Wall clock time and date at job start Mon Mar 30 2020 02:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46812 * 2 1 4 4 C 1.50695 * 109.47063 * 239.99851 * 2 1 3 5 5 H 1.07998 * 120.00418 * 245.62304 * 4 2 1 6 6 C 1.37879 * 120.00201 * 65.62961 * 4 2 1 7 7 N 1.31514 * 120.00393 * 197.18198 * 6 4 2 8 8 Si 1.86804 * 119.99786 * 17.45333 * 6 4 2 9 9 H 1.48502 * 109.46953 * 179.73110 * 8 6 4 10 10 H 1.48503 * 109.46948 * 299.72609 * 8 6 4 11 11 H 1.48501 * 109.46997 * 59.72834 * 8 6 4 12 12 N 1.46502 * 109.47016 * 119.99690 * 2 1 3 13 13 C 1.34775 * 120.00053 * 275.00255 * 12 2 1 14 14 O 1.21587 * 120.00358 * 359.97438 * 13 12 2 15 15 N 1.34777 * 119.99964 * 180.02562 * 13 12 2 16 16 C 1.46500 * 120.00139 * 179.97438 * 15 13 12 17 17 C 1.52995 * 109.47151 * 179.97438 * 16 15 13 18 18 C 1.53001 * 117.49791 * 243.62510 * 17 16 15 19 19 C 1.52999 * 117.49786 * 175.00274 * 17 16 15 20 20 H 1.09000 * 109.46665 * 186.33884 * 1 2 3 21 21 H 1.08994 * 109.46957 * 306.33629 * 1 2 3 22 22 H 1.09002 * 109.47065 * 66.34399 * 1 2 3 23 23 H 0.97001 * 119.99221 * 355.17115 * 7 6 4 24 24 H 0.96996 * 119.99659 * 94.99859 * 12 2 1 25 25 H 0.97002 * 119.99485 * 0.02562 * 15 13 12 26 26 H 1.09001 * 109.46780 * 300.00130 * 16 15 13 27 27 H 1.09004 * 109.46487 * 60.00000 * 16 15 13 28 28 H 1.09004 * 115.55263 * 29.32900 * 17 16 15 29 29 H 1.09000 * 117.49914 * 359.97438 * 18 17 16 30 30 H 1.09007 * 117.49786 * 145.02392 * 18 17 16 31 31 H 1.09000 * 117.49527 * 214.98075 * 19 17 16 32 32 H 1.09000 * 117.49943 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5763 -1.6384 -1.1340 6 6 1.7977 -0.1756 -2.4794 7 7 1.9225 -0.9278 -3.5509 8 14 1.3097 1.6194 -2.6501 9 1 1.1226 1.9471 -4.0864 10 1 0.0398 1.8589 -1.9184 11 1 2.3785 2.4792 -2.0813 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8583 1.1617 2.4117 15 7 2.5968 -0.6534 3.4575 16 6 2.7372 0.0776 4.7193 17 6 3.2614 -0.8686 5.8013 18 6 2.3497 -1.1478 6.9978 19 6 3.5881 -0.2659 7.1691 20 1 -0.3633 -1.0214 0.1135 21 1 -0.3633 0.6089 0.8278 22 1 -0.3633 0.4124 -0.9413 23 1 2.2471 -1.8383 -3.4691 24 1 2.2490 -1.6317 1.1527 25 1 2.8282 -1.5944 3.4137 26 1 3.4382 0.9015 4.5858 27 1 1.7666 0.4716 5.0208 28 1 3.8917 -1.6845 5.4472 29 1 1.3766 -0.6570 7.0144 30 1 2.3800 -2.1476 7.4312 31 1 4.4332 -0.6854 7.7150 32 1 3.4300 0.8049 7.2980 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701022039.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:46 Heat of formation + Delta-G solvation = -39.271757 kcal Electronic energy + Delta-G solvation = -13902.764122 eV Core-core repulsion = 11476.915151 eV Total energy + Delta-G solvation = -2425.848971 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.98484 -38.55276 -36.85726 -35.10536 -34.37656 -31.43047 -27.72473 -26.80920 -23.25550 -22.92188 -21.97241 -21.35398 -20.09629 -18.79495 -17.58854 -16.79227 -16.19964 -15.83940 -15.33446 -15.12554 -14.70061 -14.51759 -14.37774 -14.05275 -13.52374 -13.31196 -12.41323 -12.37777 -12.33274 -11.94769 -11.67483 -11.50097 -11.18526 -11.13007 -11.05807 -10.46213 -10.24796 -9.64201 -8.80069 -6.43742 1.47287 1.52497 1.71477 1.87744 2.23817 2.42657 2.88333 3.02012 3.48304 3.72589 4.00397 4.10755 4.28734 4.49300 4.65997 4.73924 4.76359 4.80882 4.81799 5.03891 5.08485 5.21412 5.27854 5.44306 5.55382 5.63225 5.68760 6.00971 6.23010 6.53981 7.25502 7.30046 7.69929 8.60060 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.067079 B = 0.006008 C = 0.005826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.319069 B = 4659.131219 C = 4804.643167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.261 3.739 3 H 0.020 0.980 4 C -0.612 4.612 5 H 0.041 0.959 6 C -0.004 4.004 7 N -0.927 5.927 8 Si 1.074 2.926 9 H -0.280 1.280 10 H -0.247 1.247 11 H -0.275 1.275 12 N -0.720 5.720 13 C 0.693 3.307 14 O -0.644 6.644 15 N -0.734 5.734 16 C 0.171 3.829 17 C -0.174 4.174 18 C -0.174 4.174 19 C -0.164 4.164 20 H 0.051 0.949 21 H 0.036 0.964 22 H 0.057 0.943 23 H 0.258 0.742 24 H 0.400 0.600 25 H 0.409 0.591 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.122 0.878 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.596 -1.554 19.159 19.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.155 3.845 3 H 0.038 0.962 4 C -0.650 4.650 5 H 0.059 0.941 6 C -0.205 4.205 7 N -0.562 5.562 8 Si 0.896 3.104 9 H -0.206 1.206 10 H -0.172 1.172 11 H -0.201 1.201 12 N -0.373 5.373 13 C 0.392 3.608 14 O -0.527 6.527 15 N -0.391 5.391 16 C 0.047 3.953 17 C -0.193 4.193 18 C -0.211 4.211 19 C -0.202 4.202 20 H 0.070 0.930 21 H 0.055 0.945 22 H 0.075 0.925 23 H 0.067 0.933 24 H 0.235 0.765 25 H 0.245 0.755 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.140 0.860 29 H 0.110 0.890 30 H 0.128 0.872 31 H 0.131 0.869 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.881 0.643 18.099 18.132 hybrid contribution 0.855 -2.277 0.658 2.520 sum 1.737 -1.633 18.757 18.908 Atomic orbital electron populations 1.22388 0.97755 1.00696 1.00275 1.18601 0.91250 0.92727 0.81910 0.96189 1.22243 1.40672 1.09692 0.92438 0.94117 1.26822 0.94160 1.07868 0.91674 1.70989 1.43272 1.09741 1.32172 0.83670 0.78765 0.71372 0.76570 1.20581 1.17194 1.20078 1.45241 1.69750 1.13844 1.08444 1.16282 0.78454 0.84829 0.81210 1.90821 1.59810 1.16472 1.85566 1.44971 1.71315 1.14334 1.08464 1.20702 0.99929 0.93667 0.81034 1.22369 1.05143 1.02400 0.89378 1.23160 0.95211 1.01996 1.00691 1.23056 1.00051 1.00017 0.97051 0.92977 0.94492 0.92460 0.93277 0.76513 0.75467 0.92813 0.92806 0.86048 0.88981 0.87218 0.86880 0.88523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.95 9.16 71.98 0.66 -6.29 16 2 C 0.26 12.84 2.14 44.25 0.09 12.93 16 3 H 0.02 1.09 6.23 -2.39 -0.01 1.07 16 4 C -0.61 -33.86 9.00 25.60 0.23 -33.63 16 5 H 0.04 2.36 7.96 -2.91 -0.02 2.34 16 6 C 0.00 -0.26 5.29 84.66 0.45 0.19 16 7 N -0.93 -56.26 13.70 21.45 0.29 -55.97 16 8 Si 1.07 50.97 26.29 68.60 1.80 52.78 16 9 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 10 H -0.25 -10.74 5.76 99.48 0.57 -10.17 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 N -0.72 -29.91 5.07 -461.41 -2.34 -32.25 16 13 C 0.69 27.75 8.53 179.05 1.53 29.28 16 14 O -0.64 -31.17 16.01 -3.99 -0.06 -31.24 16 15 N -0.73 -21.04 5.56 -478.54 -2.66 -23.70 16 16 C 0.17 4.27 5.96 86.38 0.51 4.78 16 17 C -0.17 -2.94 5.85 -10.80 -0.06 -3.01 16 18 C -0.17 -2.47 10.18 30.60 0.31 -2.16 16 19 C -0.16 -2.25 10.25 30.59 0.31 -1.94 16 20 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 21 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 22 H 0.06 2.63 4.88 -2.39 -0.01 2.62 16 23 H 0.26 15.66 8.73 -92.71 -0.81 14.85 16 24 H 0.40 14.54 8.54 -92.71 -0.79 13.75 16 25 H 0.41 9.05 8.41 -92.71 -0.78 8.27 16 26 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.05 1.46 7.87 -2.39 -0.02 1.44 16 28 H 0.12 1.77 8.04 -2.38 -0.02 1.75 16 29 H 0.09 1.41 8.03 -2.39 -0.02 1.39 16 30 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -68.78 270.50 0.45 -68.33 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: -0.62 Total: 21.88 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: 4.04 Total: 0.16 kcal Atomic # 7 Polarization: -107.20 SS G_CDS: -4.71 Total: -111.91 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -0.06 Total: -31.24 kcal Atomic # 14 Polarization: 50.97 SS G_CDS: 1.80 Total: 52.78 kcal Total: -68.78 0.45 -68.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701022039.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.056 kcal (2) G-P(sol) polarization free energy of solvation -68.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds