Wall clock time and date at job start Mon Mar 30 2020 02:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47159 * 2 1 4 4 C 1.52997 * 109.47153 * 120.00132 * 2 1 3 5 5 C 1.50706 * 109.47238 * 184.99569 * 4 2 1 6 6 H 1.07999 * 119.99515 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00176 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99883 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00043 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47293 * 89.99746 * 9 7 5 11 11 H 1.48504 * 109.47104 * 209.99992 * 9 7 5 12 12 H 1.48495 * 109.47249 * 329.99739 * 9 7 5 13 13 N 1.46903 * 109.46949 * 240.00042 * 2 1 3 14 14 C 1.47479 * 111.00009 * 155.96866 * 13 2 1 15 15 C 1.53507 * 87.93539 * 221.29824 * 14 13 2 16 16 C 1.50705 * 114.17305 * 272.38150 * 15 14 13 17 17 N 1.34775 * 119.99439 * 273.84153 * 16 15 14 18 18 O 1.21280 * 119.99897 * 93.83489 * 16 15 14 19 19 C 1.47480 * 110.99627 * 60.00363 * 13 2 1 20 20 H 1.09000 * 109.47090 * 59.99702 * 1 2 3 21 21 H 1.08993 * 109.47376 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.46634 * 299.99965 * 1 2 3 23 23 H 1.09001 * 109.46832 * 64.99883 * 4 2 1 24 24 H 1.09000 * 109.47611 * 305.00180 * 4 2 1 25 25 H 0.97004 * 119.99507 * 180.02562 * 8 7 5 26 26 H 1.09001 * 113.47832 * 336.06856 * 14 13 2 27 27 H 1.09002 * 113.47377 * 106.52829 * 14 13 2 28 28 H 1.09000 * 114.17227 * 139.67387 * 15 14 13 29 29 H 0.96995 * 120.00536 * 359.97438 * 17 16 15 30 30 H 0.97003 * 119.99409 * 180.02562 * 17 16 15 31 31 H 1.09003 * 113.47041 * 253.46704 * 19 13 2 32 32 H 1.09000 * 113.48095 * 23.87164 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5420 -0.6150 1.3126 6 1 4.0789 -0.0856 0.5395 7 6 4.2305 -1.1936 2.3576 8 7 3.5765 -1.8388 3.2988 9 14 6.0921 -1.0613 2.4366 10 1 6.4700 0.1608 3.1908 11 1 6.6447 -2.2570 3.1224 12 1 6.6417 -0.9827 1.0593 13 7 2.0196 -0.6925 -1.1995 14 6 3.3814 -0.2465 -1.5484 15 6 2.9446 -0.2469 -3.0200 16 6 3.1153 -1.5736 -3.7141 17 7 4.2973 -1.8917 -4.2782 18 8 2.1892 -2.3551 -3.7649 19 6 1.5468 -0.0236 -2.4259 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8901 23 1 1.7516 -1.7715 1.2055 24 1 1.6054 -0.2619 2.1370 25 1 4.0610 -2.2456 4.0342 26 1 3.6243 0.7456 -1.1678 27 1 4.1510 -0.9849 -1.3237 28 1 3.3235 0.5958 -3.5983 29 1 5.0378 -1.2666 -4.2379 30 1 4.4071 -2.7455 -4.7253 31 1 0.7615 -0.5733 -2.9449 32 1 1.2990 1.0277 -2.2792 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695797660.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:44 Heat of formation + Delta-G solvation = -38.650171 kcal Electronic energy + Delta-G solvation = -14560.649533 eV Core-core repulsion = 12134.827515 eV Total energy + Delta-G solvation = -2425.822017 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.77987 -39.33973 -35.71241 -34.54790 -33.87425 -29.68126 -28.61848 -26.42221 -25.16369 -23.40497 -21.24382 -20.24548 -18.52460 -17.87099 -17.77681 -16.95303 -16.54068 -15.94778 -15.43746 -14.95292 -14.86555 -13.97446 -13.72686 -13.63053 -13.25072 -13.14440 -12.89294 -12.60280 -12.31253 -12.21378 -11.82367 -11.56937 -11.03380 -10.92564 -10.76442 -10.55485 -10.50746 -9.49823 -8.12528 -6.20768 1.40454 1.42633 1.52183 1.69231 2.44301 2.64390 3.18490 3.32066 3.47119 3.91354 4.25369 4.26802 4.31795 4.52734 4.58579 4.69209 4.76908 4.91005 4.96818 5.06934 5.20146 5.29620 5.52957 5.58704 5.70352 5.90897 5.99752 6.29319 6.42419 6.59016 6.93572 7.46297 7.47215 9.00465 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.026962 B = 0.010615 C = 0.008365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.257489 B = 2637.181483 C = 3346.395303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.058 3.942 3 H 0.047 0.953 4 C 0.037 3.963 5 C -0.521 4.521 6 H 0.080 0.920 7 C -0.009 4.009 8 N -0.942 5.942 9 Si 0.960 3.040 10 H -0.273 1.273 11 H -0.292 1.292 12 H -0.254 1.254 13 N -0.483 5.483 14 C 0.037 3.963 15 C -0.139 4.139 16 C 0.537 3.463 17 N -0.836 5.836 18 O -0.584 6.584 19 C 0.018 3.982 20 H 0.071 0.929 21 H 0.039 0.961 22 H 0.059 0.941 23 H -0.020 1.020 24 H -0.009 1.009 25 H 0.258 0.742 26 H 0.088 0.912 27 H 0.064 0.936 28 H 0.150 0.850 29 H 0.417 0.583 30 H 0.406 0.594 31 H 0.076 0.924 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.833 7.035 -14.795 16.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.050 4.050 3 H 0.065 0.935 4 C -0.001 4.001 5 C -0.559 4.559 6 H 0.098 0.902 7 C -0.205 4.205 8 N -0.583 5.583 9 Si 0.785 3.215 10 H -0.198 1.198 11 H -0.219 1.219 12 H -0.178 1.178 13 N -0.206 5.206 14 C -0.093 4.093 15 C -0.161 4.161 16 C 0.322 3.678 17 N -0.400 5.400 18 O -0.463 6.463 19 C -0.111 4.111 20 H 0.090 0.910 21 H 0.059 0.941 22 H 0.078 0.922 23 H -0.001 1.001 24 H 0.009 0.991 25 H 0.067 0.933 26 H 0.106 0.894 27 H 0.083 0.917 28 H 0.167 0.833 29 H 0.249 0.751 30 H 0.237 0.763 31 H 0.095 0.905 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.008 5.876 -14.420 15.700 hybrid contribution 1.219 0.289 0.622 1.399 sum 3.227 6.165 -13.798 15.453 Atomic orbital electron populations 1.21790 0.94446 1.01266 1.01931 1.22170 0.95184 0.95403 0.92286 0.93515 1.18960 0.95704 0.93819 0.91577 1.21825 0.92971 1.33194 1.07917 0.90249 1.26013 1.03552 0.95294 0.95636 1.70146 1.37501 1.37594 1.13058 0.85517 0.79707 0.77305 0.78978 1.19847 1.21873 1.17758 1.69048 1.04625 1.45858 1.01079 1.23608 0.93925 1.00773 0.90946 1.22699 0.99839 0.96693 0.96852 1.20180 0.82586 0.88040 0.76953 1.43615 1.13708 1.23777 1.58944 1.90705 1.42536 1.52656 1.60404 1.23661 0.96408 0.99328 0.91694 0.90969 0.94150 0.92199 1.00117 0.99081 0.93319 0.89379 0.91704 0.83266 0.75142 0.76290 0.90548 0.88709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.93 9.09 71.98 0.65 -4.27 16 2 C 0.06 2.43 1.97 44.91 0.09 2.52 16 3 H 0.05 1.83 7.52 -2.39 -0.02 1.82 16 4 C 0.04 2.00 4.65 29.85 0.14 2.14 16 5 C -0.52 -28.89 8.28 25.60 0.21 -28.68 16 6 H 0.08 3.98 4.88 -2.91 -0.01 3.97 16 7 C -0.01 -0.50 5.46 84.65 0.46 -0.04 16 8 N -0.94 -58.99 13.29 21.45 0.28 -58.71 16 9 Si 0.96 43.87 29.54 68.60 2.03 45.90 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 12 H -0.25 -10.63 7.11 99.48 0.71 -9.92 16 13 N -0.48 -19.12 6.01 -902.54 -5.42 -24.55 16 14 C 0.04 1.23 4.87 83.57 0.41 1.64 16 15 C -0.14 -3.55 4.56 -11.20 -0.05 -3.60 16 16 C 0.54 15.72 7.55 87.66 0.66 16.38 16 17 N -0.84 -16.08 8.87 -173.53 -1.54 -17.62 16 18 O -0.58 -23.19 16.81 -3.03 -0.05 -23.24 16 19 C 0.02 0.54 5.78 83.57 0.48 1.02 16 20 H 0.07 2.12 7.03 -2.39 -0.02 2.10 16 21 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 22 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 23 H -0.02 -1.23 8.14 -2.39 -0.02 -1.25 16 24 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 25 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 26 H 0.09 2.73 6.93 -2.39 -0.02 2.71 16 27 H 0.06 2.46 7.73 -2.39 -0.02 2.44 16 28 H 0.15 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.42 5.05 8.83 -92.71 -0.82 4.24 16 30 H 0.41 7.01 8.93 -92.71 -0.83 6.18 16 31 H 0.08 2.49 7.51 -2.39 -0.02 2.47 16 32 H 0.09 2.29 7.66 -2.39 -0.02 2.28 16 Total: -1.00 -76.12 264.08 -2.16 -78.28 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -0.51 Total: 12.83 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: 3.06 Total: -12.89 kcal Atomic # 7 Polarization: -94.19 SS G_CDS: -6.68 Total: -100.87 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.05 Total: -23.24 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -76.12 -2.16 -78.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695797660.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.628 kcal (2) G-P(sol) polarization free energy of solvation -76.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds