Wall clock time and date at job start Mon Mar 30 2020 02:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46812 * 2 1 4 4 C 1.50695 * 109.47063 * 239.99851 * 2 1 3 5 5 H 1.07998 * 120.00418 * 245.62304 * 4 2 1 6 6 C 1.37879 * 120.00201 * 65.62961 * 4 2 1 7 7 N 1.31514 * 120.00393 * 197.18198 * 6 4 2 8 8 Si 1.86804 * 119.99786 * 17.45333 * 6 4 2 9 9 H 1.48502 * 109.46953 * 179.73110 * 8 6 4 10 10 H 1.48503 * 109.46948 * 299.72609 * 8 6 4 11 11 H 1.48501 * 109.46997 * 59.72834 * 8 6 4 12 12 N 1.46502 * 109.47016 * 119.99690 * 2 1 3 13 13 C 1.34775 * 120.00053 * 275.00255 * 12 2 1 14 14 O 1.21587 * 120.00358 * 359.97438 * 13 12 2 15 15 N 1.34777 * 119.99964 * 180.02562 * 13 12 2 16 16 C 1.46500 * 120.00139 * 179.97438 * 15 13 12 17 17 C 1.52995 * 109.47151 * 179.97438 * 16 15 13 18 18 C 1.53001 * 117.49791 * 243.62510 * 17 16 15 19 19 C 1.52999 * 117.49786 * 175.00274 * 17 16 15 20 20 H 1.09000 * 109.46665 * 186.33884 * 1 2 3 21 21 H 1.08994 * 109.46957 * 306.33629 * 1 2 3 22 22 H 1.09002 * 109.47065 * 66.34399 * 1 2 3 23 23 H 0.97001 * 119.99221 * 355.17115 * 7 6 4 24 24 H 0.96996 * 119.99659 * 94.99859 * 12 2 1 25 25 H 0.97002 * 119.99485 * 0.02562 * 15 13 12 26 26 H 1.09001 * 109.46780 * 300.00130 * 16 15 13 27 27 H 1.09004 * 109.46487 * 60.00000 * 16 15 13 28 28 H 1.09004 * 115.55263 * 29.32900 * 17 16 15 29 29 H 1.09000 * 117.49914 * 359.97438 * 18 17 16 30 30 H 1.09007 * 117.49786 * 145.02392 * 18 17 16 31 31 H 1.09000 * 117.49527 * 214.98075 * 19 17 16 32 32 H 1.09000 * 117.49943 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5763 -1.6384 -1.1340 6 6 1.7977 -0.1756 -2.4794 7 7 1.9225 -0.9278 -3.5509 8 14 1.3097 1.6194 -2.6501 9 1 1.1226 1.9471 -4.0864 10 1 0.0398 1.8589 -1.9184 11 1 2.3785 2.4792 -2.0813 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8583 1.1617 2.4117 15 7 2.5968 -0.6534 3.4575 16 6 2.7372 0.0776 4.7193 17 6 3.2614 -0.8686 5.8013 18 6 2.3497 -1.1478 6.9978 19 6 3.5881 -0.2659 7.1691 20 1 -0.3633 -1.0214 0.1135 21 1 -0.3633 0.6089 0.8278 22 1 -0.3633 0.4124 -0.9413 23 1 2.2471 -1.8383 -3.4691 24 1 2.2490 -1.6317 1.1527 25 1 2.8282 -1.5944 3.4137 26 1 3.4382 0.9015 4.5858 27 1 1.7666 0.4716 5.0208 28 1 3.8917 -1.6845 5.4472 29 1 1.3766 -0.6570 7.0144 30 1 2.3800 -2.1476 7.4312 31 1 4.4332 -0.6854 7.7150 32 1 3.4300 0.8049 7.2980 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701022039.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:46 Heat of formation + Delta-G solvation = -15.449999 kcal Electronic energy + Delta-G solvation = -13901.731133 eV Core-core repulsion = 11476.915151 eV Total energy + Delta-G solvation = -2424.815982 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.40724 -37.63690 -35.01933 -33.67323 -32.32076 -29.60727 -26.50512 -24.72755 -22.60067 -21.18255 -20.97498 -19.64109 -18.25636 -17.02219 -16.34222 -15.33705 -14.74064 -14.29202 -14.17401 -13.55894 -13.17069 -13.06413 -12.51204 -12.10105 -11.75421 -11.69392 -11.46984 -11.35623 -10.67806 -10.42769 -10.32153 -9.97186 -9.76493 -9.46636 -9.03830 -8.74539 -8.27727 -7.98764 -6.54722 -4.17159 3.24011 3.43081 3.48974 3.61968 3.66169 3.89643 4.45808 4.50638 4.70811 4.74885 5.01414 5.16814 5.21826 5.41255 5.57326 5.68363 5.81150 5.90039 6.06265 6.45193 6.63380 6.75427 6.84282 6.99140 7.25902 7.48574 7.61015 7.90538 8.28221 8.76240 8.83662 9.30548 9.52270 10.86249 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.067079 B = 0.006008 C = 0.005826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.319069 B = 4659.131219 C = 4804.643167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.258 3.742 3 H 0.040 0.960 4 C -0.615 4.615 5 H 0.060 0.940 6 C 0.038 3.962 7 N -0.900 5.900 8 Si 1.043 2.957 9 H -0.284 1.284 10 H -0.271 1.271 11 H -0.280 1.280 12 N -0.720 5.720 13 C 0.695 3.305 14 O -0.604 6.604 15 N -0.755 5.755 16 C 0.172 3.828 17 C -0.167 4.167 18 C -0.178 4.178 19 C -0.172 4.172 20 H 0.042 0.958 21 H 0.029 0.971 22 H 0.061 0.939 23 H 0.268 0.732 24 H 0.388 0.612 25 H 0.392 0.608 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.109 0.891 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.677 -1.454 17.349 17.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.154 3.846 3 H 0.058 0.942 4 C -0.653 4.653 5 H 0.078 0.922 6 C -0.168 4.168 7 N -0.533 5.533 8 Si 0.871 3.129 9 H -0.210 1.210 10 H -0.197 1.197 11 H -0.206 1.206 12 N -0.372 5.372 13 C 0.395 3.605 14 O -0.484 6.484 15 N -0.412 5.412 16 C 0.047 3.953 17 C -0.185 4.185 18 C -0.215 4.215 19 C -0.210 4.210 20 H 0.061 0.939 21 H 0.048 0.952 22 H 0.080 0.920 23 H 0.078 0.922 24 H 0.221 0.779 25 H 0.225 0.775 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.127 0.873 29 H 0.115 0.885 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.944 0.806 16.233 16.280 hybrid contribution 0.769 -2.249 1.134 2.633 sum 1.713 -1.443 17.367 17.511 Atomic orbital electron populations 1.22517 0.99157 0.99986 1.00257 1.18873 0.90274 0.93922 0.81560 0.94224 1.22094 1.41585 1.10506 0.91152 0.92152 1.25691 0.94303 1.05128 0.91692 1.70888 1.41228 1.09892 1.31286 0.84066 0.77694 0.75091 0.76062 1.20966 1.19721 1.20612 1.45513 1.69397 1.13342 1.08910 1.16156 0.78535 0.85317 0.80532 1.90851 1.58057 1.14604 1.84841 1.45124 1.73222 1.13541 1.09325 1.20595 1.00473 0.93064 0.81146 1.22488 1.03868 1.02320 0.89858 1.23083 0.95387 1.01095 1.01946 1.22942 0.99577 0.99863 0.98614 0.93880 0.95186 0.92019 0.92200 0.77926 0.77469 0.91603 0.91887 0.87308 0.88515 0.88790 0.88608 0.88440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.78 9.16 37.16 0.34 -3.44 16 2 C 0.26 6.45 2.14 -69.08 -0.15 6.30 16 3 H 0.04 1.08 6.23 -51.93 -0.32 0.76 16 4 C -0.62 -17.03 9.00 -34.44 -0.31 -17.34 16 5 H 0.06 1.74 7.96 -52.49 -0.42 1.32 16 6 C 0.04 1.09 5.29 -17.82 -0.09 1.00 16 7 N -0.90 -27.11 13.70 55.43 0.76 -26.35 16 8 Si 1.04 25.62 26.29 -169.99 -4.47 21.15 16 9 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.27 -6.26 5.76 56.52 0.33 -5.93 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 N -0.72 -15.32 5.07 -59.81 -0.30 -15.62 16 13 C 0.69 14.29 8.53 -86.92 -0.74 13.55 16 14 O -0.60 -14.77 16.01 5.29 0.08 -14.69 16 15 N -0.75 -11.44 5.56 -65.23 -0.36 -11.80 16 16 C 0.17 2.27 5.96 -4.04 -0.02 2.24 16 17 C -0.17 -1.61 5.85 -90.62 -0.53 -2.14 16 18 C -0.18 -1.51 10.18 -26.73 -0.27 -1.78 16 19 C -0.17 -1.42 10.25 -26.73 -0.27 -1.69 16 20 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 21 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.06 1.47 4.88 -51.93 -0.25 1.22 16 23 H 0.27 7.98 8.73 -40.82 -0.36 7.62 16 24 H 0.39 7.28 8.54 -40.82 -0.35 6.93 16 25 H 0.39 4.79 8.41 -40.82 -0.34 4.45 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.88 7.87 -51.93 -0.41 0.47 16 28 H 0.11 0.97 8.04 -51.93 -0.42 0.55 16 29 H 0.10 0.84 8.03 -51.93 -0.42 0.42 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 270.50 15.07 4.08 4.08 Total: -1.00 -32.43 270.50 -6.96 -39.39 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -4.69 Total: 7.14 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -2.05 Total: -3.31 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: 0.09 Total: -53.77 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: 0.08 Total: -14.69 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -4.47 Total: 21.15 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -32.43 -6.96 -39.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701022039.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.940 kcal (2) G-P(sol) polarization free energy of solvation -32.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds