Wall clock time and date at job start Mon Mar 30 2020 02:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47057 * 2 1 4 4 C 1.53005 * 109.46633 * 240.00859 * 2 1 3 5 5 C 1.50706 * 109.46722 * 174.99843 * 4 2 1 6 6 H 1.07990 * 120.00230 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99416 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00854 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99768 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46891 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47143 * 119.99641 * 9 7 5 12 12 H 1.48497 * 109.47265 * 239.99920 * 9 7 5 13 13 N 1.46892 * 109.47625 * 120.00695 * 2 1 3 14 14 C 1.47479 * 110.99952 * 33.19701 * 13 2 1 15 15 C 1.53510 * 87.93497 * 221.29962 * 14 13 2 16 16 C 1.50695 * 114.17616 * 139.67148 * 15 14 13 17 17 N 1.34778 * 120.00400 * 86.15563 * 16 15 14 18 18 O 1.21283 * 120.00215 * 266.16289 * 16 15 14 19 19 C 1.47483 * 111.00088 * 297.22967 * 13 2 1 20 20 H 1.08998 * 109.47336 * 170.11972 * 1 2 3 21 21 H 1.09004 * 109.46851 * 290.11658 * 1 2 3 22 22 H 1.08994 * 109.47496 * 50.11204 * 1 2 3 23 23 H 1.09002 * 109.47109 * 294.99591 * 4 2 1 24 24 H 1.08999 * 109.47549 * 54.99912 * 4 2 1 25 25 H 0.96998 * 120.00341 * 179.97438 * 8 7 5 26 26 H 1.09006 * 113.48036 * 336.06201 * 14 13 2 27 27 H 1.09000 * 113.48014 * 106.53495 * 14 13 2 28 28 H 1.09002 * 114.17111 * 272.37777 * 15 14 13 29 29 H 0.97001 * 119.99519 * 0.02562 * 17 16 15 30 30 H 0.96993 * 120.00322 * 180.02562 * 17 16 15 31 31 H 1.09000 * 113.47352 * 253.47329 * 19 13 2 32 32 H 1.09003 * 113.47367 * 23.86943 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5419 -0.6147 -1.3129 6 1 4.0789 -0.0854 -0.5398 7 6 4.2303 -1.1932 -2.3581 8 7 3.5764 -1.8382 -3.2994 9 14 6.0919 -1.0608 -2.4373 10 1 6.5836 -0.2906 -1.2667 11 1 6.6862 -2.4216 -2.4189 12 1 6.4859 -0.3655 -3.6889 13 7 2.0198 -0.6926 1.1992 14 6 1.1098 -1.7867 1.5864 15 6 1.3059 -1.3582 3.0474 16 6 0.0486 -1.4008 3.8770 17 7 -0.3235 -2.5481 4.4784 18 8 -0.6286 -0.4026 4.0036 19 6 1.6021 0.0134 2.4249 20 1 -0.3634 -1.0124 -0.1763 21 1 -0.3633 0.3535 0.9650 22 1 -0.3634 0.6590 -0.7885 23 1 1.7516 -1.7714 -1.2059 24 1 1.6053 -0.2615 -2.1371 25 1 4.0607 -2.2449 -4.0349 26 1 0.0896 -1.6507 1.2272 27 1 1.5056 -2.7785 1.3679 28 1 2.1630 -1.8207 3.5369 29 1 0.2182 -3.3464 4.3775 30 1 -1.1330 -2.5756 5.0122 31 1 2.4151 0.5472 2.9170 32 1 0.7140 0.6306 2.2892 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695797649.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:41 Heat of formation + Delta-G solvation = -30.547888 kcal Electronic energy + Delta-G solvation = -14379.176465 eV Core-core repulsion = 11953.705789 eV Total energy + Delta-G solvation = -2425.470676 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.99969 -39.57628 -35.71646 -34.60711 -33.75768 -29.43218 -28.77554 -26.88612 -25.32406 -23.47242 -20.89973 -19.97361 -18.57966 -18.37640 -17.85656 -16.84102 -16.52082 -16.13566 -15.57456 -15.16029 -14.56929 -14.36172 -14.21695 -13.70803 -13.36791 -12.83645 -12.63980 -12.59845 -12.37664 -12.11263 -11.84299 -11.55439 -11.14883 -11.07573 -10.91873 -10.62981 -10.49786 -9.51988 -8.11004 -6.16721 1.42428 1.43016 1.56495 1.56748 2.47648 2.56513 3.17811 3.26560 3.39889 3.93957 4.07384 4.21672 4.26865 4.33811 4.43994 4.55929 4.69799 4.81224 4.92293 5.00674 5.11359 5.26404 5.40166 5.57624 5.74937 5.90137 5.92912 6.23104 6.43298 6.48346 6.96929 7.36093 7.49578 9.01435 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.049498 B = 0.007186 C = 0.006877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.538800 B = 3895.302544 C = 4070.537919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.058 3.942 3 H 0.063 0.937 4 C 0.043 3.957 5 C -0.504 4.504 6 H 0.057 0.943 7 C -0.005 4.005 8 N -0.940 5.940 9 Si 0.960 3.040 10 H -0.265 1.265 11 H -0.280 1.280 12 H -0.282 1.282 13 N -0.466 5.466 14 C 0.006 3.994 15 C -0.128 4.128 16 C 0.532 3.468 17 N -0.831 5.831 18 O -0.588 6.588 19 C 0.008 3.992 20 H 0.059 0.941 21 H 0.065 0.935 22 H 0.061 0.939 23 H -0.006 1.006 24 H -0.008 1.008 25 H 0.260 0.740 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.146 0.854 29 H 0.419 0.581 30 H 0.408 0.592 31 H 0.089 0.911 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.748 -2.645 14.430 15.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.051 4.051 3 H 0.081 0.919 4 C 0.005 3.995 5 C -0.542 4.542 6 H 0.075 0.925 7 C -0.201 4.201 8 N -0.582 5.582 9 Si 0.786 3.214 10 H -0.190 1.190 11 H -0.206 1.206 12 H -0.208 1.208 13 N -0.187 5.187 14 C -0.123 4.123 15 C -0.150 4.150 16 C 0.316 3.684 17 N -0.394 5.394 18 O -0.468 6.468 19 C -0.121 4.121 20 H 0.078 0.922 21 H 0.083 0.917 22 H 0.081 0.919 23 H 0.012 0.988 24 H 0.011 0.989 25 H 0.068 0.932 26 H 0.100 0.900 27 H 0.107 0.893 28 H 0.163 0.837 29 H 0.250 0.750 30 H 0.240 0.760 31 H 0.108 0.892 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.296 -2.139 14.078 15.193 hybrid contribution -0.060 -0.211 -0.366 0.427 sum -5.356 -2.349 13.712 14.907 Atomic orbital electron populations 1.22436 0.96714 1.01996 1.02072 1.22055 0.92581 0.97853 0.92612 0.91917 1.18913 0.95314 0.94078 0.91160 1.21519 0.93214 1.32611 1.06897 0.92495 1.25882 1.03177 0.95478 0.95597 1.70098 1.37171 1.37906 1.13066 0.85468 0.80248 0.77788 0.77924 1.18960 1.20621 1.20792 1.69247 1.42393 1.06455 1.00648 1.23929 0.98047 0.98483 0.91840 1.22867 0.97301 0.99783 0.95003 1.20457 0.86180 0.83136 0.78591 1.43669 1.30350 1.12492 1.52926 1.90712 1.56320 1.36250 1.63564 1.23762 1.00701 0.95750 0.91914 0.92208 0.91655 0.91950 0.98761 0.98945 0.93160 0.89969 0.89308 0.83652 0.74976 0.76016 0.89227 0.90788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.11 7.72 71.98 0.56 -5.56 16 2 C 0.06 2.44 2.36 44.92 0.11 2.54 16 3 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 4 C 0.04 2.26 4.57 29.85 0.14 2.40 16 5 C -0.50 -29.03 8.84 25.60 0.23 -28.81 16 6 H 0.06 3.25 7.74 -2.92 -0.02 3.23 16 7 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 8 N -0.94 -57.92 13.29 21.45 0.28 -57.64 16 9 Si 0.96 45.50 29.54 68.60 2.03 47.53 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 13 N -0.47 -17.60 6.06 -902.50 -5.47 -23.07 16 14 C 0.01 0.19 6.83 83.57 0.57 0.76 16 15 C -0.13 -3.17 4.48 -11.20 -0.05 -3.22 16 16 C 0.53 12.66 7.66 87.66 0.67 13.34 16 17 N -0.83 -11.69 8.87 -173.53 -1.54 -13.23 16 18 O -0.59 -19.07 16.78 -3.04 -0.05 -19.12 16 19 C 0.01 0.24 6.88 83.57 0.58 0.82 16 20 H 0.06 2.06 6.51 -2.39 -0.02 2.05 16 21 H 0.06 2.12 5.84 -2.39 -0.01 2.10 16 22 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 23 H -0.01 -0.34 8.06 -2.39 -0.02 -0.36 16 24 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 25 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 26 H 0.08 2.53 4.78 -2.38 -0.01 2.52 16 27 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 28 H 0.15 2.89 8.14 -2.39 -0.02 2.87 16 29 H 0.42 3.43 8.83 -92.71 -0.82 2.61 16 30 H 0.41 4.70 8.93 -92.71 -0.83 3.88 16 31 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 32 H 0.07 2.42 5.29 -2.39 -0.01 2.41 16 Total: -1.00 -71.92 263.81 -2.00 -73.92 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -0.51 Total: 9.18 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: 3.25 Total: -17.58 kcal Atomic # 7 Polarization: -87.21 SS G_CDS: -6.72 Total: -93.94 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.05 Total: -19.12 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -71.92 -2.00 -73.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695797649.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.374 kcal (2) G-P(sol) polarization free energy of solvation -71.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds