Wall clock time and date at job start Mon Mar 30 2020 02:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47753 * 2 1 4 4 C 1.52996 * 109.47153 * 239.99723 * 2 1 3 5 5 C 1.50702 * 109.47159 * 175.00123 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48501 * 109.47188 * 90.00793 * 9 7 5 11 11 H 1.48501 * 109.47085 * 210.00372 * 9 7 5 12 12 H 1.48498 * 109.47634 * 330.00608 * 9 7 5 13 13 N 1.46908 * 109.47004 * 120.00132 * 2 1 3 14 14 C 1.46901 * 110.99611 * 274.99818 * 13 2 1 15 15 H 1.08997 * 110.43841 * 34.29917 * 14 13 2 16 16 C 1.54631 * 110.48217 * 156.84151 * 14 13 2 17 17 C 1.54482 * 101.76595 * 93.88213 * 16 14 13 18 18 N 1.46758 * 105.47476 * 25.41344 * 17 16 14 19 19 C 1.34743 * 111.35353 * 343.01860 * 18 17 16 20 20 O 1.21284 * 125.12543 * 180.38834 * 19 18 17 21 21 H 1.09001 * 109.47101 * 300.00282 * 1 2 3 22 22 H 1.09000 * 109.46774 * 59.99989 * 1 2 3 23 23 H 1.08993 * 109.47136 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47066 * 55.00326 * 4 2 1 25 25 H 1.08994 * 109.47405 * 295.00156 * 4 2 1 26 26 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 27 27 H 1.00903 * 110.99875 * 38.95027 * 13 2 1 28 28 H 1.09003 * 110.96753 * 211.99766 * 16 14 13 29 29 H 1.08998 * 110.96873 * 335.72118 * 16 14 13 30 30 H 1.08994 * 110.24730 * 144.41577 * 17 16 14 31 31 H 1.09000 * 110.24102 * 266.41205 * 17 16 14 32 32 H 0.96998 * 124.35479 * 162.98071 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 1 4.0790 -0.0862 -0.5391 7 6 4.2309 -1.1981 -2.3550 8 7 3.5768 -1.8423 -3.2967 9 14 6.0931 -1.0729 -2.4295 10 1 6.6958 -2.2260 -1.7136 11 1 6.5337 -1.0856 -3.8476 12 1 6.5304 0.1923 -1.7867 13 7 2.0196 -0.6926 1.1995 14 6 2.0824 0.2226 2.3469 15 1 1.2707 0.9485 2.2996 16 6 2.0241 -0.5688 3.6740 17 6 3.5235 -0.7489 3.9996 18 7 4.2061 0.3637 3.3289 19 6 3.4207 0.9268 2.3899 20 8 3.7379 1.8595 1.6826 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.6054 -0.2618 -2.1369 25 1 1.7516 -1.7715 -1.2055 26 1 4.0615 -2.2523 -4.0302 27 1 1.4494 -1.4980 1.4101 28 1 1.5229 0.0087 4.4509 29 1 1.5366 -1.5333 3.5320 30 1 3.6847 -0.6963 5.0762 31 1 3.8822 -1.7015 3.6098 32 1 5.1074 0.6571 3.5351 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695861931.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:11 Heat of formation + Delta-G solvation = -40.971436 kcal Electronic energy + Delta-G solvation = -14586.723052 eV Core-core repulsion = 12160.800377 eV Total energy + Delta-G solvation = -2425.922675 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.98033 -36.44365 -35.71891 -32.64728 -31.12016 -28.59821 -27.18969 -25.91020 -22.92683 -21.86486 -19.85206 -19.61228 -17.02833 -16.26305 -15.99703 -14.87494 -14.54633 -14.22993 -13.98446 -13.50168 -13.11695 -12.65175 -12.42733 -12.38588 -11.83248 -11.62274 -11.34263 -11.29774 -10.80306 -10.52068 -10.31699 -9.97901 -9.57471 -9.14009 -8.91270 -8.78219 -8.16395 -7.67490 -5.78983 -3.74921 3.01780 3.45760 3.50853 3.59283 3.66770 4.53045 4.64422 4.66238 4.75850 5.01436 5.38970 5.52969 5.58892 5.67413 5.78453 5.80801 5.92585 5.96069 6.06482 6.51565 6.66310 7.07718 7.10856 7.31115 7.51696 7.71204 8.01646 8.07575 8.23117 8.67302 8.70690 9.31606 9.86029 11.33288 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.027457 B = 0.010924 C = 0.008865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.527897 B = 2562.649793 C = 3157.684607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.084 3.916 3 H 0.074 0.926 4 C 0.035 3.965 5 C -0.482 4.482 6 H 0.059 0.941 7 C 0.048 3.952 8 N -0.907 5.907 9 Si 0.887 3.113 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.644 5.644 14 C 0.052 3.948 15 H 0.070 0.930 16 C -0.137 4.137 17 C 0.112 3.888 18 N -0.736 5.736 19 C 0.537 3.463 20 O -0.523 6.523 21 H 0.037 0.963 22 H 0.058 0.942 23 H 0.051 0.949 24 H 0.018 0.982 25 H 0.016 0.984 26 H 0.256 0.744 27 H 0.339 0.661 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.305 0.762 15.563 16.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.025 4.025 3 H 0.092 0.908 4 C -0.002 4.002 5 C -0.520 4.520 6 H 0.077 0.923 7 C -0.150 4.150 8 N -0.548 5.548 9 Si 0.716 3.284 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.278 5.278 14 C -0.061 4.061 15 H 0.088 0.912 16 C -0.175 4.175 17 C -0.013 4.013 18 N -0.393 5.393 19 C 0.322 3.678 20 O -0.396 6.396 21 H 0.056 0.944 22 H 0.077 0.923 23 H 0.070 0.930 24 H 0.037 0.963 25 H 0.035 0.965 26 H 0.065 0.935 27 H 0.159 0.841 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -3.568 1.223 14.822 15.294 hybrid contribution 0.537 0.063 0.206 0.579 sum -3.030 1.286 15.028 15.385 Atomic orbital electron populations 1.22543 0.99286 1.01144 1.00786 1.21958 0.89937 0.98985 0.91640 0.90754 1.19089 0.96329 0.95165 0.89622 1.21189 0.91870 1.32039 1.06934 0.92283 1.24984 0.97875 0.96076 0.96077 1.69970 1.35004 1.37309 1.12552 0.86653 0.86747 0.78291 0.76674 1.21061 1.21625 1.20020 1.60379 1.58384 1.07631 1.01362 1.22183 0.95538 0.96196 0.92222 0.91198 1.22810 0.96335 1.01647 0.96676 1.21895 0.92157 0.90598 0.96678 1.46164 1.17942 1.34998 1.40162 1.20852 0.87055 0.81886 0.78026 1.90734 1.77762 1.28735 1.42385 0.94431 0.92261 0.92974 0.96343 0.96538 0.93490 0.84144 0.90129 0.89017 0.91100 0.90787 0.75728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.01 9.15 37.16 0.34 -2.67 16 2 C 0.08 1.76 2.39 -67.71 -0.16 1.60 16 3 H 0.07 1.75 7.43 -51.93 -0.39 1.36 16 4 C 0.04 0.93 4.65 -27.88 -0.13 0.80 16 5 C -0.48 -14.34 8.84 -34.44 -0.30 -14.64 16 6 H 0.06 1.83 7.74 -52.49 -0.41 1.42 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 8 N -0.91 -28.33 13.29 55.43 0.74 -27.59 16 9 Si 0.89 23.39 29.54 -169.99 -5.02 18.37 16 10 H -0.28 -7.34 7.11 56.52 0.40 -6.93 16 11 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 12 H -0.28 -7.31 7.11 56.52 0.40 -6.91 16 13 N -0.64 -11.82 5.81 -99.74 -0.58 -12.40 16 14 C 0.05 0.81 3.02 -67.72 -0.20 0.61 16 15 H 0.07 1.06 7.20 -51.93 -0.37 0.68 16 16 C -0.14 -1.41 6.84 -25.10 -0.17 -1.58 16 17 C 0.11 1.17 7.78 -3.12 -0.02 1.15 16 18 N -0.74 -10.40 6.25 -59.12 -0.37 -10.77 16 19 C 0.54 9.93 7.98 -10.71 -0.09 9.84 16 20 O -0.52 -12.19 17.67 5.55 0.10 -12.09 16 21 H 0.04 0.54 7.47 -51.93 -0.39 0.15 16 22 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.05 0.82 8.13 -51.93 -0.42 0.40 16 24 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 27 H 0.34 5.38 7.83 -39.29 -0.31 5.07 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.09 0.81 7.58 -51.93 -0.39 0.42 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.40 5.09 8.96 -40.82 -0.37 4.72 16 LS Contribution 269.50 15.07 4.06 4.06 Total: -1.00 -35.36 269.50 -6.63 -41.99 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -4.72 Total: 1.96 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -0.84 Total: -3.52 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: -0.21 Total: -50.76 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.10 Total: -12.09 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -5.02 Total: 18.37 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -35.36 -6.63 -41.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695861931.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.019 kcal (2) G-P(sol) polarization free energy of solvation -35.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds