Wall clock time and date at job start Mon Mar 30 2020 02:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47753 * 2 1 4 4 C 1.52996 * 109.47153 * 239.99723 * 2 1 3 5 5 C 1.50702 * 109.47159 * 175.00123 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48501 * 109.47188 * 90.00793 * 9 7 5 11 11 H 1.48501 * 109.47085 * 210.00372 * 9 7 5 12 12 H 1.48498 * 109.47634 * 330.00608 * 9 7 5 13 13 N 1.46908 * 109.47004 * 120.00132 * 2 1 3 14 14 C 1.46901 * 110.99611 * 274.99818 * 13 2 1 15 15 H 1.08997 * 110.43841 * 34.29917 * 14 13 2 16 16 C 1.54631 * 110.48217 * 156.84151 * 14 13 2 17 17 C 1.54482 * 101.76595 * 93.88213 * 16 14 13 18 18 N 1.46758 * 105.47476 * 25.41344 * 17 16 14 19 19 C 1.34743 * 111.35353 * 343.01860 * 18 17 16 20 20 O 1.21284 * 125.12543 * 180.38834 * 19 18 17 21 21 H 1.09001 * 109.47101 * 300.00282 * 1 2 3 22 22 H 1.09000 * 109.46774 * 59.99989 * 1 2 3 23 23 H 1.08993 * 109.47136 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47066 * 55.00326 * 4 2 1 25 25 H 1.08994 * 109.47405 * 295.00156 * 4 2 1 26 26 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 27 27 H 1.00903 * 110.99875 * 38.95027 * 13 2 1 28 28 H 1.09003 * 110.96753 * 211.99766 * 16 14 13 29 29 H 1.08998 * 110.96873 * 335.72118 * 16 14 13 30 30 H 1.08994 * 110.24730 * 144.41577 * 17 16 14 31 31 H 1.09000 * 110.24102 * 266.41205 * 17 16 14 32 32 H 0.96998 * 124.35479 * 162.98071 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 1 4.0790 -0.0862 -0.5391 7 6 4.2309 -1.1981 -2.3550 8 7 3.5768 -1.8423 -3.2967 9 14 6.0931 -1.0729 -2.4295 10 1 6.6958 -2.2260 -1.7136 11 1 6.5337 -1.0856 -3.8476 12 1 6.5304 0.1923 -1.7867 13 7 2.0196 -0.6926 1.1995 14 6 2.0824 0.2226 2.3469 15 1 1.2707 0.9485 2.2996 16 6 2.0241 -0.5688 3.6740 17 6 3.5235 -0.7489 3.9996 18 7 4.2061 0.3637 3.3289 19 6 3.4207 0.9268 2.3899 20 8 3.7379 1.8595 1.6826 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.6054 -0.2618 -2.1369 25 1 1.7516 -1.7715 -1.2055 26 1 4.0615 -2.2523 -4.0302 27 1 1.4494 -1.4980 1.4101 28 1 1.5229 0.0087 4.4509 29 1 1.5366 -1.5333 3.5320 30 1 3.6847 -0.6963 5.0762 31 1 3.8822 -1.7015 3.6098 32 1 5.1074 0.6571 3.5351 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695861931.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:11 Heat of formation + Delta-G solvation = -69.886367 kcal Electronic energy + Delta-G solvation = -14587.976897 eV Core-core repulsion = 12160.800377 eV Total energy + Delta-G solvation = -2427.176520 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.24056 -38.00693 -37.11144 -34.77985 -32.61422 -29.89761 -29.05685 -27.16139 -25.02682 -22.87926 -21.39524 -21.04971 -18.44112 -18.25365 -17.40856 -16.61722 -16.10099 -15.70296 -15.45999 -14.82702 -14.53971 -14.18455 -14.05741 -13.72759 -13.37940 -13.21662 -13.03576 -12.62905 -12.46684 -12.34485 -12.08524 -11.83391 -11.20578 -11.13323 -10.86795 -10.50260 -9.96681 -9.11431 -8.12320 -6.15321 1.33967 1.35933 1.48242 1.62303 2.44252 2.57024 3.19386 3.43058 3.54289 3.67621 4.10985 4.27888 4.37367 4.48228 4.58569 4.61711 4.81268 4.98396 5.04179 5.18159 5.24505 5.26770 5.48919 5.65926 5.88695 5.99093 6.09641 6.24376 6.43174 6.73937 6.97468 7.37580 7.49271 8.99541 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.027457 B = 0.010924 C = 0.008865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.527897 B = 2562.649793 C = 3157.684607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.096 3.904 3 H 0.042 0.958 4 C 0.041 3.959 5 C -0.494 4.494 6 H 0.040 0.960 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.950 3.050 10 H -0.270 1.270 11 H -0.279 1.279 12 H -0.282 1.282 13 N -0.660 5.660 14 C 0.051 3.949 15 H 0.074 0.926 16 C -0.120 4.120 17 C 0.104 3.896 18 N -0.726 5.726 19 C 0.516 3.484 20 O -0.589 6.589 21 H 0.068 0.932 22 H 0.052 0.948 23 H 0.065 0.935 24 H -0.010 1.010 25 H 0.002 0.998 26 H 0.260 0.740 27 H 0.354 0.646 28 H 0.112 0.888 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.071 0.929 32 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.613 -0.242 17.893 18.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.014 4.014 3 H 0.060 0.940 4 C 0.003 3.997 5 C -0.533 4.533 6 H 0.059 0.941 7 C -0.199 4.199 8 N -0.578 5.578 9 Si 0.777 3.223 10 H -0.196 1.196 11 H -0.205 1.205 12 H -0.208 1.208 13 N -0.296 5.296 14 C -0.062 4.062 15 H 0.092 0.908 16 C -0.158 4.158 17 C -0.019 4.019 18 N -0.381 5.381 19 C 0.302 3.698 20 O -0.468 6.468 21 H 0.087 0.913 22 H 0.071 0.929 23 H 0.084 0.916 24 H 0.008 0.992 25 H 0.020 0.980 26 H 0.068 0.932 27 H 0.176 0.824 28 H 0.130 0.870 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.090 0.910 32 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -3.879 0.164 17.207 17.640 hybrid contribution 0.663 0.362 -0.473 0.892 sum -3.216 0.526 16.734 17.048 Atomic orbital electron populations 1.22379 0.95647 1.02436 1.02047 1.21505 0.92708 0.96382 0.90777 0.93960 1.18959 0.94637 0.94552 0.91530 1.21388 0.93691 1.31670 1.06507 0.94144 1.25761 1.02499 0.95828 0.95795 1.70069 1.36748 1.37954 1.13053 0.85669 0.81343 0.78152 0.77147 1.19585 1.20484 1.20794 1.60049 1.59080 1.08745 1.01685 1.22234 0.93928 0.96409 0.93663 0.90777 1.22890 0.96605 1.02335 0.93988 1.22252 0.91938 0.88899 0.98782 1.46295 1.18016 1.34944 1.38829 1.21582 0.88835 0.81455 0.77954 1.90684 1.79313 1.31701 1.45100 0.91332 0.92860 0.91599 0.99170 0.97977 0.93165 0.82367 0.86954 0.86813 0.86809 0.91036 0.75150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.37 9.15 71.98 0.66 -4.71 16 2 C 0.10 4.08 2.39 44.91 0.11 4.19 16 3 H 0.04 2.06 7.43 -2.39 -0.02 2.05 16 4 C 0.04 2.22 4.65 29.85 0.14 2.35 16 5 C -0.49 -30.26 8.84 25.60 0.23 -30.03 16 6 H 0.04 2.59 7.74 -2.91 -0.02 2.57 16 7 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 8 N -0.94 -59.28 13.29 21.45 0.28 -59.00 16 9 Si 0.95 48.68 29.54 68.60 2.03 50.71 16 10 H -0.27 -13.18 7.11 99.48 0.71 -12.47 16 11 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 12 H -0.28 -14.69 7.11 99.48 0.71 -13.99 16 13 N -0.66 -23.62 5.81 -469.49 -2.73 -26.35 16 14 C 0.05 1.49 3.02 44.91 0.14 1.63 16 15 H 0.07 2.10 7.20 -2.39 -0.02 2.08 16 16 C -0.12 -1.96 6.84 31.65 0.22 -1.74 16 17 C 0.10 1.80 7.78 86.83 0.68 2.47 16 18 N -0.73 -19.40 6.25 -459.37 -2.87 -22.27 16 19 C 0.52 19.03 7.98 87.85 0.70 19.73 16 20 O -0.59 -28.63 17.67 -3.04 -0.05 -28.68 16 21 H 0.07 1.80 7.47 -2.39 -0.02 1.78 16 22 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.07 1.95 8.13 -2.39 -0.02 1.93 16 24 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 25 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 26 H 0.26 15.51 8.31 -92.70 -0.77 14.74 16 27 H 0.35 10.48 7.83 -89.69 -0.70 9.78 16 28 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.11 1.43 7.58 -2.39 -0.02 1.41 16 30 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.41 9.86 8.96 -92.71 -0.83 9.02 16 Total: -1.00 -80.36 269.50 -0.43 -80.79 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -0.41 Total: 10.63 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: 3.32 Total: -5.83 kcal Atomic # 7 Polarization: -102.31 SS G_CDS: -5.31 Total: -107.62 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -0.05 Total: -28.68 kcal Atomic # 14 Polarization: 48.68 SS G_CDS: 2.03 Total: 50.71 kcal Total: -80.36 -0.43 -80.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695861931.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.904 kcal (2) G-P(sol) polarization free energy of solvation -80.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds