Wall clock time and date at job start Mon Mar 30 2020 03:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47329 * 2 1 4 4 C 1.52998 * 109.47112 * 239.99171 * 2 1 3 5 5 C 1.53005 * 109.46508 * 119.99783 * 2 1 3 6 6 H 1.09010 * 115.54472 * 196.68558 * 5 2 1 7 7 C 1.53000 * 117.50016 * 342.38968 * 5 2 1 8 8 C 1.52993 * 117.50102 * 51.01664 * 5 2 1 9 9 H 1.09005 * 117.49889 * 144.99904 * 8 5 2 10 10 C 1.52996 * 117.50230 * 359.97438 * 8 5 2 11 11 O 1.42892 * 109.47409 * 161.96449 * 10 8 5 12 12 C 1.42905 * 114.00296 * 180.02562 * 11 10 8 13 13 C 1.50702 * 109.47358 * 180.02562 * 12 11 10 14 14 H 1.07997 * 119.99810 * 359.72997 * 13 12 11 15 15 C 1.37877 * 119.99715 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00370 * 359.73107 * 15 13 12 17 17 Si 1.86801 * 119.99574 * 179.72432 * 15 13 12 18 18 H 1.48505 * 109.47091 * 90.00724 * 17 15 13 19 19 H 1.48505 * 109.46913 * 210.00118 * 17 15 13 20 20 H 1.48500 * 109.47390 * 330.00519 * 17 15 13 21 21 H 1.08993 * 109.47383 * 285.49461 * 1 2 3 22 22 H 1.09010 * 109.46724 * 45.49639 * 1 2 3 23 23 H 1.08997 * 109.47038 * 165.49061 * 1 2 3 24 24 H 1.09002 * 109.47320 * 179.97438 * 3 2 1 25 25 H 1.09005 * 109.46842 * 299.99720 * 3 2 1 26 26 H 1.08996 * 109.47563 * 59.99122 * 3 2 1 27 27 H 1.09000 * 109.47566 * 285.33716 * 4 2 1 28 28 H 1.09002 * 109.47292 * 45.34264 * 4 2 1 29 29 H 1.09007 * 109.46669 * 165.33451 * 4 2 1 30 30 H 1.08998 * 117.49872 * 0.02562 * 7 5 2 31 31 H 1.09002 * 117.49886 * 214.98160 * 7 5 2 32 32 H 1.09004 * 109.47103 * 41.96506 * 10 8 5 33 33 H 1.09003 * 109.47292 * 281.96591 * 10 8 5 34 34 H 1.09000 * 109.47102 * 60.00008 * 12 11 10 35 35 H 1.09004 * 109.47088 * 299.99951 * 12 11 10 36 36 H 0.96995 * 120.00301 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0399 -0.7213 1.2494 6 1 3.0848 -0.5413 1.5025 7 6 1.0557 -0.9142 2.4048 8 6 1.4704 -2.1101 1.5452 9 1 2.1405 -2.8439 1.9930 10 6 0.4341 -2.6713 0.5695 11 8 0.3312 -4.0856 0.7453 12 6 -0.6149 -4.7121 -0.1234 13 6 -0.6411 -6.1943 0.1476 14 1 0.0036 -6.6163 0.9043 15 6 -1.4846 -7.0121 -0.5739 16 7 -2.2701 -6.4981 -1.4950 17 14 -1.5116 -8.8504 -0.2432 18 1 -2.5212 -9.1503 0.8037 19 1 -1.8640 -9.5729 -1.4920 20 1 -0.1713 -9.2896 0.2213 21 1 -0.3634 0.2745 0.9902 22 1 -0.3633 0.7204 -0.7330 23 1 -0.3633 -0.9949 -0.2575 24 1 3.1301 1.4424 0.0005 25 1 1.6768 1.9563 -0.8901 26 1 1.6767 1.9564 0.8898 27 1 1.9049 -1.7963 -1.1286 28 1 1.4801 -0.3802 -2.1199 29 1 3.0985 -0.5016 -1.3888 30 1 0.0449 -0.5277 2.2748 31 1 1.4530 -0.8612 3.4185 32 1 0.7428 -2.4538 -0.4531 33 1 -0.5342 -2.2097 0.7627 34 1 -0.3276 -4.5370 -1.1602 35 1 -1.6051 -4.2929 0.0550 36 1 -2.8632 -7.0735 -2.0028 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703547397.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:06 Heat of formation + Delta-G solvation = -47.430113 kcal Electronic energy + Delta-G solvation = -14472.306882 eV Core-core repulsion = 12149.644482 eV Total energy + Delta-G solvation = -2322.662401 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.78389 -38.13631 -35.07741 -34.66845 -30.11350 -28.71958 -28.33713 -26.92265 -24.44418 -23.76836 -21.61815 -19.29082 -18.63255 -17.67421 -16.75671 -16.66403 -16.12579 -15.68750 -14.90331 -14.76827 -14.60555 -13.80671 -13.72024 -13.30436 -13.09254 -12.94553 -12.85466 -12.71902 -12.36932 -12.23402 -12.05824 -11.81777 -11.49825 -11.43142 -11.24415 -11.01747 -10.81547 -10.59345 -10.07207 -8.34094 -6.47289 1.38974 1.42258 1.54408 2.33459 2.79078 2.99393 3.13303 3.66418 3.90594 3.92297 4.15289 4.24099 4.33740 4.39311 4.56519 4.62312 4.68914 4.78165 4.81668 4.87431 4.91588 4.96596 5.07938 5.08959 5.13785 5.17351 5.22907 5.31877 5.43071 5.51601 5.53694 5.57824 5.93642 6.52461 6.81221 7.25175 8.78417 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.056443 B = 0.005934 C = 0.005691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.959269 B = 4717.254704 C = 4919.133502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.039 4.039 3 C -0.130 4.130 4 C -0.153 4.153 5 C -0.117 4.117 6 H 0.120 0.880 7 C -0.169 4.169 8 C -0.167 4.167 9 H 0.098 0.902 10 C 0.076 3.924 11 O -0.416 6.416 12 C 0.211 3.789 13 C -0.552 4.552 14 H 0.061 0.939 15 C 0.007 3.993 16 N -0.930 5.930 17 Si 0.985 3.015 18 H -0.267 1.267 19 H -0.272 1.272 20 H -0.265 1.265 21 H 0.070 0.930 22 H 0.064 0.936 23 H 0.050 0.950 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.044 0.956 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.059 0.941 33 H 0.044 0.956 34 H -0.015 1.015 35 H -0.015 1.015 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.434 14.332 3.396 16.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.039 4.039 3 C -0.187 4.187 4 C -0.210 4.210 5 C -0.135 4.135 6 H 0.138 0.862 7 C -0.206 4.206 8 C -0.186 4.186 9 H 0.116 0.884 10 C 0.001 3.999 11 O -0.336 6.336 12 C 0.136 3.864 13 C -0.590 4.590 14 H 0.079 0.921 15 C -0.191 4.191 16 N -0.569 5.569 17 Si 0.808 3.192 18 H -0.192 1.192 19 H -0.197 1.197 20 H -0.189 1.189 21 H 0.088 0.912 22 H 0.083 0.917 23 H 0.069 0.931 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.122 0.878 31 H 0.127 0.873 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.003 0.997 35 H 0.002 0.998 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.411 14.203 3.393 16.376 hybrid contribution -0.483 -0.848 -0.289 1.018 sum 6.929 13.355 3.104 15.362 Atomic orbital electron populations 1.22607 0.95509 1.02239 1.02751 1.20067 0.94905 0.96078 0.92878 1.21784 1.01265 0.93467 1.02219 1.22097 1.01750 0.99950 0.97175 1.22573 0.99095 0.95417 0.96465 0.86175 1.23433 1.00804 1.00040 0.96272 1.22098 1.01827 0.91886 1.02764 0.88363 1.22723 0.97236 0.81294 0.98679 1.87780 1.62926 1.20653 1.62267 1.19802 0.86099 0.92734 0.87794 1.21399 1.23815 0.92303 1.21468 0.92083 1.25988 0.93996 1.05135 0.94027 1.70066 1.24914 1.38142 1.23797 0.85156 0.79067 0.76839 0.78176 1.19158 1.19696 1.18882 0.91165 0.91720 0.93140 0.91825 0.92093 0.91970 0.93736 0.92303 0.91332 0.87798 0.87308 0.92320 0.93833 0.99703 0.99771 0.91937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.26 7.19 71.98 0.52 -3.74 16 2 C -0.04 -0.88 0.76 -52.18 -0.04 -0.92 16 3 C -0.13 -2.20 8.37 71.98 0.60 -1.60 16 4 C -0.15 -3.76 8.21 71.98 0.59 -3.16 16 5 C -0.12 -2.80 5.03 -10.79 -0.05 -2.85 16 6 H 0.12 2.45 8.14 -2.38 -0.02 2.43 16 7 C -0.17 -4.16 9.41 30.60 0.29 -3.87 16 8 C -0.17 -5.36 5.90 -10.80 -0.06 -5.43 16 9 H 0.10 3.36 8.14 -2.38 -0.02 3.34 16 10 C 0.08 3.06 4.05 71.98 0.29 3.35 16 11 O -0.42 -21.79 10.32 -148.98 -1.54 -23.32 16 12 C 0.21 12.41 5.69 71.24 0.41 12.81 16 13 C -0.55 -34.05 9.43 25.60 0.24 -33.81 16 14 H 0.06 3.72 7.81 -2.91 -0.02 3.70 16 15 C 0.01 0.42 5.46 84.66 0.46 0.88 16 16 N -0.93 -56.87 13.29 21.45 0.28 -56.59 16 17 Si 0.99 45.07 29.54 68.60 2.03 47.10 16 18 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 19 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 20 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 21 H 0.07 1.59 5.54 -2.39 -0.01 1.57 16 22 H 0.06 1.39 8.06 -2.38 -0.02 1.37 16 23 H 0.05 1.51 4.09 -2.39 -0.01 1.50 16 24 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 26 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.04 1.35 5.08 -2.39 -0.01 1.34 16 28 H 0.06 1.37 8.06 -2.39 -0.02 1.35 16 29 H 0.07 1.44 8.06 -2.38 -0.02 1.42 16 30 H 0.10 2.52 5.48 -2.39 -0.01 2.50 16 31 H 0.11 2.27 8.14 -2.39 -0.02 2.26 16 32 H 0.06 2.32 4.01 -2.38 -0.01 2.31 16 33 H 0.04 1.72 6.16 -2.39 -0.01 1.71 16 34 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 35 H -0.02 -0.95 8.14 -2.38 -0.02 -0.96 16 36 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -67.00 279.75 5.06 -61.94 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 1.04 Total: 9.22 kcal Atomic # 6 Polarization: -41.59 SS G_CDS: 3.24 Total: -38.34 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: 0.28 Total: -56.59 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -1.54 Total: -23.32 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -67.00 5.06 -61.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703547397.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.513 kcal (2) G-P(sol) polarization free energy of solvation -67.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds