Wall clock time and date at job start Mon Mar 30 2020 03:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 120.00153 * 2 1 4 4 C 1.50699 * 109.46814 * 269.99767 * 3 2 1 5 5 H 1.08005 * 120.00142 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00268 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99467 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00374 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.47537 * 59.99861 * 8 6 4 10 10 H 1.48502 * 109.47260 * 179.97438 * 8 6 4 11 11 H 1.48508 * 109.46931 * 299.99788 * 8 6 4 12 12 C 1.34777 * 120.00014 * 179.97438 * 2 1 3 13 13 O 1.21285 * 119.99971 * 179.97438 * 12 2 1 14 14 C 1.50700 * 119.99994 * 0.02562 * 12 2 1 15 15 H 1.08995 * 112.85122 * 48.79760 * 14 12 2 16 16 C 1.53784 * 113.61662 * 179.97438 * 14 12 2 17 17 C 1.53778 * 87.08190 * 140.05883 * 16 14 12 18 18 H 1.09003 * 113.61205 * 89.20273 * 17 16 14 19 19 N 1.46905 * 113.61486 * 220.01776 * 17 16 14 20 20 C 1.53783 * 87.08485 * 334.56737 * 17 16 14 21 21 H 1.08998 * 109.47208 * 270.00087 * 1 2 3 22 22 H 1.09001 * 109.47070 * 30.00587 * 1 2 3 23 23 H 1.09001 * 109.46987 * 150.00269 * 1 2 3 24 24 H 1.09000 * 109.47139 * 29.99593 * 3 2 1 25 25 H 1.08994 * 109.47326 * 150.00129 * 3 2 1 26 26 H 0.97004 * 119.99953 * 180.02562 * 7 6 4 27 27 H 1.09001 * 113.61234 * 25.51246 * 16 14 12 28 28 H 1.08999 * 113.61371 * 254.61491 * 16 14 12 29 29 H 1.00901 * 110.99869 * 180.02562 * 19 17 16 30 30 H 1.00896 * 110.99543 * 303.95673 * 19 17 16 31 31 H 1.08994 * 113.61373 * 139.97945 * 20 17 16 32 32 H 1.08996 * 113.61081 * 270.88619 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7036 -1.4208 5 1 2.0982 1.0956 -2.2417 6 6 3.1261 2.8778 -1.6729 7 7 3.5534 3.6180 -0.6733 8 14 3.4368 3.4173 -3.4341 9 1 2.1392 3.5945 -4.1339 10 1 4.1784 4.7039 -3.4342 11 1 4.2396 2.3826 -4.1344 12 6 2.1389 -1.1672 0.0005 13 8 3.3518 -1.1672 0.0001 14 6 1.3854 -2.4723 0.0005 15 1 0.6011 -2.5082 -0.7555 16 6 2.2976 -3.7104 0.0005 17 6 1.3032 -4.3458 0.9865 18 1 0.4969 -4.8951 0.5003 19 7 1.9483 -5.1121 2.0611 20 6 0.9166 -2.9150 1.3967 21 1 -0.3633 0.0000 1.0276 22 1 -0.3633 0.8899 -0.5139 23 1 -0.3633 -0.8900 -0.5138 24 1 1.6085 2.0284 0.5138 25 1 3.1499 1.1384 0.5138 26 1 4.0296 4.4442 -0.8506 27 1 3.2823 -3.5272 0.4307 28 1 2.3433 -4.2190 -0.9624 29 1 1.2614 -5.5110 2.6833 30 1 2.5520 -5.8268 1.6833 31 1 -0.1526 -2.7818 1.5609 32 1 1.5237 -2.5145 2.2085 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703546867.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:11 Heat of formation + Delta-G solvation = -17.259328 kcal Electronic energy + Delta-G solvation = -14274.049102 eV Core-core repulsion = 11849.154661 eV Total energy + Delta-G solvation = -2424.894441 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.83590 -37.37744 -34.69349 -32.61445 -31.94462 -27.99415 -25.96438 -25.54168 -24.70826 -22.24912 -19.51220 -18.24148 -16.67249 -16.41852 -15.76416 -15.38595 -15.08416 -14.63407 -14.32965 -13.56153 -12.82285 -12.34102 -12.28426 -12.11927 -11.77093 -11.48112 -11.22938 -11.09474 -10.88954 -10.75569 -10.48791 -10.19665 -10.10468 -9.59657 -8.86669 -8.69091 -8.39569 -7.56111 -6.00299 -4.05081 3.34124 3.38398 3.40579 3.50039 4.03079 4.46810 4.53685 4.65267 4.77335 4.95947 5.01506 5.32273 5.44426 5.48317 5.81005 5.81634 5.93229 6.00281 6.14268 6.25669 6.28333 6.48550 7.12406 7.14182 7.33385 7.50192 7.61524 7.96505 8.28345 8.51360 8.94944 9.19549 9.59918 11.07745 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.055980 B = 0.006979 C = 0.006789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.061457 B = 4011.036848 C = 4123.568725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.602 5.602 3 C 0.244 3.756 4 C -0.526 4.526 5 H 0.056 0.944 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.515 3.485 13 O -0.541 6.541 14 C -0.137 4.137 15 H 0.105 0.895 16 C -0.109 4.109 17 C 0.056 3.944 18 H 0.060 0.940 19 N -0.838 5.838 20 C -0.107 4.107 21 H 0.043 0.957 22 H 0.071 0.929 23 H 0.056 0.944 24 H 0.031 0.969 25 H 0.043 0.957 26 H 0.263 0.737 27 H 0.103 0.897 28 H 0.065 0.935 29 H 0.337 0.663 30 H 0.341 0.659 31 H 0.067 0.933 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.559 -13.683 2.739 16.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.334 5.334 3 C 0.125 3.875 4 C -0.565 4.565 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.302 3.698 13 O -0.419 6.419 14 C -0.159 4.159 15 H 0.123 0.877 16 C -0.148 4.148 17 C -0.055 4.055 18 H 0.078 0.922 19 N -0.367 5.367 20 C -0.145 4.145 21 H 0.061 0.939 22 H 0.090 0.910 23 H 0.075 0.925 24 H 0.049 0.951 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.122 0.878 28 H 0.084 0.916 29 H 0.149 0.851 30 H 0.154 0.846 31 H 0.086 0.914 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.486 -12.773 2.990 15.104 hybrid contribution -0.517 -0.366 -1.463 1.595 sum -8.004 -13.139 1.526 15.461 Atomic orbital electron populations 1.21609 0.81605 1.02306 1.00290 1.48128 1.06087 1.07829 1.71322 1.19273 0.92574 0.78247 0.97402 1.21410 1.36524 1.06208 0.92331 0.92587 1.24942 0.95379 0.96403 0.97420 1.69930 1.38420 1.14345 1.30769 0.86554 0.78324 0.77802 0.84701 1.20287 1.21160 1.20198 1.20058 0.87869 0.84756 0.77160 1.90651 1.13933 1.87101 1.50193 1.22587 0.99837 0.94004 0.99514 0.87687 1.22912 0.99297 0.94141 0.98405 1.22831 0.96488 0.93724 0.92498 0.92217 1.58819 1.25092 1.32290 1.20527 1.22888 1.00844 0.94677 0.96114 0.93869 0.90992 0.92544 0.95095 0.93887 0.92688 0.87847 0.91620 0.85078 0.84627 0.91391 0.88882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.41 10.25 59.85 0.61 2.03 16 2 N -0.60 -13.28 2.86 -182.96 -0.52 -13.81 16 3 C 0.24 6.63 5.16 -5.19 -0.03 6.60 16 4 C -0.53 -15.34 9.39 -34.44 -0.32 -15.66 16 5 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 8 Si 0.90 22.25 29.54 -169.99 -5.02 17.23 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 C 0.52 11.19 7.20 -10.99 -0.08 11.12 16 13 O -0.54 -14.27 15.48 5.55 0.09 -14.19 16 14 C -0.14 -2.13 2.96 -90.95 -0.27 -2.40 16 15 H 0.11 1.41 6.95 -51.93 -0.36 1.05 16 16 C -0.11 -1.57 7.19 -25.92 -0.19 -1.76 16 17 C 0.06 0.64 4.96 -66.90 -0.33 0.31 16 18 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 19 N -0.84 -8.72 9.58 -3.97 -0.04 -8.76 16 20 C -0.11 -1.40 7.41 -25.91 -0.19 -1.59 16 21 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 22 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 23 H 0.06 0.76 6.22 -51.93 -0.32 0.44 16 24 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 25 H 0.04 1.31 7.42 -51.93 -0.39 0.93 16 26 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 27 H 0.10 1.77 7.44 -51.93 -0.39 1.39 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.34 2.79 9.08 -39.29 -0.36 2.43 16 30 H 0.34 3.06 9.07 -39.29 -0.36 2.70 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.09 1.43 8.10 -51.93 -0.42 1.01 16 LS Contribution 271.12 15.07 4.09 4.09 Total: -1.00 -33.94 271.12 -6.23 -40.17 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -4.66 Total: 1.41 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -0.89 Total: 0.31 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: 0.18 Total: -49.01 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: 0.09 Total: -14.19 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -33.94 -6.23 -40.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703546867.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.912 kcal (2) G-P(sol) polarization free energy of solvation -33.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds