Wall clock time and date at job start Mon Mar 30 2020 02:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47410 * 2 1 4 4 C 1.53002 * 109.47240 * 239.99674 * 2 1 3 5 5 C 1.50691 * 109.47482 * 175.00033 * 4 2 1 6 6 H 1.08008 * 119.99796 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00440 * 180.02562 * 5 4 2 8 8 N 1.31509 * 119.99849 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00229 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47338 * 90.00048 * 9 7 5 11 11 H 1.48503 * 109.47392 * 209.99684 * 9 7 5 12 12 H 1.48505 * 109.47267 * 329.99975 * 9 7 5 13 13 N 1.46901 * 109.47105 * 120.00222 * 2 1 3 14 14 C 1.46904 * 110.99636 * 275.00038 * 13 2 1 15 15 H 1.09000 * 110.88721 * 31.18660 * 14 13 2 16 16 C 1.54480 * 110.96933 * 155.00028 * 14 13 2 17 17 N 1.46760 * 105.54782 * 143.57599 * 16 14 13 18 18 C 1.34415 * 111.30303 * 342.93897 * 17 16 14 19 19 O 1.21288 * 124.94382 * 180.42984 * 18 17 16 20 20 C 1.51282 * 110.11730 * 0.40627 * 18 17 16 21 21 H 1.08997 * 109.47165 * 300.00366 * 1 2 3 22 22 H 1.09003 * 109.47113 * 59.99872 * 1 2 3 23 23 H 1.08996 * 109.47410 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47209 * 295.00451 * 4 2 1 25 25 H 1.09008 * 109.46868 * 55.00112 * 4 2 1 26 26 H 0.97007 * 119.99995 * 180.02562 * 8 7 5 27 27 H 1.00891 * 111.00483 * 151.04740 * 13 2 1 28 28 H 1.09002 * 110.24746 * 24.53030 * 16 14 13 29 29 H 1.09002 * 110.24236 * 262.61753 * 16 14 13 30 30 H 0.97010 * 124.34794 * 162.95909 * 17 16 14 31 31 H 1.08998 * 110.48346 * 134.92775 * 20 18 17 32 32 H 1.08993 * 110.48478 * 257.44459 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5418 -0.6150 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2303 -1.1928 -2.3583 8 7 3.5763 -1.8371 -3.2999 9 14 6.0920 -1.0616 -2.4366 10 1 6.6999 -2.2149 -1.7254 11 1 6.5296 -1.0688 -3.8557 12 1 6.5268 0.2031 -1.7909 13 7 2.0196 -0.6925 1.1994 14 6 2.0824 0.2226 2.3469 15 1 1.3069 0.9855 2.2784 16 6 1.9788 -0.5530 3.6789 17 7 2.8691 0.1472 4.6120 18 6 3.7294 0.9472 3.9589 19 8 4.5782 1.6334 4.4878 20 6 3.4854 0.8668 2.4681 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.7516 -1.7715 -1.2056 25 1 1.6053 -0.2618 -2.1370 26 1 4.0607 -2.2439 -4.0353 27 1 2.9172 -1.1205 1.0288 28 1 2.3095 -1.5826 3.5426 29 1 0.9535 -0.5325 4.0484 30 1 2.8406 0.0455 5.5764 31 1 3.4866 1.8635 2.0271 32 1 4.2382 0.2389 1.9917 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695818781.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:17 Heat of formation + Delta-G solvation = -72.907323 kcal Electronic energy + Delta-G solvation = -14285.244769 eV Core-core repulsion = 11857.937250 eV Total energy + Delta-G solvation = -2427.307519 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.29682 -38.52656 -36.80033 -34.68321 -32.61526 -29.65807 -29.15245 -27.77853 -25.02483 -22.08686 -21.58827 -21.10705 -18.47109 -18.43235 -17.43417 -16.67470 -16.14033 -15.93839 -15.30971 -14.96982 -14.59126 -14.28690 -13.94585 -13.47986 -13.45484 -13.13760 -12.96329 -12.58811 -12.43152 -12.27556 -12.15194 -12.05037 -11.23215 -11.11905 -10.94171 -10.54774 -10.08339 -9.19690 -8.17342 -6.26480 1.40230 1.42156 1.50198 1.50925 2.41129 2.42328 3.10744 3.24767 3.54100 3.71896 4.10199 4.17357 4.41593 4.61826 4.68601 4.72154 4.79265 4.92274 4.97013 5.15429 5.28995 5.42973 5.56317 5.60278 5.82715 5.89353 5.98231 6.23873 6.39883 6.60793 6.90266 7.22622 7.42518 8.94072 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.027716 B = 0.009146 C = 0.007276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.018478 B = 3060.853574 C = 3847.481589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.096 3.904 3 H 0.031 0.969 4 C 0.025 3.975 5 C -0.530 4.530 6 H 0.061 0.939 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.951 3.049 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.267 1.267 13 N -0.666 5.666 14 C 0.082 3.918 15 H 0.107 0.893 16 C 0.114 3.886 17 N -0.714 5.714 18 C 0.520 3.480 19 O -0.590 6.590 20 C -0.188 4.188 21 H 0.067 0.933 22 H 0.049 0.951 23 H 0.052 0.948 24 H 0.000 1.000 25 H -0.005 1.005 26 H 0.262 0.738 27 H 0.349 0.651 28 H 0.083 0.917 29 H 0.112 0.888 30 H 0.419 0.581 31 H 0.096 0.904 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.404 2.211 12.377 13.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.014 4.014 3 H 0.049 0.951 4 C -0.013 4.013 5 C -0.568 4.568 6 H 0.079 0.921 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.777 3.223 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.192 1.192 13 N -0.298 5.298 14 C -0.030 4.030 15 H 0.125 0.875 16 C -0.010 4.010 17 N -0.368 5.368 18 C 0.307 3.693 19 O -0.471 6.471 20 C -0.230 4.230 21 H 0.086 0.914 22 H 0.068 0.932 23 H 0.071 0.929 24 H 0.019 0.981 25 H 0.013 0.987 26 H 0.070 0.930 27 H 0.170 0.830 28 H 0.101 0.899 29 H 0.130 0.870 30 H 0.259 0.741 31 H 0.114 0.886 32 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.592 2.200 12.514 13.883 hybrid contribution 1.889 0.365 -0.483 1.984 sum -3.703 2.564 12.031 12.847 Atomic orbital electron populations 1.21743 0.94172 1.01706 1.01145 1.21445 0.95219 0.95074 0.89614 0.95112 1.19161 0.94588 0.95010 0.92500 1.21564 0.93395 1.33684 1.08154 0.92091 1.25801 1.02644 0.95112 0.95597 1.70079 1.37281 1.36850 1.12751 0.85659 0.80731 0.78765 0.77156 1.19915 1.21321 1.19195 1.60555 1.34200 1.31004 1.04049 1.22637 0.94304 0.94215 0.91798 0.87498 1.22203 0.95386 0.96181 0.87227 1.46185 1.35696 1.44473 1.10495 1.21023 0.79653 0.77949 0.90687 1.90701 1.36895 1.44492 1.75037 1.23200 1.01378 1.04900 0.93496 0.91381 0.93238 0.92928 0.98112 0.98693 0.92955 0.83030 0.89870 0.87000 0.74056 0.88578 0.88408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.89 9.40 71.98 0.68 -3.22 16 2 C 0.10 3.47 2.46 44.91 0.11 3.58 16 3 H 0.03 1.13 7.86 -2.39 -0.02 1.12 16 4 C 0.02 1.20 4.57 29.85 0.14 1.34 16 5 C -0.53 -27.65 8.12 25.60 0.21 -27.44 16 6 H 0.06 3.02 7.49 -2.91 -0.02 2.99 16 7 C 0.01 0.37 5.46 84.65 0.46 0.83 16 8 N -0.93 -54.63 13.29 21.45 0.28 -54.34 16 9 Si 0.95 43.09 29.54 68.60 2.03 45.12 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 12 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 13 N -0.67 -20.78 6.17 -463.66 -2.86 -23.64 16 14 C 0.08 1.99 3.24 46.05 0.15 2.13 16 15 H 0.11 2.34 7.25 -2.39 -0.02 2.32 16 16 C 0.11 2.09 7.51 86.83 0.65 2.75 16 17 N -0.71 -14.64 6.24 -459.81 -2.87 -17.51 16 18 C 0.52 15.12 8.43 87.90 0.74 15.86 16 19 O -0.59 -22.23 18.03 -3.06 -0.06 -22.29 16 20 C -0.19 -5.25 6.55 30.67 0.20 -5.05 16 21 H 0.07 1.63 7.53 -2.39 -0.02 1.61 16 22 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 25 H -0.01 -0.28 8.14 -2.38 -0.02 -0.30 16 26 H 0.26 14.61 8.31 -92.70 -0.77 13.84 16 27 H 0.35 12.42 6.57 -89.70 -0.59 11.83 16 28 H 0.08 1.57 8.07 -2.39 -0.02 1.55 16 29 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.42 6.75 8.96 -92.70 -0.83 5.92 16 31 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 32 H 0.10 3.00 7.58 -2.39 -0.02 2.99 16 Total: -1.00 -65.01 268.81 -0.44 -65.44 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -0.30 Total: 16.41 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: 3.34 Total: -9.21 kcal Atomic # 7 Polarization: -90.04 SS G_CDS: -5.44 Total: -95.49 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.06 Total: -22.29 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -65.01 -0.44 -65.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695818781.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.463 kcal (2) G-P(sol) polarization free energy of solvation -65.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds