Wall clock time and date at job start Mon Mar 30 2020 02:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47159 * 2 1 4 4 C 1.52997 * 109.47153 * 120.00132 * 2 1 3 5 5 C 1.50706 * 109.47238 * 184.99569 * 4 2 1 6 6 H 1.07999 * 119.99515 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00176 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99883 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00043 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47293 * 89.99746 * 9 7 5 11 11 H 1.48504 * 109.47104 * 209.99992 * 9 7 5 12 12 H 1.48495 * 109.47249 * 329.99739 * 9 7 5 13 13 N 1.46903 * 109.46949 * 240.00042 * 2 1 3 14 14 C 1.47479 * 111.00009 * 155.96866 * 13 2 1 15 15 C 1.53507 * 87.93539 * 221.29824 * 14 13 2 16 16 C 1.50705 * 114.17305 * 272.38150 * 15 14 13 17 17 N 1.34775 * 119.99439 * 273.84153 * 16 15 14 18 18 O 1.21280 * 119.99897 * 93.83489 * 16 15 14 19 19 C 1.47480 * 110.99627 * 60.00363 * 13 2 1 20 20 H 1.09000 * 109.47090 * 59.99702 * 1 2 3 21 21 H 1.08993 * 109.47376 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.46634 * 299.99965 * 1 2 3 23 23 H 1.09001 * 109.46832 * 64.99883 * 4 2 1 24 24 H 1.09000 * 109.47611 * 305.00180 * 4 2 1 25 25 H 0.97004 * 119.99507 * 180.02562 * 8 7 5 26 26 H 1.09001 * 113.47832 * 336.06856 * 14 13 2 27 27 H 1.09002 * 113.47377 * 106.52829 * 14 13 2 28 28 H 1.09000 * 114.17227 * 139.67387 * 15 14 13 29 29 H 0.96995 * 120.00536 * 359.97438 * 17 16 15 30 30 H 0.97003 * 119.99409 * 180.02562 * 17 16 15 31 31 H 1.09003 * 113.47041 * 253.46704 * 19 13 2 32 32 H 1.09000 * 113.48095 * 23.87164 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5420 -0.6150 1.3126 6 1 4.0789 -0.0856 0.5395 7 6 4.2305 -1.1936 2.3576 8 7 3.5765 -1.8388 3.2988 9 14 6.0921 -1.0613 2.4366 10 1 6.4700 0.1608 3.1908 11 1 6.6447 -2.2570 3.1224 12 1 6.6417 -0.9827 1.0593 13 7 2.0196 -0.6925 -1.1995 14 6 3.3814 -0.2465 -1.5484 15 6 2.9446 -0.2469 -3.0200 16 6 3.1153 -1.5736 -3.7141 17 7 4.2973 -1.8917 -4.2782 18 8 2.1892 -2.3551 -3.7649 19 6 1.5468 -0.0236 -2.4259 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8901 23 1 1.7516 -1.7715 1.2055 24 1 1.6054 -0.2619 2.1370 25 1 4.0610 -2.2456 4.0342 26 1 3.6243 0.7456 -1.1678 27 1 4.1510 -0.9849 -1.3237 28 1 3.3235 0.5958 -3.5983 29 1 5.0378 -1.2666 -4.2379 30 1 4.4071 -2.7455 -4.7253 31 1 0.7615 -0.5733 -2.9449 32 1 1.2990 1.0277 -2.2792 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695797660.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:44 Heat of formation + Delta-G solvation = -9.971216 kcal Electronic energy + Delta-G solvation = -14559.405920 eV Core-core repulsion = 12134.827515 eV Total energy + Delta-G solvation = -2424.578405 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.44613 -37.99416 -33.88457 -33.37694 -31.98690 -27.75677 -27.25068 -24.98094 -23.28817 -21.96530 -19.61492 -19.01373 -17.02008 -16.56312 -16.22493 -15.42522 -14.68160 -14.51615 -14.03551 -13.47718 -13.27846 -12.34374 -12.17919 -12.10010 -11.62534 -11.35343 -11.16568 -10.80738 -10.60446 -10.45574 -10.16767 -10.09457 -9.62685 -9.48490 -9.07988 -8.89237 -8.31640 -8.02798 -5.94517 -3.95174 2.90663 3.31426 3.37850 3.39186 3.69270 4.47696 4.61127 4.74381 5.08090 5.37853 5.42298 5.66724 5.73776 5.88979 5.90752 6.08121 6.22049 6.25111 6.46862 6.47629 6.71602 6.93462 6.95645 7.23637 7.48493 7.60990 7.72053 8.04389 8.11469 8.46771 8.53520 9.08830 9.66588 11.17303 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.026962 B = 0.010615 C = 0.008365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.257489 B = 2637.181483 C = 3346.395303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.049 3.951 3 H 0.035 0.965 4 C 0.032 3.968 5 C -0.515 4.515 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.887 3.113 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.441 5.441 14 C 0.042 3.958 15 C -0.164 4.164 16 C 0.547 3.453 17 N -0.860 5.860 18 O -0.530 6.530 19 C 0.015 3.985 20 H 0.039 0.961 21 H 0.058 0.942 22 H 0.054 0.946 23 H 0.026 0.974 24 H 0.018 0.982 25 H 0.259 0.741 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.399 0.601 30 H 0.398 0.602 31 H 0.088 0.912 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.205 5.143 -12.782 13.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.059 4.059 3 H 0.053 0.947 4 C -0.005 4.005 5 C -0.553 4.553 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.715 3.285 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.164 5.164 14 C -0.088 4.088 15 C -0.186 4.186 16 C 0.331 3.669 17 N -0.423 5.423 18 O -0.404 6.404 19 C -0.115 4.115 20 H 0.058 0.942 21 H 0.077 0.923 22 H 0.073 0.927 23 H 0.044 0.956 24 H 0.036 0.964 25 H 0.069 0.931 26 H 0.095 0.905 27 H 0.108 0.892 28 H 0.117 0.883 29 H 0.227 0.773 30 H 0.228 0.772 31 H 0.107 0.893 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.330 3.955 -12.367 12.988 hybrid contribution 1.738 0.908 0.020 1.961 sum 2.067 4.863 -12.347 13.431 Atomic orbital electron populations 1.21851 0.96211 1.01880 1.00117 1.22404 0.93691 0.95862 0.93960 0.94671 1.19092 0.95642 0.96151 0.89607 1.21346 0.92248 1.33897 1.07820 0.92272 1.24996 0.97952 0.95564 0.95931 1.69970 1.35278 1.36080 1.12117 0.86682 0.86357 0.77436 0.78004 1.20876 1.21333 1.19996 1.69117 1.02741 1.44330 1.00231 1.23637 0.95658 1.01160 0.88342 1.22798 1.01646 0.95674 0.98474 1.19832 0.82156 0.87938 0.76956 1.43802 1.14550 1.23165 1.60804 1.90718 1.40511 1.51152 1.58066 1.23619 0.95589 0.98367 0.93908 0.94150 0.92293 0.92726 0.95570 0.96368 0.93149 0.90542 0.89224 0.88346 0.77306 0.77179 0.89344 0.91570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.09 37.16 0.34 -2.28 16 2 C 0.05 1.04 1.97 -67.71 -0.13 0.91 16 3 H 0.04 0.73 7.52 -51.93 -0.39 0.34 16 4 C 0.03 0.85 4.65 -27.88 -0.13 0.72 16 5 C -0.51 -14.18 8.28 -34.44 -0.29 -14.47 16 6 H 0.06 1.52 4.88 -52.49 -0.26 1.27 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.89 -27.18 13.29 55.43 0.74 -26.44 16 9 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 N -0.44 -8.95 6.01 -236.62 -1.42 -10.37 16 14 C 0.04 0.74 4.87 -7.56 -0.04 0.71 16 15 C -0.16 -2.37 4.56 -91.24 -0.42 -2.79 16 16 C 0.55 8.58 7.55 -10.98 -0.08 8.50 16 17 N -0.86 -9.49 8.87 31.22 0.28 -9.21 16 18 O -0.53 -10.66 16.81 5.56 0.09 -10.57 16 19 C 0.01 0.24 5.78 -7.56 -0.04 0.20 16 20 H 0.04 0.64 7.03 -51.93 -0.37 0.27 16 21 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 22 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 23 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.08 1.32 6.93 -51.93 -0.36 0.96 16 27 H 0.09 1.77 7.73 -51.93 -0.40 1.37 16 28 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.40 3.19 8.83 -40.82 -0.36 2.83 16 30 H 0.40 3.91 8.93 -40.82 -0.36 3.55 16 31 H 0.09 1.51 7.51 -51.93 -0.39 1.12 16 32 H 0.07 0.95 7.66 -51.93 -0.40 0.55 16 LS Contribution 264.08 15.07 3.98 3.98 Total: -1.00 -33.66 264.08 -6.78 -40.44 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -4.53 Total: 2.75 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -0.89 Total: -7.00 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: -0.41 Total: -46.02 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -33.66 -6.78 -40.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695797660.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.470 kcal (2) G-P(sol) polarization free energy of solvation -33.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds