 31.12 0.22 -2.85 16 18 C 0.09 1.70 5.18 45.44 0.24 1.93 16 19 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 20 N -0.83 -12.48 9.64 -166.50 -1.60 -14.08 16 21 C -0.15 -3.19 7.35 31.12 0.23 -2.96 16 22 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 23 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 24 H 0.07 3.75 6.07 -2.39 -0.01 3.74 16 25 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 26 H 0.40 14.21 8.54 -92.71 -0.79 13.41 16 27 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.07 2.34 7.43 -2.39 -0.02 2.33 16 29 H 0.36 3.83 9.08 -89.69 -0.81 3.01 16 30 H 0.35 4.68 8.15 -89.70 -0.73 3.95 16 31 H 0.07 1.84 8.09 -2.39 -0.02 1.82 16 32 H 0.09 1.57 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -68.45 268.55 -0.10 -68.54 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: -1.19 Total: 23.56 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: 2.74 Total: -6.31 kcal Atomic # 7 Polarization: -95.56 SS G_CDS: -3.62 Total: -99.19 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -0.05 Total: -30.74 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -68.45 -0.10 -68.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693599711.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.463 kcal (2) G-P(sol) polarization free energy of solvation -68.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds