Wall clock time and date at job start Mon Mar 30 2020 03:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 120.00153 * 2 1 4 4 C 1.50699 * 109.46814 * 269.99767 * 3 2 1 5 5 H 1.08005 * 120.00142 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00268 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99467 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00374 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.47537 * 59.99861 * 8 6 4 10 10 H 1.48502 * 109.47260 * 179.97438 * 8 6 4 11 11 H 1.48508 * 109.46931 * 299.99788 * 8 6 4 12 12 C 1.34777 * 120.00014 * 179.97438 * 2 1 3 13 13 O 1.21285 * 119.99971 * 179.97438 * 12 2 1 14 14 C 1.50700 * 119.99994 * 0.02562 * 12 2 1 15 15 H 1.08995 * 112.85122 * 48.79760 * 14 12 2 16 16 C 1.53784 * 113.61662 * 179.97438 * 14 12 2 17 17 C 1.53778 * 87.08190 * 140.05883 * 16 14 12 18 18 H 1.09003 * 113.61205 * 89.20273 * 17 16 14 19 19 N 1.46905 * 113.61486 * 220.01776 * 17 16 14 20 20 C 1.53783 * 87.08485 * 334.56737 * 17 16 14 21 21 H 1.08998 * 109.47208 * 270.00087 * 1 2 3 22 22 H 1.09001 * 109.47070 * 30.00587 * 1 2 3 23 23 H 1.09001 * 109.46987 * 150.00269 * 1 2 3 24 24 H 1.09000 * 109.47139 * 29.99593 * 3 2 1 25 25 H 1.08994 * 109.47326 * 150.00129 * 3 2 1 26 26 H 0.97004 * 119.99953 * 180.02562 * 7 6 4 27 27 H 1.09001 * 113.61234 * 25.51246 * 16 14 12 28 28 H 1.08999 * 113.61371 * 254.61491 * 16 14 12 29 29 H 1.00901 * 110.99869 * 180.02562 * 19 17 16 30 30 H 1.00896 * 110.99543 * 303.95673 * 19 17 16 31 31 H 1.08994 * 113.61373 * 139.97945 * 20 17 16 32 32 H 1.08996 * 113.61081 * 270.88619 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7036 -1.4208 5 1 2.0982 1.0956 -2.2417 6 6 3.1261 2.8778 -1.6729 7 7 3.5534 3.6180 -0.6733 8 14 3.4368 3.4173 -3.4341 9 1 2.1392 3.5945 -4.1339 10 1 4.1784 4.7039 -3.4342 11 1 4.2396 2.3826 -4.1344 12 6 2.1389 -1.1672 0.0005 13 8 3.3518 -1.1672 0.0001 14 6 1.3854 -2.4723 0.0005 15 1 0.6011 -2.5082 -0.7555 16 6 2.2976 -3.7104 0.0005 17 6 1.3032 -4.3458 0.9865 18 1 0.4969 -4.8951 0.5003 19 7 1.9483 -5.1121 2.0611 20 6 0.9166 -2.9150 1.3967 21 1 -0.3633 0.0000 1.0276 22 1 -0.3633 0.8899 -0.5139 23 1 -0.3633 -0.8900 -0.5138 24 1 1.6085 2.0284 0.5138 25 1 3.1499 1.1384 0.5138 26 1 4.0296 4.4442 -0.8506 27 1 3.2823 -3.5272 0.4307 28 1 2.3433 -4.2190 -0.9624 29 1 1.2614 -5.5110 2.6833 30 1 2.5520 -5.8268 1.6833 31 1 -0.1526 -2.7818 1.5609 32 1 1.5237 -2.5145 2.2085 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703546867.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:11 Heat of formation + Delta-G solvation = -43.480145 kcal Electronic energy + Delta-G solvation = -14275.186122 eV Core-core repulsion = 11849.154661 eV Total energy + Delta-G solvation = -2426.031461 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.25644 -38.78063 -36.54978 -34.72665 -32.97004 -29.98650 -27.44439 -26.62458 -26.39144 -24.04414 -20.67866 -19.73163 -18.69735 -18.07349 -17.19722 -16.70126 -16.30737 -16.13794 -16.00857 -15.06727 -14.37430 -14.15988 -13.77647 -13.50966 -13.38338 -13.13986 -12.79975 -12.66016 -12.56748 -12.27988 -12.17747 -11.90006 -11.71166 -11.21109 -10.65590 -10.49284 -9.57997 -9.40508 -8.23301 -6.39130 1.35509 1.40480 1.47930 1.84464 2.32849 2.48438 3.05635 3.50306 3.60337 3.73523 3.83556 4.05559 4.12836 4.45227 4.59902 4.74260 4.80567 4.89529 4.95289 4.99349 5.06081 5.18453 5.23032 5.42110 5.55420 5.85146 6.05051 6.36318 6.68263 6.69111 6.81752 7.27197 7.51513 8.83764 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.055980 B = 0.006979 C = 0.006789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.061457 B = 4011.036848 C = 4123.568725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.610 5.610 3 C 0.257 3.743 4 C -0.545 4.545 5 H 0.053 0.947 6 C 0.005 3.995 7 N -0.930 5.930 8 Si 0.971 3.029 9 H -0.258 1.258 10 H -0.277 1.277 11 H -0.278 1.278 12 C 0.502 3.498 13 O -0.604 6.604 14 C -0.131 4.131 15 H 0.140 0.860 16 C -0.119 4.119 17 C 0.078 3.922 18 H 0.096 0.904 19 N -0.853 5.853 20 C -0.103 4.103 21 H 0.068 0.932 22 H 0.064 0.936 23 H 0.096 0.904 24 H 0.023 0.977 25 H -0.007 1.007 26 H 0.268 0.732 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.352 0.648 30 H 0.350 0.650 31 H 0.102 0.898 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.925 -15.198 1.614 18.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.340 5.340 3 C 0.136 3.864 4 C -0.583 4.583 5 H 0.072 0.928 6 C -0.193 4.193 7 N -0.570 5.570 8 Si 0.795 3.205 9 H -0.182 1.182 10 H -0.202 1.202 11 H -0.204 1.204 12 C 0.291 3.709 13 O -0.486 6.486 14 C -0.153 4.153 15 H 0.158 0.842 16 C -0.157 4.157 17 C -0.033 4.033 18 H 0.114 0.886 19 N -0.386 5.386 20 C -0.141 4.141 21 H 0.087 0.913 22 H 0.083 0.917 23 H 0.114 0.886 24 H 0.041 0.959 25 H 0.011 0.989 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.100 0.900 29 H 0.166 0.834 30 H 0.164 0.836 31 H 0.121 0.879 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.915 -14.314 1.880 17.514 hybrid contribution 0.241 0.101 -1.043 1.075 sum -9.674 -14.213 0.838 17.213 Atomic orbital electron populations 1.21925 0.77816 1.03933 1.02485 1.48190 1.08466 1.06294 1.71062 1.18746 0.90969 0.80650 0.96085 1.21681 1.37097 1.06621 0.92948 0.92836 1.25922 0.94778 0.96359 1.02278 1.70058 1.38857 1.14794 1.33253 0.85418 0.78926 0.77343 0.78813 1.18237 1.20192 1.20359 1.21289 0.87635 0.86551 0.75392 1.90611 1.16986 1.88167 1.52816 1.22717 1.00269 0.90006 1.02277 0.84219 1.22913 0.98127 0.94503 1.00140 1.22697 0.95867 0.93170 0.91599 0.88600 1.58716 1.25978 1.33053 1.20826 1.22876 1.02265 0.95596 0.93386 0.91323 0.91705 0.88567 0.95933 0.98913 0.92343 0.91694 0.89992 0.83379 0.83628 0.87942 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.46 10.25 127.77 1.31 3.77 16 2 N -0.61 -27.16 2.86 -851.13 -2.43 -29.60 16 3 C 0.26 14.58 5.16 85.63 0.44 15.03 16 4 C -0.54 -32.56 9.39 25.60 0.24 -32.32 16 5 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 6 C 0.01 0.32 5.46 84.65 0.46 0.78 16 7 N -0.93 -57.88 13.29 21.45 0.28 -57.59 16 8 Si 0.97 45.83 29.54 68.60 2.03 47.85 16 9 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 12 C 0.50 22.16 7.20 87.66 0.63 22.79 16 13 O -0.60 -33.68 15.48 -3.04 -0.05 -33.73 16 14 C -0.13 -3.79 2.96 -11.01 -0.03 -3.82 16 15 H 0.14 3.09 6.95 -2.39 -0.02 3.07 16 16 C -0.12 -3.24 7.19 31.12 0.22 -3.02 16 17 C 0.08 1.51 4.96 45.44 0.23 1.74 16 18 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 19 N -0.85 -15.70 9.58 -166.48 -1.59 -17.30 16 20 C -0.10 -2.41 7.41 31.12 0.23 -2.18 16 21 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 22 H 0.06 2.08 8.07 -2.39 -0.02 2.06 16 23 H 0.10 2.18 6.22 -2.39 -0.01 2.16 16 24 H 0.02 1.29 8.07 -2.39 -0.02 1.27 16 25 H -0.01 -0.48 7.42 -2.39 -0.02 -0.50 16 26 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 27 H 0.06 2.30 7.44 -2.39 -0.02 2.28 16 28 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.35 4.72 9.08 -89.69 -0.81 3.91 16 30 H 0.35 5.52 9.07 -89.70 -0.81 4.71 16 31 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.06 1.87 8.10 -2.39 -0.02 1.85 16 Total: -1.00 -78.57 271.12 1.47 -77.10 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -0.50 Total: 10.49 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 3.73 Total: 2.77 kcal Atomic # 7 Polarization: -100.74 SS G_CDS: -3.74 Total: -104.48 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -0.05 Total: -33.73 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Total: -78.57 1.47 -77.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703546867.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.618 kcal (2) G-P(sol) polarization free energy of solvation -78.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds